MetaDraft Reaction Report

Analysis

Input fasta: test.fasta
Metaproteome used: bigg2-eco41
Report date: 20-11-02
MetaDraft version: 0.9.3

Reactions (56)

Reactions selected

ReactionNameModelSource
R_ACGAMTUDP-N-acetylglucosamine:undecaprenylphosphate N-acetylglucosamine -1-phosphate transferasebigg2-eco41stu0163
R_ACGAptsN-Acetyl-D-glucosamine transport via PEP:Pyr PTSbigg2-eco41stu1264,stu1265
R_ACMANAptsN-acetyl-D-mannosamine transport via PTSbigg2-eco41stu1264,stu1265
R_ACONTAconitate hydratasebigg2-eco41stu1268
R_AGDCN-acetylglucosamine-6-phosphate deacetylasebigg2-eco41stu0501
R_ALAALArD-alanine-D-alanine ligase (reversible)bigg2-eco41stu1583
R_ALCD19Alcohol dehydrogenase (glycerol)bigg2-eco41stu0936
R_AMALT1Amylomaltase (maltotriose)bigg2-eco41stu1013
R_AMALT2Amylomaltase (maltotetraose)bigg2-eco41stu1013
R_AMALT3Amylomaltase (maltopentaose)bigg2-eco41stu1013
R_AMALT4Amylomaltase (maltohexaose)bigg2-eco41stu1013
R_ASPabcL-aspartate transport via ABC systembigg2-eco41stu1164
R_CYSSCysteine synthasebigg2-eco41stu0846
R_DHAPTDihydroxyacetone phosphotransferasebigg2-eco41stu1264,stu1265
R_DHBSr2,3-dihydroxybenzoate adenylate synthasebigg2-eco41stu0761
R_FRUptsD-fructose transport via PEP:Pyr PTSbigg2-eco41stu1264,stu1265
R_FRUpts2Fructose transport via PEP:Pyr PTS (f6p generating)bigg2-eco41stu1264,stu1265
R_GALTptsGalactitol transport via PEP:Pyr PTSbigg2-eco41stu1264,stu1265
R_GAMptsD-glucosamine transport via PEP:Pyr PTSbigg2-eco41stu1264,stu1265
R_GLCPGlycogen phosphorylasebigg2-eco41stu1012
R_GLCptsD-glucose transport via PEP:Pyr PTSbigg2-eco41stu1264,stu1265
R_GLNabcL-glutamine transport via ABC systembigg2-eco41stu0606,stu1492
R_GLU5KGlutamate 5-kinasebigg2-eco41stu1711
R_GLUabcL-glutamate transport via ABC systembigg2-eco41stu1164
R_ICDHyrIsocitrate dehydrogenase (NADP)bigg2-eco41stu1266
R_ILETAIsoleucine transaminasebigg2-eco41stu0590
R_Kt2rPotassium reversible transport via proton symportbigg2-eco41stu0264
R_LCADi_copy1bigg2-eco41stu0936
R_LEUTAiLeucine transaminase (irreversible)bigg2-eco41stu0590
R_MALTptsMaltose transport via PEP:Pyr PTSbigg2-eco41stu1264,stu1265
R_MANptsD-mannose transport via PEP:Pyr PTSbigg2-eco41stu1264,stu1265
R_MCITS2-methylcitrate synthasebigg2-eco41stu1267
R_METS_1Methionine synthasebigg2-eco41stu0785
R_MICITDr2-methylisocitrate dehydratasebigg2-eco41stu1268
R_MNLptsMannitol transport via PEP:Pyr PTSbigg2-eco41stu1264,stu1265
R_OBTFL2-Oxobutanoate formate lyasebigg2-eco41stu1640
R_OCBTOrnithine carbamoyltransferasebigg2-eco41stu0603
R_PFLPyruvate formate lyasebigg2-eco41stu1640
R_PGMPhosphoglycerate mutasebigg2-eco41stu0697
R_PHETA1Phenylalanine transaminasebigg2-eco41stu0590
R_PRPPSPhosphoribosylpyrophosphate synthetasebigg2-eco41stu1460
R_PTPATiPantetheine-phosphate adenylyltransferasebigg2-eco41stu1648
R_SBTptsD-sorbitol transport via PEP:Pyr PTSbigg2-eco41stu1264,stu1265
R_SERATSerine O-acetyltransferasebigg2-eco41stu0848
R_SHSL1O-succinylhomoserine lyase (L-cysteine)bigg2-eco41stu0847
R_SPODMSuperoxide dismutasebigg2-eco41stu0720
R_SUCptsSucrose transport via PEP:Pyr PTSbigg2-eco41stu1264,stu1265
R_THZPSNThiazole phosphate synthesisbigg2-eco41stu1461
R_TREptsTrehalose transport via PEP:Pyr PTSbigg2-eco41stu1264,stu1265
R_TRPS1Tryptophan synthase (indoleglycerol phosphate)bigg2-eco41stu1588
R_TRPS2Tryptophan synthase (indole)bigg2-eco41stu1588
R_TRPS3Tryptophan synthase (indoleglycerol phosphate)bigg2-eco41stu1588
R_UAGCVTUDP-N-acetylglucosamine 1-carboxyvinyltransferasebigg2-eco41stu1167
R_UDPG4EUDPglucose 4-epimerasebigg2-eco41stu1169
R_UPPRTUracil phosphoribosyltransferasebigg2-eco41stu0355
R_VALTAValine transaminasebigg2-eco41stu0590

Reactions not selected

ReactionNameModelSource

Annotation


R_ACGAMT (top)
Organismbigg2-eco41
R_ACGAMT
(irreversble)
UDP-N-acetylglucosamine:undecaprenylphosphate N-acetylglucosamine -1-phosphate transferase
Associationb3784
Association new(stu0163)
Equation IDM_udcpp_c + M_uacgam_c > M_ump_c + M_unaga_c
Equation NameUndecaprenyl phosphate + UDP-N-acetyl-D-glucosamine > UMP C9H11N2O9P + Undecaprenyl diphospho N-acetyl-glucosamine
Substrates
M_udcpp_cUndecaprenyl phosphate
charge: -2C55H89O4P
M_uacgam_cUDP-N-acetyl-D-glucosamine
charge: -2C17H25N3O17P2
Products
M_ump_cUMP C9H11N2O9P
charge: -2C9H11N2O9P
M_unaga_cUndecaprenyl diphospho N-acetyl-glucosamine
charge: -2C63H103NO12P2
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/ACGAMT
ishttp://identifiers.org/metanetx.reaction/MNXR95251

R_ACGApts (top)
Organismbigg2-eco41
R_ACGApts
(irreversble)
N-Acetyl-D-glucosamine transport via PEP:Pyr PTS
Association(((b2416 and b2415 and b0679) or (b2416 and b2417 and b2415 and b1101)))
Association new(stu1264 and stu1265)
Equation IDM_acgam_e + M_pep_c > M_pyr_c + M_acgam6p_c
Equation NameN-Acetyl-D-glucosamine + Phosphoenolpyruvate > Pyruvate + N-Acetyl-D-glucosamine 6-phosphate
Substrates
M_acgam_eN-Acetyl-D-glucosamine
charge: 0C8H15NO6
M_pep_cPhosphoenolpyruvate
charge: -3C3H2O6P
Products
M_pyr_cPyruvate
charge: -1C3H3O3
M_acgam6p_cN-Acetyl-D-glucosamine 6-phosphate
charge: -2C8H14NO9P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/ACGApts
ishttp://identifiers.org/metanetx.reaction/MNXR95253

R_ACMANApts (top)
Organismbigg2-eco41
R_ACMANApts
(irreversble)
N-acetyl-D-mannosamine transport via PTS
Association((b2416 and b1819 and b2415 and b1817 and b1818))
Association new(stu1264 and stu1265)
Equation IDM_pep_c + M_acmana_e > M_pyr_c + M_acmanap_c
Equation NamePhosphoenolpyruvate + N-Acetyl-D-mannosamine > Pyruvate + N-Acetyl-D-mannosamine 6-phosphate
Substrates
M_pep_cPhosphoenolpyruvate
charge: -3C3H2O6P
M_acmana_eN-Acetyl-D-mannosamine
charge: 0C8H15NO6
Products
M_pyr_cPyruvate
charge: -1C3H3O3
M_acmanap_cN-Acetyl-D-mannosamine 6-phosphate
charge: -2C8H14NO9P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/ACMANApts
ishttp://identifiers.org/metanetx.reaction/MNXR95275

