Input fasta: test.fasta
Metaproteome used: bigg2-eco41
Report date: 20-11-02
MetaDraft version: 0.9.3
stu0265, stu0262, stu0246, stu1886, stu1869, stu0160, stu0762, stu0763, stu1589, stu0117, stu0505, stu0507, stu0692, stu0596, stu0987
Source | Target | Score | Model |
stu0163 | b3784 | 1.0 | bigg2-eco41 |
stu0264 | b3849 | 1.0 | bigg2-eco41 |
stu0355 | b2498 | 1.0 | bigg2-eco41 |
stu0501 | b0677 | 1.0 | bigg2-eco41 |
stu0590 | b3770 | 1.0 | bigg2-eco41 |
stu0603 | b4254 | 1.0 | bigg2-eco41 |
stu0606 | b0809 | 1.0 | bigg2-eco41 |
stu0697 | b4395 | 1.0 | bigg2-eco41 |
stu0720 | b3908 | 1.0 | bigg2-eco41 |
stu0761 | b0594 | 1.0 | bigg2-eco41 |
stu0785 | b3829 | 1.0 | bigg2-eco41 |
stu0846 | b2414 | 1.0 | bigg2-eco41 |
stu0847 | b3939 | 1.0 | bigg2-eco41 |
stu0848 | b3607 | 1.0 | bigg2-eco41 |
stu0936 | b0356 | 1.0 | bigg2-eco41 |
stu1012 | b3428 | 1.0 | bigg2-eco41 |
stu1013 | b3416 | 1.0 | bigg2-eco41 |
stu1164 | b0653 | 1.0 | bigg2-eco41 |
stu1167 | b3189 | 1.0 | bigg2-eco41 |
stu1169 | b0759 | 1.0 | bigg2-eco41 |
stu1264 | b2416 | 1.0 | bigg2-eco41 |
stu1265 | b2415 | 1.0 | bigg2-eco41 |
stu1266 | b1136 | 1.0 | bigg2-eco41 |
stu1267 | b0333 | 1.0 | bigg2-eco41 |
stu1268 | b1276 | 1.0 | bigg2-eco41 |
stu1460 | b1207 | 1.0 | bigg2-eco41 |
stu1461 | b2530 | 1.0 | bigg2-eco41 |
stu1492 | b0811 | 1.0 | bigg2-eco41 |
stu1583 | b0381 | 1.0 | bigg2-eco41 |
stu1588 | b1261 | 1.0 | bigg2-eco41 |
stu1640 | b0902 | 1.0 | bigg2-eco41 |
stu1648 | b3634 | 1.0 | bigg2-eco41 |
stu1711 | b0242 | 1.0 | bigg2-eco41 |
Source | Target | Score | Model |
stu0264 | b1363 | 0.219 | bigg2-eco41 |
stu0603 | b0273 | 0.801 | bigg2-eco41 |
stu1012 | b3417 | 0.186 | bigg2-eco41 |
stu1164 | b0810 | 0.063 | bigg2-eco41 |
Matching Gene Information: b3784 | |
function | enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions 1.6.4 metabolism; macromolecules (cellular constituent) biosynthesis; enterobacterial common antigen (surface glycolipid) 6.3 cell structure; surface antigens (ECA, O antigen of LPS) |
GO_function | GO:0042280 - cell surface antigen activity, host-interacting |
gene_synonym | ECK3776; JW3758; wecA |
EC_number | 2.4.1.- |
product | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase |
GO_process | GO:0009246 - enterobacterial common antigen biosynthetic process |
gene | rfe |
protein_id | NP_418231.1 |
db_xref | GI:16131640 ASAP:ABE-0012366 UniProtKB/Swiss-Prot:P0AC78 ECOCYC:EG10840 EcoGene:EG10840 GeneID:948789 |
Associated reactions(s) | |
R_ACGAMT (bigg2-eco41) | UDP-N-acetylglucosamine:undecaprenylphosphate N-acetylglucosamine -1-phosphate transferase |
b3784 |
Matching Gene Information: b3849 | |
function | transport; Transport of small molecules: Cations |
GO_component | GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall |
gene_synonym | ECK3841; JW5576; sapJ |
note | potassium uptake, requires TrkE |
gene | trkH |
product | potassium transporter |
protein_id | YP_026273.1 |
db_xref | GI:49176432 ASAP:ABE-0012574 UniProtKB/Swiss-Prot:P0AFZ7 ECOCYC:EG11021 EcoGene:EG11021 GeneID:948333 |
Associated reactions(s) | |
R_Kt2r (bigg2-eco41) | Potassium reversible transport via proton symport |