R_ACONT (top)
Organismbigg2-eco41
R_ACONT
(reversible)
Aconitate hydratase
Association((b1276 or b0118))
Association new(stu1268)
Equation IDM_cit_c = M_icit_c
Equation NameCitrate = Isocitrate
Substrates
M_cit_cCitrate
charge: -3C6H5O7
Products
M_icit_cIsocitrate
charge: -3C6H5O7
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/ACONT
ishttp://identifiers.org/ec-code/4.2.1.3
ishttp://identifiers.org/kegg.reaction/R01324
ishttp://identifiers.org/metanetx.reaction/MNXR95384
ishttp://identifiers.org/rhea/10336
ishttp://identifiers.org/rhea/10337
ishttp://identifiers.org/rhea/10338
ishttp://identifiers.org/rhea/10339

R_AGDC (top)
Organismbigg2-eco41
R_AGDC
(irreversble)
N-acetylglucosamine-6-phosphate deacetylase
Associationb0677
Association new(stu0501)
Equation IDM_h2o_c + M_acgam6p_c > M_ac_c + M_gam6p_c
Equation NameH2O H2O + N-Acetyl-D-glucosamine 6-phosphate > Acetate + D-Glucosamine 6-phosphate
Substrates
M_h2o_cH2O H2O
charge: 0H2O
M_acgam6p_cN-Acetyl-D-glucosamine 6-phosphate
charge: -2C8H14NO9P
Products
M_ac_cAcetate
charge: -1C2H3O2
M_gam6p_cD-Glucosamine 6-phosphate
charge: -1C6H13NO8P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/AGDC
ishttp://identifiers.org/biocyc/META:NAG6PDEACET-RXN
ishttp://identifiers.org/ec-code/3.5.1.25
ishttp://identifiers.org/kegg.reaction/R02059
ishttp://identifiers.org/metanetx.reaction/MNXR95528
ishttp://identifiers.org/rhea/22936
ishttp://identifiers.org/rhea/22937
ishttp://identifiers.org/rhea/22938
ishttp://identifiers.org/rhea/22939

R_ALAALAr (top)
Organismbigg2-eco41
R_ALAALAr
(reversible)
D-alanine-D-alanine ligase (reversible)
Association((b0381 or b0092))
Association new(stu1583)
Equation IDM_atp_c + (-2.0) M_ala__D_c = M_pi_c + M_alaala_c + M_adp_c + M_h_c
Equation NameATP C10H12N5O13P3 + (-2.0) D-Alanine = Phosphate + D-Alanyl-D-alanine + ADP C10H12N5O10P2 + H+
Substrates
M_atp_cATP C10H12N5O13P3
charge: -4C10H12N5O13P3
M_ala__D_cD-Alanine
charge: 0C3H7NO2
Products
M_pi_cPhosphate
charge: -2HO4P
M_alaala_cD-Alanyl-D-alanine
charge: 0C6H12N2O3
M_adp_cADP C10H12N5O10P2
charge: -3C10H12N5O10P2
M_h_cH+
charge: 1H
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/ALAALAr
ishttp://identifiers.org/biocyc/META:DALADALALIG-RXN
ishttp://identifiers.org/ec-code/6.3.2.4
ishttp://identifiers.org/kegg.reaction/R01150
ishttp://identifiers.org/metanetx.reaction/MNXR95678
ishttp://identifiers.org/rhea/11224
ishttp://identifiers.org/rhea/11225
ishttp://identifiers.org/rhea/11226
ishttp://identifiers.org/rhea/11227

R_ALCD19 (top)
Organismbigg2-eco41
R_ALCD19
(reversible)
Alcohol dehydrogenase (glycerol)
Associationb0356
Association new(stu0936)
Equation IDM_h_c + M_nadh_c + M_glyald_c = M_glyc_c + M_nad_c
Equation NameH+ + Nicotinamide adenine dinucleotide - reduced + D-Glyceraldehyde = Glycerol + Nicotinamide adenine dinucleotide
Substrates
M_h_cH+
charge: 1H
M_nadh_cNicotinamide adenine dinucleotide - reduced
charge: -2C21H27N7O14P2
M_glyald_cD-Glyceraldehyde
charge: 0C3H6O3
Products
M_glyc_cGlycerol
charge: 0C3H8O3
M_nad_cNicotinamide adenine dinucleotide
charge: -1C21H26N7O14P2
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/ALCD19
ishttp://identifiers.org/ec-code/1.1.1.21
ishttp://identifiers.org/ec-code/1.1.1.72
ishttp://identifiers.org/kegg.reaction/R01036
ishttp://identifiers.org/metanetx.reaction/MNXR95709
ishttp://identifiers.org/rhea/30027
ishttp://identifiers.org/rhea/30028
ishttp://identifiers.org/rhea/30029
ishttp://identifiers.org/rhea/30030

R_AMALT1 (top)
Organismbigg2-eco41
R_AMALT1
(irreversble)
Amylomaltase (maltotriose)
Associationb3416
Association new(stu1013)
Equation IDM_malttr_c + M_malt_c > M_glc__D_c + M_maltttr_c
Equation NameMaltotriose C18H32O16 + Maltose C12H22O11 > D-Glucose + Maltotetraose
Substrates
M_malttr_cMaltotriose C18H32O16
charge: 0C18H32O16
M_malt_cMaltose C12H22O11
charge: 0C12H22O11
Products
M_glc__D_cD-Glucose
charge: 0C6H12O6
M_maltttr_cMaltotetraose
charge: 0C24H42O21
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/AMALT1
ishttp://identifiers.org/biocyc/META:AMYLOMALT-RXN
ishttp://identifiers.org/ec-code/2.4.1.25
ishttp://identifiers.org/metanetx.reaction/MNXR95800

R_AMALT2 (top)
Organismbigg2-eco41
R_AMALT2
(irreversble)
Amylomaltase (maltotetraose)
Associationb3416
Association new(stu1013)
Equation IDM_malt_c + M_maltttr_c > M_maltpt_c + M_glc__D_c
Equation NameMaltose C12H22O11 + Maltotetraose > Maltopentaose + D-Glucose
Substrates
M_malt_cMaltose C12H22O11
charge: 0C12H22O11
M_maltttr_cMaltotetraose
charge: 0C24H42O21
Products
M_maltpt_cMaltopentaose
charge: 0C30H52O26
M_glc__D_cD-Glucose
charge: 0C6H12O6
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/AMALT2
ishttp://identifiers.org/biocyc/META:RXN-14260
ishttp://identifiers.org/ec-code/2.4.1.25
ishttp://identifiers.org/metanetx.reaction/MNXR95801

R_AMALT3 (top)
Organismbigg2-eco41
R_AMALT3
(irreversble)
Amylomaltase (maltopentaose)
Associationb3416
Association new(stu1013)
Equation IDM_maltpt_c + M_malt_c > M_glc__D_c + M_malthx_c
Equation NameMaltopentaose + Maltose C12H22O11 > D-Glucose + Maltohexaose
Substrates
M_maltpt_cMaltopentaose
charge: 0C30H52O26
M_malt_cMaltose C12H22O11
charge: 0C12H22O11
Products
M_glc__D_cD-Glucose
charge: 0C6H12O6
M_malthx_cMaltohexaose
charge: 0C36H62O31
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/AMALT3
ishttp://identifiers.org/biocyc/META:RXN-14261
ishttp://identifiers.org/ec-code/2.4.1.25
ishttp://identifiers.org/metanetx.reaction/MNXR95802

R_AMALT4 (top)
Organismbigg2-eco41
R_AMALT4
(irreversble)
Amylomaltase (maltohexaose)
Associationb3416
Association new(stu1013)
Equation IDM_malt_c + M_malthx_c > M_glc__D_c + M_malthp_c
Equation NameMaltose C12H22O11 + Maltohexaose > D-Glucose + Maltoheptaose
Substrates
M_malt_cMaltose C12H22O11
charge: 0C12H22O11
M_malthx_cMaltohexaose
charge: 0C36H62O31
Products
M_glc__D_cD-Glucose
charge: 0C6H12O6
M_malthp_cMaltoheptaose
charge: 0C42H72O36
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/AMALT4
ishttp://identifiers.org/biocyc/META:MALTODEG-RXN
ishttp://identifiers.org/ec-code/2.4.1.25
ishttp://identifiers.org/metanetx.reaction/MNXR95803