((b1363 or b3849)) |
Matching Gene Information: b2498 | |
function | enzyme; Salvage of nucleosides and nucleotides |
gene_synonym | ECK2494; JW2483; uraP |
EC_number | 2.4.2.9 |
product | uracil phosphoribosyltransferase |
GO_process | GO:0015949 - nucleobase, nucleoside and nucleotide interconversion |
experiment | N-terminus verified by Edman degradation: PMID 9298646 |
protein_id | NP_416993.2 |
gene | upp |
db_xref | GI:90111448 ASAP:ABE-0008224 UniProtKB/Swiss-Prot:P0A8F0 ECOCYC:EG11332 EcoGene:EG11332 GeneID:946979 |
Associated reactions(s) | |
R_UPPRT (bigg2-eco41) | Uracil phosphoribosyltransferase |
b2498 |
Matching Gene Information: b0677 | |
function | enzyme; Central intermediary metabolism: Amino sugars |
gene_synonym | ECK0665; JW0663 |
EC_number | 3.5.1.25 |
product | N-acetylglucosamine-6-phosphate deacetylase |
GO_process | GO:0046349 - amino sugar biosynthetic process |
gene | nagA |
protein_id | NP_415203.1 |
db_xref | GI:16128653 ASAP:ABE-0002301 UniProtKB/Swiss-Prot:P0AF18 ECOCYC:EG10632 EcoGene:EG10632 GeneID:945289 |
Associated reactions(s) | |
R_AGDC (bigg2-eco41) | N-acetylglucosamine-6-phosphate deacetylase |
b0677 |
Matching Gene Information: b3770 | |
function | enzyme; Amino acid biosynthesis: Isoleucine, Valine |
gene_synonym | ECK3762; JW5606 |
EC_number | 2.6.1.42 |
product | branched-chain amino-acid aminotransferase |
GO_process | GO:0006523 - alanine biosynthetic process; GO:0009098 - leucine biosynthetic process |
gene | ilvE |
protein_id | YP_026247.1 |
db_xref | GI:49176403 ASAP:ABE-0012316 UniProtKB/Swiss-Prot:P0AB80 ECOCYC:EG10497 EcoGene:EG10497 GeneID:948278 |
Associated reactions(s) | |
R_VALTA (bigg2-eco41) | Valine transaminase |
b3770 | |
R_ILETA (bigg2-eco41) | Isoleucine transaminase |
b3770 | |
R_PHETA1 (bigg2-eco41) | Phenylalanine transaminase |
((b0928 or b3770 or b4054)) | |
R_LEUTAi (bigg2-eco41) | Leucine transaminase (irreversible) |
((b3770 or b4054)) |
Matching Gene Information: b4254 | |
function | enzyme; Amino acid biosynthesis: Arginine |
GO_component | GO:0005737 - cytoplasm |
gene_synonym | ECK4247; JW4211 |
EC_number | 2.1.3.3 |
product | ornithine carbamoyltransferase 1 |
GO_process | GO:0006526 - arginine biosynthetic process |
gene | argI |
protein_id | NP_418675.1 |
db_xref | GI:16132076 ASAP:ABE-0013927 UniProtKB/Swiss-Prot:P04391 ECOCYC:EG10069 EcoGene:EG10069 GeneID:948774 |
Associated reactions(s) | |
R_OCBT (bigg2-eco41) | Ornithine carbamoyltransferase |
((b4254 or b0273)) |
Matching Gene Information: b0809 | |
function | transport; Transport of small molecules: Amino acids, amines |
GO_component | GO:0005737 - cytoplasm |
gene_synonym | ECK0798; JW0794 |
note | ATP-binding component of glutamine high-affinity transport system |
GO_process | GO:0006542 - glutamine biosynthetic process |
gene | glnQ |
product | glutamine transporter subunit |
protein_id | NP_415330.1 |
db_xref | GI:16128777 ASAP:ABE-0002764 UniProtKB/Swiss-Prot:P10346 ECOCYC:EG10389 EcoGene:EG10389 GeneID:945435 |
Associated reactions(s) | |
R_GLNabc (bigg2-eco41) | L-glutamine transport via ABC system |