R_ASPabc (top)
Organismbigg2-eco41
R_ASPabc
(irreversble)
L-aspartate transport via ABC system
Association((b0654 and b0655 and b0652 and b0653))
Association new(stu1164)
Equation IDM_asp__L_e + M_h2o_c + M_atp_c > M_pi_c + M_asp__L_c + M_adp_c + M_h_c
Equation NameL-Aspartate + H2O H2O + ATP C10H12N5O13P3 > Phosphate + L-Aspartate + ADP C10H12N5O10P2 + H+
Substrates
M_asp__L_eL-Aspartate
charge: -1C4H6NO4
M_h2o_cH2O H2O
charge: 0H2O
M_atp_cATP C10H12N5O13P3
charge: -4C10H12N5O13P3
Products
M_pi_cPhosphate
charge: -2HO4P
M_asp__L_cL-Aspartate
charge: -1C4H6NO4
M_adp_cADP C10H12N5O10P2
charge: -3C10H12N5O10P2
M_h_cH+
charge: 1H
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/ASPabc
ishttp://identifiers.org/biocyc/META:TRANS-RXN0-222
ishttp://identifiers.org/ec-code/3.6.3.21
ishttp://identifiers.org/metanetx.reaction/MNXR96103
ishttp://identifiers.org/rhea/29039#1
ishttp://identifiers.org/rhea/29040#1
ishttp://identifiers.org/rhea/29041#1
ishttp://identifiers.org/rhea/29042#1

R_CYSS (top)
Organismbigg2-eco41
R_CYSS
(irreversble)
Cysteine synthase
Association((b2414 or b2421))
Association new(stu0846)
Equation IDM_h2s_c + M_acser_c > M_ac_c + M_cys__L_c + M_h_c
Equation NameHydrogen sulfide + O-Acetyl-L-serine > Acetate + L-Cysteine + H+
Substrates
M_h2s_cHydrogen sulfide
charge: 0H2S
M_acser_cO-Acetyl-L-serine
charge: 0C5H9NO4
Products
M_ac_cAcetate
charge: -1C2H3O2
M_cys__L_cL-Cysteine
charge: 0C3H7NO2S
M_h_cH+
charge: 1H
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/CYSS
ishttp://identifiers.org/biocyc/META:ACSERLY-RXN
ishttp://identifiers.org/ec-code/2.5.1.47
ishttp://identifiers.org/ec-code/2.5.1.65
ishttp://identifiers.org/kegg.reaction/R00897
ishttp://identifiers.org/metanetx.reaction/MNXR97007
ishttp://identifiers.org/rhea/14829
ishttp://identifiers.org/rhea/14830
ishttp://identifiers.org/rhea/14831
ishttp://identifiers.org/rhea/14832

R_DHAPT (top)
Organismbigg2-eco41
R_DHAPT
(irreversble)
Dihydroxyacetone phosphotransferase
Association((b2416 and b1200 and b2415 and b1198 and b1199))
Association new(stu1264 and stu1265)
Equation IDM_pep_c + M_dha_c > M_pyr_c + M_dhap_c
Equation NamePhosphoenolpyruvate + Dihydroxyacetone > Pyruvate + Dihydroxyacetone phosphate
Substrates
M_pep_cPhosphoenolpyruvate
charge: -3C3H2O6P
M_dha_cDihydroxyacetone
charge: 0C3H6O3
Products
M_pyr_cPyruvate
charge: -1C3H3O3
M_dhap_cDihydroxyacetone phosphate
charge: -2C3H5O6P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/DHAPT
ishttp://identifiers.org/biocyc/META:2.7.1.121-RXN
ishttp://identifiers.org/ec-code/2.7.1.121
ishttp://identifiers.org/kegg.reaction/R01012
ishttp://identifiers.org/metanetx.reaction/MNXR97364
ishttp://identifiers.org/rhea/18381
ishttp://identifiers.org/rhea/18382
ishttp://identifiers.org/rhea/18383
ishttp://identifiers.org/rhea/18384

R_DHBSr (top)
Organismbigg2-eco41
R_DHBSr
(reversible)
2,3-dihydroxybenzoate adenylate synthase
Associationb0594
Association new(stu0761)
Equation IDM_atp_c + M_23dhb_c = M_ppi_c + M_23dhba_c
Equation NameATP C10H12N5O13P3 + 2,3-Dihydroxybenzoate = Diphosphate + (2,3-Dihydroxybenzoyl)adenylate
Substrates
M_atp_cATP C10H12N5O13P3
charge: -4C10H12N5O13P3
M_23dhb_c2,3-Dihydroxybenzoate
charge: -1C7H5O4
Products
M_ppi_cDiphosphate
charge: -3HO7P2
M_23dhba_c(2,3-Dihydroxybenzoyl)adenylate
charge: -2C17H16N5O10P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/DHBSr
ishttp://identifiers.org/biocyc/META:DHBAMPLIG-RXN
ishttp://identifiers.org/ec-code/2.7.7.58
ishttp://identifiers.org/kegg.reaction/R01504
ishttp://identifiers.org/metanetx.reaction/MNXR97369
ishttp://identifiers.org/rhea/20229
ishttp://identifiers.org/rhea/20230
ishttp://identifiers.org/rhea/20231
ishttp://identifiers.org/rhea/20232

R_FRUpts (top)
Organismbigg2-eco41
R_FRUpts
(irreversble)
D-fructose transport via PEP:Pyr PTS
Association((b2416 and b2169 and b2415 and b2167))
Association new(stu1264 and stu1265)
Equation IDM_fru_e + M_pep_c > M_f1p_c + M_pyr_c
Equation NameD-Fructose + Phosphoenolpyruvate > D-Fructose 1-phosphate + Pyruvate
Substrates
M_fru_eD-Fructose
charge: 0C6H12O6
M_pep_cPhosphoenolpyruvate
charge: -3C3H2O6P
Products
M_f1p_cD-Fructose 1-phosphate
charge: -2C6H11O9P
M_pyr_cPyruvate
charge: -1C3H3O3
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/FRUpts
ishttp://identifiers.org/metanetx.reaction/MNXR99661

R_FRUpts2 (top)
Organismbigg2-eco41
R_FRUpts2
(irreversble)
Fructose transport via PEP:Pyr PTS (f6p generating)
Association((b2416 and b1817 and b1819 and b2415 and b1818))
Association new(stu1264 and stu1265)
Equation IDM_fru_e + M_pep_c > M_pyr_c + M_f6p_c
Equation NameD-Fructose + Phosphoenolpyruvate > Pyruvate + D-Fructose 6-phosphate
Substrates
M_fru_eD-Fructose
charge: 0C6H12O6
M_pep_cPhosphoenolpyruvate
charge: -3C3H2O6P
Products
M_pyr_cPyruvate
charge: -1C3H3O3
M_f6p_cD-Fructose 6-phosphate
charge: -2C6H11O9P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/FRUpts2
ishttp://identifiers.org/metanetx.reaction/MNXR99662

R_GALTpts (top)
Organismbigg2-eco41
R_GALTpts
(irreversble)
Galactitol transport via PEP:Pyr PTS
Association((b2416 and b2092 and b2415 and b2094 and b2093))
Association new(stu1264 and stu1265)
Equation IDM_pep_c + M_galt_e > M_pyr_c + M_galt1p_c
Equation NamePhosphoenolpyruvate + Galactitol > Pyruvate + Galactitol 1-phosphate
Substrates
M_pep_cPhosphoenolpyruvate
charge: -3C3H2O6P
M_galt_eGalactitol
charge: 0C6H14O6
Products
M_pyr_cPyruvate
charge: -1C3H3O3
M_galt1p_cGalactitol 1-phosphate
charge: -2C6H13O9P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/GALTpts
ishttp://identifiers.org/metanetx.reaction/MNXR100018

R_GAMpts (top)
Organismbigg2-eco41
R_GAMpts
(irreversble)
D-glucosamine transport via PEP:Pyr PTS
Association((b2416 and b1819 and b2415 and b1817 and b1818))
Association new(stu1264 and stu1265)
Equation IDM_pep_c + M_gam_e > M_pyr_c + M_gam6p_c
Equation NamePhosphoenolpyruvate + D-Glucosamine > Pyruvate + D-Glucosamine 6-phosphate
Substrates
M_pep_cPhosphoenolpyruvate
charge: -3C3H2O6P
M_gam_eD-Glucosamine
charge: 1C6H14NO5
Products
M_pyr_cPyruvate
charge: -1C3H3O3
M_gam6p_cD-Glucosamine 6-phosphate
charge: -1C6H13NO8P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/GAMpts
ishttp://identifiers.org/metanetx.reaction/MNXR100034

R_GLCP (top)
Organismbigg2-eco41
R_GLCP
(irreversble)
Glycogen phosphorylase
Association((b3428 or b3417))
Association new(stu1012)
Equation IDM_glycogen_c + M_pi_c > M_g1p_c
Equation NameGlycogen C6H10O5 + Phosphate > D-Glucose 1-phosphate
Substrates
M_glycogen_cGlycogen C6H10O5
charge: 0C6H10O5
M_pi_cPhosphate
charge: -2HO4P
Products
M_g1p_cD-Glucose 1-phosphate
charge: -2C6H11O9P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/GLCP
ishttp://identifiers.org/metanetx.reaction/MNXR100214

R_GLCpts (top)
Organismbigg2-eco41
R_GLCpts
(irreversble)
D-glucose transport via PEP:Pyr PTS
Association(((b2416 and b2417 and b2415 and b1101) or (b2416 and b1819 and b2415 and b1817 and b1818) or (b2416 and b2417 and b2415 and b1621)))
Association new(stu1264 and stu1265)
Equation IDM_pep_c + M_glc__D_e > M_g6p_c + M_pyr_c
Equation NamePhosphoenolpyruvate + D-Glucose > D-Glucose 6-phosphate + Pyruvate
Substrates
M_pep_cPhosphoenolpyruvate
charge: -3C3H2O6P
M_glc__D_eD-Glucose
charge: 0C6H12O6
Products
M_g6p_cD-Glucose 6-phosphate
charge: -2C6H11O9P
M_pyr_cPyruvate
charge: -1C3H3O3
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/GLCpts
ishttp://identifiers.org/metanetx.reaction/MNXR100237

R_GLNabc (top)
Organismbigg2-eco41
R_GLNabc
(irreversble)
L-glutamine transport via ABC system
Association((b0810 and b0811 and b0809))
Association new(stu1492 and stu0606)
Equation IDM_gln__L_e + M_h2o_c + M_atp_c > M_pi_c + M_gln__L_c + M_adp_c + M_h_c
Equation NameL-Glutamine + H2O H2O + ATP C10H12N5O13P3 > Phosphate + L-Glutamine + ADP C10H12N5O10P2 + H+
Substrates
M_gln__L_eL-Glutamine
charge: 0C5H10N2O3
M_h2o_cH2O H2O
charge: 0H2O
M_atp_cATP C10H12N5O13P3
charge: -4C10H12N5O13P3
Products
M_pi_cPhosphate
charge: -2HO4P
M_gln__L_cL-Glutamine
charge: 0C5H10N2O3
M_adp_cADP C10H12N5O10P2
charge: -3C10H12N5O10P2
M_h_cH+
charge: 1H
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/GLNabc
ishttp://identifiers.org/biocyc/META:ABC-12-RXN
ishttp://identifiers.org/ec-code/3.6.3.21
ishttp://identifiers.org/metanetx.reaction/MNXR100258
ishttp://identifiers.org/rhea/29895#1
ishttp://identifiers.org/rhea/29896#1
ishttp://identifiers.org/rhea/29897#1
ishttp://identifiers.org/rhea/29898#1

R_GLU5K (top)
Organismbigg2-eco41
R_GLU5K
(irreversble)
Glutamate 5-kinase
Associationb0242
Association new(stu1711)
Equation IDM_glu__L_c + M_atp_c > M_adp_c + M_glu5p_c
Equation NameL-Glutamate + ATP C10H12N5O13P3 > ADP C10H12N5O10P2 + L-Glutamate 5-phosphate
Substrates
M_glu__L_cL-Glutamate
charge: -1C5H8NO4
M_atp_cATP C10H12N5O13P3
charge: -4C10H12N5O13P3
Products
M_adp_cADP C10H12N5O10P2
charge: -3C10H12N5O10P2
M_glu5p_cL-Glutamate 5-phosphate
charge: -2C5H8NO7P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/GLU5K
ishttp://identifiers.org/biocyc/META:GLUTKIN-RXN
ishttp://identifiers.org/ec-code/2.7.2.11
ishttp://identifiers.org/kegg.reaction/R00239
ishttp://identifiers.org/metanetx.reaction/MNXR100277
ishttp://identifiers.org/rhea/14877
ishttp://identifiers.org/rhea/14878
ishttp://identifiers.org/rhea/14879
ishttp://identifiers.org/rhea/14880

R_GLUabc (top)
Organismbigg2-eco41
R_GLUabc
(irreversble)
L-glutamate transport via ABC system
Association((b0654 and b0655 and b0652 and b0653))
Association new(stu1164)
Equation IDM_glu__L_e + M_h2o_c + M_atp_c > M_glu__L_c + M_pi_c + M_adp_c + M_h_c
Equation NameL-Glutamate + H2O H2O + ATP C10H12N5O13P3 > L-Glutamate + Phosphate + ADP C10H12N5O10P2 + H+
Substrates
M_glu__L_eL-Glutamate
charge: -1C5H8NO4
M_h2o_cH2O H2O
charge: 0H2O
M_atp_cATP C10H12N5O13P3
charge: -4C10H12N5O13P3
Products
M_glu__L_cL-Glutamate
charge: -1C5H8NO4
M_pi_cPhosphate
charge: -2HO4P
M_adp_cADP C10H12N5O10P2
charge: -3C10H12N5O10P2
M_h_cH+
charge: 1H
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/GLUabc
ishttp://identifiers.org/biocyc/META:ABC-13-RXN
ishttp://identifiers.org/ec-code/3.6.3.21
ishttp://identifiers.org/metanetx.reaction/MNXR100299
ishttp://identifiers.org/rhea/29035#1
ishttp://identifiers.org/rhea/29036#1
ishttp://identifiers.org/rhea/29037#1
ishttp://identifiers.org/rhea/29038#1

R_ICDHyr (top)
Organismbigg2-eco41
R_ICDHyr
(reversible)
Isocitrate dehydrogenase (NADP)
Associationb1136
Association new(stu1266)
Equation IDM_icit_c + M_nadp_c = M_nadph_c + M_co2_c + M_akg_c
Equation NameIsocitrate + Nicotinamide adenine dinucleotide phosphate = Nicotinamide adenine dinucleotide phosphate - reduced + CO2 CO2 + 2-Oxoglutarate
Substrates
M_icit_cIsocitrate
charge: -3C6H5O7
M_nadp_cNicotinamide adenine dinucleotide phosphate
charge: -3C21H25N7O17P3
Products
M_nadph_cNicotinamide adenine dinucleotide phosphate - reduced
charge: -4C21H26N7O17P3
M_co2_cCO2 CO2
charge: 0CO2
M_akg_c2-Oxoglutarate
charge: -2C5H4O5
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/ICDHyr
ishttp://identifiers.org/ec-code/1.1.1.42
ishttp://identifiers.org/kegg.reaction/R00267
ishttp://identifiers.org/metanetx.reaction/MNXR100781
ishttp://identifiers.org/rhea/19629
ishttp://identifiers.org/rhea/19630
ishttp://identifiers.org/rhea/19631
ishttp://identifiers.org/rhea/19632

R_ILETA (top)
Organismbigg2-eco41
R_ILETA
(reversible)
Isoleucine transaminase
Associationb3770
Association new(stu0590)
Equation IDM_akg_c + M_ile__L_c = M_glu__L_c + M_3mop_c
Equation Name2-Oxoglutarate + L-Isoleucine = L-Glutamate + (S)-3-Methyl-2-oxopentanoate
Substrates
M_akg_c2-Oxoglutarate
charge: -2C5H4O5
M_ile__L_cL-Isoleucine
charge: 0C6H13NO2
Products
M_glu__L_cL-Glutamate
charge: -1C5H8NO4
M_3mop_c(S)-3-Methyl-2-oxopentanoate
charge: -1C6H9O3
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/ILETA
ishttp://identifiers.org/biocyc/META:BRANCHED-CHAINAMINOTRANSFERILEU-RXN
ishttp://identifiers.org/ec-code/2.6.1.42
ishttp://identifiers.org/kegg.reaction/R02199
ishttp://identifiers.org/metanetx.reaction/MNXR96228
ishttp://identifiers.org/rhea/24801
ishttp://identifiers.org/rhea/24802
ishttp://identifiers.org/rhea/24803
ishttp://identifiers.org/rhea/24804

R_Kt2r (top)
Organismbigg2-eco41
R_Kt2r
(reversible)
Potassium reversible transport via proton symport
Association((b1363 or b3849))
Association new(stu0264)
Equation IDM_k_e + M_h_e = M_h_c + M_k_c
Equation NamePotassium + H+ = H+ + Potassium
Substrates
M_k_ePotassium
charge: 1K
M_h_eH+
charge: 1H
Products
M_h_cH+
charge: 1H
M_k_cPotassium
charge: 1K
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/Kt2r
ishttp://identifiers.org/biocyc/META:TRANS-RXN-3
ishttp://identifiers.org/metanetx.reaction/MNXR100951
ishttp://identifiers.org/rhea/28490
ishttp://identifiers.org/rhea/28491
ishttp://identifiers.org/rhea/28492
ishttp://identifiers.org/rhea/28493