((b0810 and b0811 and b0809)) |
Matching Gene Information: b4395 | |
function | enzyme; Energy metabolism, carbon: Glycolysis |
GO_component | GO:0005737 - cytoplasm |
gene_synonym | ECK4387; JW4358; ytjC |
note | phosphoglyceromutase 2 |
GO_process | GO:0006094 - gluconeogenesis; GO:0006096 - glycolysis |
gene | ytjC |
product | predicted phosphoglyceromutase 2, co-factor independent |
protein_id | NP_418812.1 |
db_xref | GI:16132212 ASAP:ABE-0014416 UniProtKB/Swiss-Prot:P0A7A2 ECOCYC:EG12164 EcoGene:EG12164 GeneID:948918 |
Associated reactions(s) | |
R_PGM (bigg2-eco41) | Phosphoglycerate mutase |
((b4395 or b3612 or b0755)) |
Matching Gene Information: b3908 | |
function | enzyme; Detoxification |
GO_component | GO:0005737 - cytoplasm |
gene_synonym | ECK3901; JW3879 |
EC_number | 1.15.1.1 |
note | superoxide dismutase, manganese |
GO_process | GO:0006805 - xenobiotic metabolic process |
gene | sodA |
product | superoxide dismutase, Mn |
protein_id | NP_418344.3 |
db_xref | GI:49176442 ASAP:ABE-0012761 UniProtKB/Swiss-Prot:P00448 ECOCYC:EG10953 EcoGene:EG10953 GeneID:948403 |
Associated reactions(s) | |
R_SPODM (bigg2-eco41) | Superoxide dismutase |
((b3908 or b1646 or b1656)) |
Matching Gene Information: b0594 | |
function | enzyme; Biosynthesis of cofactors, carriers: Enterochelin |
GO_component | GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall |
gene_synonym | ECK0587; JW0586 |
EC_number | 2.7.7.58 |
note | 2,3-dihydroxybenzoate-AMP ligase |
GO_process | GO:0009239 - enterobactin biosynthetic process; GO:0019184 - nonribosomal peptide biosynthetic process |
gene | entE |
product | 2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex |
protein_id | NP_415126.1 |
db_xref | GI:16128577 ASAP:ABE-0002049 UniProtKB/Swiss-Prot:P10378 ECOCYC:EG10263 EcoGene:EG10263 GeneID:947426 |
Associated reactions(s) | |
R_DHBSr (bigg2-eco41) | 2,3-dihydroxybenzoate adenylate synthase |
b0594 |
Matching Gene Information: b3829 | |
function | enzyme; Amino acid biosynthesis: Methionine |
GO_component | GO:0005737 - cytoplasm |
gene_synonym | ECK3823; JW3805; metB12 |
EC_number | 2.1.1.14 |
note | tetrahydropteroyltriglutamate methyltransferase |
GO_process | GO:0009086 - methionine biosynthetic process; GO:0006556 - S-adenosylmethionine biosynthetic process |
gene | metE |
product | 5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase |
protein_id | NP_418273.1 |
db_xref | GI:16131678 ASAP:ABE-0012520 UniProtKB/Swiss-Prot:P25665 ECOCYC:EG10584 EcoGene:EG10584 GeneID:948323 |
Associated reactions(s) | |
R_METS_1 (bigg2-eco41) | Methionine synthase |
((b3829 or b4019)) |
Matching Gene Information: b2414 | |
function | enzyme; Amino acid biosynthesis: Cysteine |
GO_component | GO:0005737 - cytoplasm |
gene_synonym | cysZ; ECK2409; JW2407 |
EC_number | 2.5.1.47 |
note | cysteine synthase A, O-acetylserine sulfhydrolase A |
GO_process | GO:0019344 - cysteine biosynthetic process |
gene | cysK |
product | cysteine synthase A, O-acetylserine sulfhydrolase A subunit |
protein_id | NP_416909.1 |