R_LCADi_copy1 (top)
Organismbigg2-eco41
R_LCADi_copy1
(reversible)
Association((b0356 or b1415 or b1300 or b3588))
Association new(stu0936)
Equation IDM_h2o_c + M_lald__L_c + M_nad_c = M_lac__L_c + (2.0) M_h_c + M_nadh_c
Equation NameH2O H2O + L-Lactaldehyde + Nicotinamide adenine dinucleotide = L-Lactate + (2.0) H+ + Nicotinamide adenine dinucleotide - reduced
Substrates
M_h2o_cH2O H2O
charge: 0H2O
M_lald__L_cL-Lactaldehyde
charge: 0C3H6O2
M_nad_cNicotinamide adenine dinucleotide
charge: -1C21H26N7O14P2
Products
M_lac__L_cL-Lactate
charge: -1C3H5O3
M_h_cH+
charge: 1H
M_nadh_cNicotinamide adenine dinucleotide - reduced
charge: -2C21H27N7O14P2
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/biocyc/META:LACTALDDEHYDROG-RXN
ishttp://identifiers.org/ec-code/1.2.1.22
ishttp://identifiers.org/kegg.reaction/R01446
ishttp://identifiers.org/metanetx.reaction/MNXR101018
ishttp://identifiers.org/rhea/14277
ishttp://identifiers.org/rhea/14278
ishttp://identifiers.org/rhea/14279
ishttp://identifiers.org/rhea/14280

R_LEUTAi (top)
Organismbigg2-eco41
R_LEUTAi
(irreversble)
Leucine transaminase (irreversible)
Association((b3770 or b4054))
Association new(stu0590)
Equation IDM_glu__L_c + M_4mop_c > M_leu__L_c + M_akg_c
Equation NameL-Glutamate + 4-Methyl-2-oxopentanoate > L-Leucine + 2-Oxoglutarate
Substrates
M_glu__L_cL-Glutamate
charge: -1C5H8NO4
M_4mop_c4-Methyl-2-oxopentanoate
charge: -1C6H9O3
Products
M_leu__L_cL-Leucine
charge: 0C6H13NO2
M_akg_c2-Oxoglutarate
charge: -2C5H4O5
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/LEUTAi
ishttp://identifiers.org/biocyc/META:BRANCHED-CHAINAMINOTRANSFERLEU-RXN
ishttp://identifiers.org/ec-code/2.6.1.42
ishttp://identifiers.org/ec-code/2.6.1.6
ishttp://identifiers.org/ec-code/2.6.1.67
ishttp://identifiers.org/kegg.reaction/R01090
ishttp://identifiers.org/metanetx.reaction/MNXR96229
ishttp://identifiers.org/rhea/18321
ishttp://identifiers.org/rhea/18322
ishttp://identifiers.org/rhea/18323
ishttp://identifiers.org/rhea/18324

R_MALTpts (top)
Organismbigg2-eco41
R_MALTpts
(irreversble)
Maltose transport via PEP:Pyr PTS
Association((b2416 and b2417 and b2415 and b1621 and b4036))
Association new(stu1264 and stu1265)
Equation IDM_malt_e + M_pep_c > M_malt6p_c + M_pyr_c
Equation NameMaltose C12H22O11 + Phosphoenolpyruvate > Maltose 6'-phosphate + Pyruvate
Substrates
M_malt_eMaltose C12H22O11
charge: 0C12H22O11
M_pep_cPhosphoenolpyruvate
charge: -3C3H2O6P
Products
M_malt6p_cMaltose 6'-phosphate
charge: -2C12H21O14P
M_pyr_cPyruvate
charge: -1C3H3O3
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/MALTpts
ishttp://identifiers.org/metanetx.reaction/MNXR101363

R_MANpts (top)
Organismbigg2-eco41
R_MANpts
(irreversble)
D-mannose transport via PEP:Pyr PTS
Association((b2416 and b1817 and b1819 and b2415 and b1818))
Association new(stu1264 and stu1265)
Equation IDM_pep_c + M_man_e > M_pyr_c + M_man6p_c
Equation NamePhosphoenolpyruvate + D-Mannose > Pyruvate + D-Mannose 6-phosphate
Substrates
M_pep_cPhosphoenolpyruvate
charge: -3C3H2O6P
M_man_eD-Mannose
charge: 0C6H12O6
Products
M_pyr_cPyruvate
charge: -1C3H3O3
M_man6p_cD-Mannose 6-phosphate
charge: -2C6H11O9P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/MANpts
ishttp://identifiers.org/metanetx.reaction/MNXR101401

R_MCITS (top)
Organismbigg2-eco41
R_MCITS
(irreversble)
2-methylcitrate synthase
Associationb0333
Association new(stu1267)
Equation IDM_ppcoa_c + M_h2o_c + M_oaa_c > M_2mcit_c + M_h_c + M_coa_c
Equation NamePropanoyl-CoA + H2O H2O + Oxaloacetate > 2-Methylcitrate + H+ + Coenzyme A
Substrates
M_ppcoa_cPropanoyl-CoA
charge: -4C24H36N7O17P3S
M_h2o_cH2O H2O
charge: 0H2O
M_oaa_cOxaloacetate
charge: -2C4H2O5
Products
M_2mcit_c2-Methylcitrate
charge: -3C7H7O7
M_h_cH+
charge: 1H
M_coa_cCoenzyme A
charge: -4C21H32N7O16P3S
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/MCITS
ishttp://identifiers.org/biocyc/META:2-METHYLCITRATE-SYNTHASE-RXN
ishttp://identifiers.org/ec-code/2.3.3.5
ishttp://identifiers.org/kegg.reaction/R00931
ishttp://identifiers.org/metanetx.reaction/MNXR101417
ishttp://identifiers.org/rhea/23780
ishttp://identifiers.org/rhea/23781
ishttp://identifiers.org/rhea/23782
ishttp://identifiers.org/rhea/23783

R_METS_1 (top)
Organismbigg2-eco41
R_METS_1
(irreversble)
Methionine synthase
Association((b3829 or b4019))
Association new(stu0785)
Equation IDM_hcys__L_c + M_5mthf_c > M_met__L_c + M_thf_c
Equation NameL-Homocysteine + 5-Methyltetrahydrofolate > L-Methionine + 5,6,7,8-Tetrahydrofolate
Substrates
M_hcys__L_cL-Homocysteine
charge: 0C4H9NO2S
M_5mthf_c5-Methyltetrahydrofolate
charge: -1C20H24N7O6
Products
M_met__L_cL-Methionine
charge: 0C5H11NO2S
M_thf_c5,6,7,8-Tetrahydrofolate
charge: -2C19H21N7O6
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/METS_1
ishttp://identifiers.org/ec-code/2.1.1.13
ishttp://identifiers.org/kegg.reaction/R00946
ishttp://identifiers.org/metanetx.reaction/MNXR101481
ishttp://identifiers.org/rhea/11172
ishttp://identifiers.org/rhea/11173
ishttp://identifiers.org/rhea/11174
ishttp://identifiers.org/rhea/11175

R_MICITDr (top)
Organismbigg2-eco41
R_MICITDr
(irreversble)
2-methylisocitrate dehydratase
Association((b1276 or b0118))
Association new(stu1268)
Equation IDM_2mcacn_c + M_h2o_c > M_micit_c
Equation NameCis-2-Methylaconitate + H2O H2O > Methylisocitrate
Substrates
M_2mcacn_cCis-2-Methylaconitate
charge: -3C7H5O6
M_h2o_cH2O H2O
charge: 0H2O
Products
M_micit_cMethylisocitrate
charge: -3C7H7O7
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/MICITDr
ishttp://identifiers.org/biocyc/META:4.2.1.99-RXN
ishttp://identifiers.org/ec-code/4.2.1.99
ishttp://identifiers.org/kegg.reaction/R04425
ishttp://identifiers.org/metanetx.reaction/MNXR101580
ishttp://identifiers.org/rhea/17941
ishttp://identifiers.org/rhea/17942
ishttp://identifiers.org/rhea/17943
ishttp://identifiers.org/rhea/17944