db_xref | GI:16130340 ASAP:ABE-0007957 UniProtKB/Swiss-Prot:P0ABK5 ECOCYC:EG10192 EcoGene:EG10192 GeneID:946877 |
Associated reactions(s) | |
R_CYSS (bigg2-eco41) | Cysteine synthase |
((b2414 or b2421)) |
Matching Gene Information: b3939 | |
function | enzyme; Amino acid biosynthesis: Methionine |
GO_component | GO:0005737 - cytoplasm |
gene_synonym | ECK3931; JW3910; met-1 |
EC_number | 2.5.1.48 |
note | cystathionine gamma-synthase |
GO_process | GO:0009063 - cellular amino acid catabolic process; GO:0009086 - methionine biosynthetic process |
gene | metB |
product | cystathionine gamma-synthase, PLP-dependent |
protein_id | NP_418374.1 |
db_xref | GI:16131777 ASAP:ABE-0012887 UniProtKB/Swiss-Prot:P00935 ECOCYC:EG10582 EcoGene:EG10582 GeneID:948434 |
Associated reactions(s) | |
R_SHSL1 (bigg2-eco41) | O-succinylhomoserine lyase (L-cysteine) |
b3939 |
Matching Gene Information: b3607 | |
function | enzyme; Amino acid biosynthesis: Cysteine |
GO_component | GO:0005737 - cytoplasm |
gene_synonym | ECK3597; JW3582 |
EC_number | 2.3.1.30 |
product | serine acetyltransferase |
GO_process | GO:0019344 - cysteine biosynthetic process |
gene | cysE |
protein_id | NP_418064.1 |
db_xref | GI:16131478 ASAP:ABE-0011793 UniProtKB/Swiss-Prot:P0A9D4 ECOCYC:EG10187 EcoGene:EG10187 GeneID:948126 |
Associated reactions(s) | |
R_SERAT (bigg2-eco41) | Serine O-acetyltransferase |
b3607 |
Matching Gene Information: b0356 | |
function | enzyme; Energy metabolism, carbon: Fermentation |
GO_component | GO:0005737 - cytoplasm |
gene_synonym | adhC; ECK0353; JW0347 |
EC_number | 1.1.1.1 1.1.1.284 |
note | alcohol dehydrogenase class III; formaldehyde dehydrogenase, glutathione-dependent |
GO_process | GO:0006113 - fermentation |
experiment | N-terminus verified by Edman degradation: PMID 1731906 |
protein_id | NP_414890.1 |
gene | frmA |
product | alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase |
db_xref | GI:16128341 ASAP:ABE-0001221 UniProtKB/Swiss-Prot:P25437 ECOCYC:EG50010 EcoGene:EG50010 GeneID:944988 |
Associated reactions(s) | |
R_ALCD19 (bigg2-eco41) | Alcohol dehydrogenase (glycerol) |
b0356 | |
R_LCADi_copy1 (bigg2-eco41) | |
((b0356 or b1415 or b1300 or b3588)) |
Matching Gene Information: b3428 | |
function | enzyme; Macromolecule synthesis, modification: Polysaccharides - (cytoplasmic) |
GO_component | GO:0005737 - cytoplasm |
gene_synonym | ECK3414; glgY; JW3391 |
EC_number | 2.4.1.1 |
product | glycogen phosphorylase |
GO_process | GO:0016052 - carbohydrate catabolic process; GO:0000271 - polysaccharide biosynthetic process |
gene | glgP |
protein_id | NP_417886.1 |
db_xref | GI:16131302 ASAP:ABE-0011198 UniProtKB/Swiss-Prot:P0AC86 ECOCYC:EG10380 EcoGene:EG10380 GeneID:947931 |
Associated reactions(s) | |
R_GLCP (bigg2-eco41) | Glycogen phosphorylase |
((b3428 or b3417)) |
Matching Gene Information: b3416 | |
function | enzyme; Degradation of polysaccharides |
GO_component | GO:0005737 - cytoplasm |
gene_synonym | ECK3403; JW3379; malA |
EC_number | 2.4.1.25 |
product | 4-alpha-glucanotransferase (amylomaltase) |
GO_process | GO:0016052 - carbohydrate catabolic process; GO:0000272 - polysaccharide catabolic process |