R_MNLpts (top)
Organismbigg2-eco41
R_MNLpts
(irreversble)
Mannitol transport via PEP:Pyr PTS
Association((b2416 and b2415 and b3599))
Association new(stu1264 and stu1265)
Equation IDM_pep_c + M_mnl_e > M_pyr_c + M_mnl1p_c
Equation NamePhosphoenolpyruvate + D-Mannitol > Pyruvate + D-Mannitol 1-phosphate
Substrates
M_pep_cPhosphoenolpyruvate
charge: -3C3H2O6P
M_mnl_eD-Mannitol
charge: 0C6H14O6
Products
M_pyr_cPyruvate
charge: -1C3H3O3
M_mnl1p_cD-Mannitol 1-phosphate
charge: -2C6H13O9P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/MNLpts
ishttp://identifiers.org/metanetx.reaction/MNXR101677

R_OBTFL (top)
Organismbigg2-eco41
R_OBTFL
(irreversble)
2-Oxobutanoate formate lyase
Association(((b0902 and b0903) or b3114))
Association new(stu1640)
Equation IDM_2obut_c + M_coa_c > M_ppcoa_c + M_for_c
Equation Name2-Oxobutanoate + Coenzyme A > Propanoyl-CoA + Formate
Substrates
M_2obut_c2-Oxobutanoate
charge: -1C4H5O3
M_coa_cCoenzyme A
charge: -4C21H32N7O16P3S
Products
M_ppcoa_cPropanoyl-CoA
charge: -4C24H36N7O17P3S
M_for_cFormate
charge: -1CH1O2
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/OBTFL
ishttp://identifiers.org/biocyc/META:KETOBUTFORMLY-RXN
ishttp://identifiers.org/ec-code/2.3.1.-
ishttp://identifiers.org/ec-code/2.3.1.54
ishttp://identifiers.org/kegg.reaction/R06987
ishttp://identifiers.org/metanetx.reaction/MNXR102135
ishttp://identifiers.org/rhea/28054
ishttp://identifiers.org/rhea/28055
ishttp://identifiers.org/rhea/28056
ishttp://identifiers.org/rhea/28057

R_OCBT (top)
Organismbigg2-eco41
R_OCBT
(reversible)
Ornithine carbamoyltransferase
Association((b4254 or b0273))
Association new(stu0603)
Equation IDM_cbp_c + M_orn_c = M_citr__L_c + M_h_c + M_pi_c
Equation NameCarbamoyl phosphate + Ornithine = L-Citrulline + H+ + Phosphate
Substrates
M_cbp_cCarbamoyl phosphate
charge: -2CH2NO5P
M_orn_cOrnithine
charge: 1C5H13N2O2
Products
M_citr__L_cL-Citrulline
charge: 0C6H13N3O3
M_h_cH+
charge: 1H
M_pi_cPhosphate
charge: -2HO4P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/OCBT
ishttp://identifiers.org/biocyc/META:ORNCARBAMTRANSFER-RXN
ishttp://identifiers.org/biocyc/META:RXN-13482
ishttp://identifiers.org/ec-code/2.1.3.3
ishttp://identifiers.org/kegg.reaction/R01398
ishttp://identifiers.org/metanetx.reaction/MNXR102137
ishttp://identifiers.org/rhea/19513
ishttp://identifiers.org/rhea/19514
ishttp://identifiers.org/rhea/19515
ishttp://identifiers.org/rhea/19516

R_PFL (top)
Organismbigg2-eco41
R_PFL
(irreversble)
Pyruvate formate lyase
Association((b3114 or (b3951 and b3952) or (b0902 and b0903)))
Association new(stu1640)
Equation IDM_pyr_c + M_coa_c > M_accoa_c + M_for_c
Equation NamePyruvate + Coenzyme A > Acetyl-CoA + Formate
Substrates
M_pyr_cPyruvate
charge: -1C3H3O3
M_coa_cCoenzyme A
charge: -4C21H32N7O16P3S
Products
M_accoa_cAcetyl-CoA
charge: -4C23H34N7O17P3S
M_for_cFormate
charge: -1CH1O2
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/PFL
ishttp://identifiers.org/biocyc/META:PYRUVFORMLY-RXN
ishttp://identifiers.org/ec-code/2.3.1.54
ishttp://identifiers.org/kegg.reaction/R00212
ishttp://identifiers.org/metanetx.reaction/MNXR102514
ishttp://identifiers.org/rhea/11844
ishttp://identifiers.org/rhea/11845
ishttp://identifiers.org/rhea/11846
ishttp://identifiers.org/rhea/11847

R_PGM (top)
Organismbigg2-eco41
R_PGM
(reversible)
Phosphoglycerate mutase
Association((b4395 or b3612 or b0755))
Association new(stu0697)
Equation IDM_2pg_c = M_3pg_c
Equation NameD-Glycerate 2-phosphate = 3-Phospho-D-glycerate
Substrates
M_2pg_cD-Glycerate 2-phosphate
charge: -3C3H4O7P
Products
M_3pg_c3-Phospho-D-glycerate
charge: -3C3H4O7P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/PGM
ishttp://identifiers.org/biocyc/META:3PGAREARR-RXN
ishttp://identifiers.org/biocyc/META:RXN-15513
ishttp://identifiers.org/ec-code/5.4.2.1
ishttp://identifiers.org/ec-code/5.4.2.11
ishttp://identifiers.org/ec-code/5.4.2.12
ishttp://identifiers.org/kegg.reaction/R01518
ishttp://identifiers.org/metanetx.reaction/MNXR102547
ishttp://identifiers.org/rhea/15901
ishttp://identifiers.org/rhea/15902
ishttp://identifiers.org/rhea/15903
ishttp://identifiers.org/rhea/15904

R_PHETA1 (top)
Organismbigg2-eco41
R_PHETA1
(reversible)
Phenylalanine transaminase
Association((b0928 or b3770 or b4054))
Association new(stu0590)
Equation IDM_akg_c + M_phe__L_c = M_glu__L_c + M_phpyr_c
Equation Name2-Oxoglutarate + L-Phenylalanine = L-Glutamate + Phenylpyruvate
Substrates
M_akg_c2-Oxoglutarate
charge: -2C5H4O5
M_phe__L_cL-Phenylalanine
charge: 0C9H11NO2
Products
M_glu__L_cL-Glutamate
charge: -1C5H8NO4
M_phpyr_cPhenylpyruvate
charge: -1C9H7O3
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/PHETA1
ishttp://identifiers.org/biocyc/META:PHEAMINOTRANS-RXN
ishttp://identifiers.org/biocyc/META:RXN-10814
ishttp://identifiers.org/ec-code/2.6.1.1
ishttp://identifiers.org/ec-code/2.6.1.42
ishttp://identifiers.org/ec-code/2.6.1.5
ishttp://identifiers.org/ec-code/2.6.1.57
ishttp://identifiers.org/ec-code/2.6.1.58
ishttp://identifiers.org/ec-code/2.6.1.9
ishttp://identifiers.org/kegg.reaction/R00694
ishttp://identifiers.org/metanetx.reaction/MNXR102631

R_PRPPS (top)
Organismbigg2-eco41
R_PRPPS
(reversible)
Phosphoribosylpyrophosphate synthetase
Associationb1207
Association new(stu1460)
Equation IDM_r5p_c + M_atp_c = M_prpp_c + M_h_c + M_amp_c
Equation NameAlpha-D-Ribose 5-phosphate + ATP C10H12N5O13P3 = 5-Phospho-alpha-D-ribose 1-diphosphate + H+ + AMP C10H12N5O7P
Substrates
M_r5p_cAlpha-D-Ribose 5-phosphate
charge: -2C5H9O8P
M_atp_cATP C10H12N5O13P3
charge: -4C10H12N5O13P3
Products
M_prpp_c5-Phospho-alpha-D-ribose 1-diphosphate
charge: -5C5H8O14P3
M_h_cH+
charge: 1H
M_amp_cAMP C10H12N5O7P
charge: -2C10H12N5O7P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/PRPPS
ishttp://identifiers.org/ec-code/2.7.6.1
ishttp://identifiers.org/metanetx.reaction/MNXR103215

R_PTPATi (top)
Organismbigg2-eco41
R_PTPATi
(irreversble)
Pantetheine-phosphate adenylyltransferase
Associationb3634
Association new(stu1648)
Equation IDM_h_c + M_atp_c + M_pan4p_c > M_ppi_c + M_dpcoa_c
Equation NameH+ + ATP C10H12N5O13P3 + Pantetheine 4'-phosphate > Diphosphate + Dephospho-CoA
Substrates
M_h_cH+
charge: 1H
M_atp_cATP C10H12N5O13P3
charge: -4C10H12N5O13P3
M_pan4p_cPantetheine 4'-phosphate
charge: -2C11H21N2O7PS
Products
M_ppi_cDiphosphate
charge: -3HO7P2
M_dpcoa_cDephospho-CoA
charge: -2C21H33N7O13P2S
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/PTPATi
ishttp://identifiers.org/biocyc/META:PANTEPADENYLYLTRAN-RXN
ishttp://identifiers.org/ec-code/2.7.7.3
ishttp://identifiers.org/kegg.reaction/R03035
ishttp://identifiers.org/metanetx.reaction/MNXR95892
ishttp://identifiers.org/rhea/19801
ishttp://identifiers.org/rhea/19802
ishttp://identifiers.org/rhea/19803
ishttp://identifiers.org/rhea/19804

R_SBTpts (top)
Organismbigg2-eco41
R_SBTpts
(irreversble)
D-sorbitol transport via PEP:Pyr PTS
Association((b2416 and b2703 and b2415 and b2704 and b2702))
Association new(stu1264 and stu1265)
Equation IDM_pep_c + M_sbt__D_e > M_pyr_c + M_sbt6p_c
Equation NamePhosphoenolpyruvate + D-Sorbitol > Pyruvate + D-Sorbitol 6-phosphate
Substrates
M_pep_cPhosphoenolpyruvate
charge: -3C3H2O6P
M_sbt__D_eD-Sorbitol
charge: 0C6H14O6
Products
M_pyr_cPyruvate
charge: -1C3H3O3
M_sbt6p_cD-Sorbitol 6-phosphate
charge: -2C6H13O9P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/SBTpts
ishttp://identifiers.org/metanetx.reaction/MNXR104290

R_SERAT (top)
Organismbigg2-eco41
R_SERAT
(reversible)
Serine O-acetyltransferase
Associationb3607
Association new(stu0848)
Equation IDM_accoa_c + M_ser__L_c = M_acser_c + M_coa_c
Equation NameAcetyl-CoA + L-Serine = O-Acetyl-L-serine + Coenzyme A
Substrates
M_accoa_cAcetyl-CoA
charge: -4C23H34N7O17P3S
M_ser__L_cL-Serine
charge: 0C3H7NO3
Products
M_acser_cO-Acetyl-L-serine
charge: 0C5H9NO4
M_coa_cCoenzyme A
charge: -4C21H32N7O16P3S
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/SERAT
ishttp://identifiers.org/biocyc/META:SERINE-O-ACETTRAN-RXN
ishttp://identifiers.org/ec-code/2.3.1.30
ishttp://identifiers.org/kegg.reaction/R00586
ishttp://identifiers.org/metanetx.reaction/MNXR104275
ishttp://identifiers.org/rhea/24560
ishttp://identifiers.org/rhea/24561
ishttp://identifiers.org/rhea/24562
ishttp://identifiers.org/rhea/24563

R_SHSL1 (top)
Organismbigg2-eco41
R_SHSL1
(irreversble)
O-succinylhomoserine lyase (L-cysteine)
Associationb3939
Association new(stu0847)
Equation IDM_suchms_c + M_cys__L_c > M_cyst__L_c + M_succ_c + M_h_c
Equation NameO-Succinyl-L-homoserine + L-Cysteine > L-Cystathionine + Succinate + H+
Substrates
M_suchms_cO-Succinyl-L-homoserine
charge: -1C8H12NO6
M_cys__L_cL-Cysteine
charge: 0C3H7NO2S
Products
M_cyst__L_cL-Cystathionine
charge: 0C7H14N2O4S
M_succ_cSuccinate
charge: -2C4H4O4
M_h_cH+
charge: 1H
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/SHSL1
ishttp://identifiers.org/biocyc/META:O-SUCCHOMOSERLYASE-RXN
ishttp://identifiers.org/ec-code/2.5.1.48
ishttp://identifiers.org/kegg.reaction/R03260
ishttp://identifiers.org/metanetx.reaction/MNXR104380
ishttp://identifiers.org/rhea/20397
ishttp://identifiers.org/rhea/20398
ishttp://identifiers.org/rhea/20399
ishttp://identifiers.org/rhea/20400

R_SPODM (top)
Organismbigg2-eco41
R_SPODM
(irreversble)
Superoxide dismutase
Association((b3908 or b1646 or b1656))
Association new(stu0720)
Equation ID(-2.0) M_o2s_c + (-2.0) M_h_c > M_o2_c + M_h2o2_c
Equation Name(-2.0) Superoxide anion + (-2.0) H+ > O2 O2 + Hydrogen peroxide
Substrates
M_o2s_cSuperoxide anion
charge: -1O2
M_h_cH+
charge: 1H
Products
M_o2_cO2 O2
charge: 0O2
M_h2o2_cHydrogen peroxide
charge: 0H2O2
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/SPODM
ishttp://identifiers.org/biocyc/META:SUPEROX-DISMUT-RXN
ishttp://identifiers.org/ec-code/1.15.1.1
ishttp://identifiers.org/kegg.reaction/R00275
ishttp://identifiers.org/metanetx.reaction/MNXR104498
ishttp://identifiers.org/rhea/20696
ishttp://identifiers.org/rhea/20697
ishttp://identifiers.org/rhea/20698
ishttp://identifiers.org/rhea/20699

R_SUCpts (top)
Organismbigg2-eco41
R_SUCpts
(irreversble)
Sucrose transport via PEP:Pyr PTS
Association((b2416 and b2417 and b2415 and b2429))
Association new(stu1264 and stu1265)
Equation IDM_pep_c + M_sucr_e > M_pyr_c + M_suc6p_c
Equation NamePhosphoenolpyruvate + Sucrose C12H22O11 > Pyruvate + Sucrose 6-phosphate
Substrates
M_pep_cPhosphoenolpyruvate
charge: -3C3H2O6P
M_sucr_eSucrose C12H22O11
charge: 0C12H22O11
Products
M_pyr_cPyruvate
charge: -1C3H3O3
M_suc6p_cSucrose 6-phosphate
charge: -2C12H21O14P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/SUCpts
ishttp://identifiers.org/metanetx.reaction/MNXR104643

R_THZPSN (top)
Organismbigg2-eco41
R_THZPSN
(irreversble)
Thiazole phosphate synthesis
Association((b3990 and b3991 and b3992 and b2530 and b4407 and b0423))
Association new(stu1461)
Equation IDM_tyr__L_c + M_dxyl5p_c + M_cys__L_c + M_atp_c > M_co2_c + M_4mpetz_c + M_h_c + M_ala__L_c + M_4hba_c + M_ppi_c + M_h2o_c + M_amp_c
Equation NameL-Tyrosine + 1-deoxy-D-xylulose 5-phosphate + L-Cysteine + ATP C10H12N5O13P3 > CO2 CO2 + 4-Methyl-5-(2-phosphoethyl)-thiazole + H+ + L-Alanine + 4-Hydroxy-benzyl alcohol + Diphosphate + H2O H2O + AMP C10H12N5O7P
Substrates
M_tyr__L_cL-Tyrosine
charge: 0C9H11NO3
M_dxyl5p_c1-deoxy-D-xylulose 5-phosphate
charge: -2C5H9O7P
M_cys__L_cL-Cysteine
charge: 0C3H7NO2S
M_atp_cATP C10H12N5O13P3
charge: -4C10H12N5O13P3
Products
M_co2_cCO2 CO2
charge: 0CO2
M_4mpetz_c4-Methyl-5-(2-phosphoethyl)-thiazole
charge: -2C6H8NO4PS
M_h_cH+
charge: 1H
M_ala__L_cL-Alanine
charge: 0C3H7NO2
M_4hba_c4-Hydroxy-benzyl alcohol
charge: 0C7H8O2
M_ppi_cDiphosphate
charge: -3HO7P2
M_h2o_cH2O H2O
charge: 0H2O
M_amp_cAMP C10H12N5O7P
charge: -2C10H12N5O7P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/THZPSN
ishttp://identifiers.org/metanetx.reaction/MNXR104858

R_TREpts (top)
Organismbigg2-eco41
R_TREpts
(irreversble)
Trehalose transport via PEP:Pyr PTS
Association((b2416 and b2417 and b2415 and b4240))
Association new(stu1264 and stu1265)
Equation IDM_pep_c + M_tre_e > M_pyr_c + M_tre6p_c
Equation NamePhosphoenolpyruvate + Trehalose > Pyruvate + Alpha,alpha'-Trehalose 6-phosphate
Substrates
M_pep_cPhosphoenolpyruvate
charge: -3C3H2O6P
M_tre_eTrehalose
charge: 0C12H22O11
Products
M_pyr_cPyruvate
charge: -1C3H3O3
M_tre6p_cAlpha,alpha'-Trehalose 6-phosphate
charge: -2C12H21O14P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/TREpts
ishttp://identifiers.org/ec-code/2.7.1.69
ishttp://identifiers.org/metanetx.reaction/MNXR104931

R_TRPS1 (top)
Organismbigg2-eco41
R_TRPS1
(irreversble)
Tryptophan synthase (indoleglycerol phosphate)
Association((b1260 and b1261))
Association new(stu1588)
Equation IDM_ser__L_c + M_3ig3p_c > M_g3p_c + M_trp__L_c + M_h2o_c
Equation NameL-Serine + C'-(3-Indolyl)-glycerol 3-phosphate > Glyceraldehyde 3-phosphate + L-Tryptophan + H2O H2O
Substrates
M_ser__L_cL-Serine
charge: 0C3H7NO3
M_3ig3p_cC'-(3-Indolyl)-glycerol 3-phosphate
charge: -2C11H12NO6P
Products
M_g3p_cGlyceraldehyde 3-phosphate
charge: -2C3H5O6P
M_trp__L_cL-Tryptophan
charge: 0C11H12N2O2
M_h2o_cH2O H2O
charge: 0H2O
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/TRPS1
ishttp://identifiers.org/biocyc/META:TRYPSYN-RXN
ishttp://identifiers.org/ec-code/4.2.1.20
ishttp://identifiers.org/kegg.reaction/R02722
ishttp://identifiers.org/metanetx.reaction/MNXR104343
ishttp://identifiers.org/rhea/10532
ishttp://identifiers.org/rhea/10533
ishttp://identifiers.org/rhea/10534
ishttp://identifiers.org/rhea/10535

R_TRPS2 (top)
Organismbigg2-eco41
R_TRPS2
(irreversble)
Tryptophan synthase (indole)
Association((b1260 and b1261))
Association new(stu1588)
Equation IDM_ser__L_c + M_indole_c > M_h2o_c + M_trp__L_c
Equation NameL-Serine + Indole > H2O H2O + L-Tryptophan
Substrates
M_ser__L_cL-Serine
charge: 0C3H7NO3
M_indole_cIndole
charge: 0C8H7N
Products
M_h2o_cH2O H2O
charge: 0H2O
M_trp__L_cL-Tryptophan
charge: 0C11H12N2O2
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/TRPS2
ishttp://identifiers.org/biocyc/META:RXN0-2382
ishttp://identifiers.org/ec-code/4.2.1.122
ishttp://identifiers.org/ec-code/4.2.1.20
ishttp://identifiers.org/kegg.reaction/R00674
ishttp://identifiers.org/metanetx.reaction/MNXR104946
ishttp://identifiers.org/rhea/26434
ishttp://identifiers.org/rhea/26435
ishttp://identifiers.org/rhea/26436
ishttp://identifiers.org/rhea/26437

R_TRPS3 (top)
Organismbigg2-eco41
R_TRPS3
(irreversble)
Tryptophan synthase (indoleglycerol phosphate)
Association((b1260 and b1261))
Association new(stu1588)
Equation IDM_3ig3p_c > M_g3p_c + M_indole_c
Equation NameC'-(3-Indolyl)-glycerol 3-phosphate > Glyceraldehyde 3-phosphate + Indole
Substrates
M_3ig3p_cC'-(3-Indolyl)-glycerol 3-phosphate
charge: -2C11H12NO6P
Products
M_g3p_cGlyceraldehyde 3-phosphate
charge: -2C3H5O6P
M_indole_cIndole
charge: 0C8H7N
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/TRPS3
ishttp://identifiers.org/biocyc/META:RXN0-2381
ishttp://identifiers.org/ec-code/4.1.2.8
ishttp://identifiers.org/ec-code/4.2.1.20
ishttp://identifiers.org/kegg.reaction/R02340
ishttp://identifiers.org/metanetx.reaction/MNXR99889
ishttp://identifiers.org/rhea/14081
ishttp://identifiers.org/rhea/14082
ishttp://identifiers.org/rhea/14083
ishttp://identifiers.org/rhea/14084

R_UAGCVT (top)
Organismbigg2-eco41
R_UAGCVT
(irreversble)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
Associationb3189
Association new(stu1167)
Equation IDM_pep_c + M_uacgam_c > M_pi_c + M_uaccg_c
Equation NamePhosphoenolpyruvate + UDP-N-acetyl-D-glucosamine > Phosphate + UDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine
Substrates
M_pep_cPhosphoenolpyruvate
charge: -3C3H2O6P
M_uacgam_cUDP-N-acetyl-D-glucosamine
charge: -2C17H25N3O17P2
Products
M_pi_cPhosphate
charge: -2HO4P
M_uaccg_cUDP-N-acetyl-3-O-(1-carboxyvinyl)-D-glucosamine
charge: -3C20H26N3O19P2
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/UAGCVT
ishttp://identifiers.org/biocyc/META:UDPNACETYLGLUCOSAMENOLPYRTRANS-RXN
ishttp://identifiers.org/ec-code/2.5.1.7
ishttp://identifiers.org/kegg.reaction/R00660
ishttp://identifiers.org/metanetx.reaction/MNXR105032
ishttp://identifiers.org/rhea/18681
ishttp://identifiers.org/rhea/18682
ishttp://identifiers.org/rhea/18683
ishttp://identifiers.org/rhea/18684

R_UDPG4E (top)
Organismbigg2-eco41
R_UDPG4E
(reversible)
UDPglucose 4-epimerase
Associationb0759
Association new(stu1169)
Equation IDM_udpg_c = M_udpgal_c
Equation NameUDPglucose = UDPgalactose
Substrates
M_udpg_cUDPglucose
charge: -2C15H22N2O17P2
Products
M_udpgal_cUDPgalactose
charge: -2C15H22N2O17P2
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/UDPG4E
ishttp://identifiers.org/biocyc/META:UDPGLUCEPIM-RXN
ishttp://identifiers.org/ec-code/5.1.3.2
ishttp://identifiers.org/kegg.reaction/R00291
ishttp://identifiers.org/metanetx.reaction/MNXR105057
ishttp://identifiers.org/rhea/22168
ishttp://identifiers.org/rhea/22169
ishttp://identifiers.org/rhea/22170
ishttp://identifiers.org/rhea/22171

R_UPPRT (top)
Organismbigg2-eco41
R_UPPRT
(irreversble)
Uracil phosphoribosyltransferase
Associationb2498
Association new(stu0355)
Equation IDM_prpp_c + M_ura_c > M_ppi_c + M_ump_c
Equation Name5-Phospho-alpha-D-ribose 1-diphosphate + Uracil > Diphosphate + UMP C9H11N2O9P
Substrates
M_prpp_c5-Phospho-alpha-D-ribose 1-diphosphate
charge: -5C5H8O14P3
M_ura_cUracil
charge: 0C4H4N2O2
Products
M_ppi_cDiphosphate
charge: -3HO7P2
M_ump_cUMP C9H11N2O9P
charge: -2C9H11N2O9P
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/UPPRT
ishttp://identifiers.org/biocyc/META:URACIL-PRIBOSYLTRANS-RXN
ishttp://identifiers.org/ec-code/2.4.2.9
ishttp://identifiers.org/kegg.reaction/R00966
ishttp://identifiers.org/metanetx.reaction/MNXR105142
ishttp://identifiers.org/rhea/13017
ishttp://identifiers.org/rhea/13018
ishttp://identifiers.org/rhea/13019
ishttp://identifiers.org/rhea/13020

R_VALTA (top)
Organismbigg2-eco41
R_VALTA
(reversible)
Valine transaminase
Associationb3770
Association new(stu0590)
Equation IDM_akg_c + M_val__L_c = M_glu__L_c + M_3mob_c
Equation Name2-Oxoglutarate + L-Valine = L-Glutamate + 3-Methyl-2-oxobutanoate
Substrates
M_akg_c2-Oxoglutarate
charge: -2C5H4O5
M_val__L_cL-Valine
charge: 0C5H11NO2
Products
M_glu__L_cL-Glutamate
charge: -1C5H8NO4
M_3mob_c3-Methyl-2-oxobutanoate
charge: -1C5H7O3
Annotations
RDF references (opens in browser)
ishttp://identifiers.org/bigg.reaction/VALTA
ishttp://identifiers.org/biocyc/META:BRANCHED-CHAINAMINOTRANSFERVAL-RXN
ishttp://identifiers.org/ec-code/2.6.1.42
ishttp://identifiers.org/ec-code/2.6.1.6
ishttp://identifiers.org/kegg.reaction/R01214
ishttp://identifiers.org/metanetx.reaction/MNXR96230
ishttp://identifiers.org/rhea/24813
ishttp://identifiers.org/rhea/24814
ishttp://identifiers.org/rhea/24815
ishttp://identifiers.org/rhea/24816

 

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