gene | malQ |
protein_id | NP_417875.1 |
db_xref | GI:16131292 ASAP:ABE-0011151 UniProtKB/Swiss-Prot:P15977 ECOCYC:EG10561 EcoGene:EG10561 GeneID:947923 |
Associated reactions(s) | |
R_AMALT2 (bigg2-eco41) | Amylomaltase (maltotetraose) |
b3416 | |
R_AMALT3 (bigg2-eco41) | Amylomaltase (maltopentaose) |
b3416 | |
R_AMALT4 (bigg2-eco41) | Amylomaltase (maltohexaose) |
b3416 | |
R_AMALT1 (bigg2-eco41) | Amylomaltase (maltotriose) |
b3416 |
Matching Gene Information: b0653 | |
function | transport; Transport of small molecules: Amino acids, amines |
GO_component | GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall |
gene_synonym | ECK0646; JW0648 |
note | glutamate/aspartate transport system permease; membrane component of ABC superfamily |
GO_process | GO:0006532 - aspartate biosynthetic process; GO:0006537 - glutamate biosynthetic process |
gene | gltK |
product | glutamate and aspartate transporter subunit |
protein_id | NP_415186.1 |
db_xref | GI:16128636 ASAP:ABE-0002234 UniProtKB/Swiss-Prot:P0AER5 ECOCYC:EG12662 EcoGene:EG12662 GeneID:947354 |
Associated reactions(s) | |
R_GLUabc (bigg2-eco41) | L-glutamate transport via ABC system |
((b0654 and b0655 and b0652 and b0653)) | |
R_ASPabc (bigg2-eco41) | L-aspartate transport via ABC system |
((b0654 and b0655 and b0652 and b0653)) |
Matching Gene Information: b3189 | |
function | enzyme; Murein sacculus, peptidoglycan |
GO_component | GO:0009274 - peptidoglycan-based cell wall |
gene_synonym | ECK3178; JW3156; mrbA; murZ |
EC_number | 2.5.1.7 |
note | first step in murein biosynthesis;UDP-N-glucosamine 1-carboxyvinyltransferase |
GO_process | GO:0009252 - peptidoglycan biosynthetic process |
experiment | N-terminus verified by Edman degradation: PMID 1512209 |
protein_id | NP_417656.1 |
gene | murA |
product | UDP-N-acetylglucosamine 1-carboxyvinyltransferase |
db_xref | GI:16131079 ASAP:ABE-0010479 UniProtKB/Swiss-Prot:P0A749 ECOCYC:EG11358 EcoGene:EG11358 GeneID:947703 |
Associated reactions(s) | |
R_UAGCVT (bigg2-eco41) | UDP-N-acetylglucosamine 1-carboxyvinyltransferase |
b3189 |
Matching Gene Information: b0759 | |
function | enzyme; Degradation of small molecules: Carbon compounds |
GO_component | GO:0005737 - cytoplasm |
GO_function | GO:0042280 - cell surface antigen activity, host-interacting |
gene_synonym | ECK0748; galD; JW0742 |
EC_number | 5.1.3.2 |
product | UDP-galactose-4-epimerase |
GO_process | GO:0016052 - carbohydrate catabolic process; GO:0009242 - colanic acid biosynthetic process; GO:0006012 - galactose metabolic process; GO:0009435 - NAD biosynthetic process; GO:0009269 - response to desiccation |
experiment | N-terminus verified by Edman degradation: PMID 4613352,9119048 |
protein_id | NP_415280.3 |
gene | galE |
db_xref | GI:49176045 ASAP:ABE-0002575 UniProtKB/Swiss-Prot:P09147 ECOCYC:EG10362 EcoGene:EG10362 GeneID:945354 |
Associated reactions(s) | |
R_UDPG4E (bigg2-eco41) | UDPglucose 4-epimerase |
b0759 |
Matching Gene Information: b2416 | |
function | enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols |
gene_synonym | ctr; ECK2411; JW2409 |
EC_number | 2.7.3.9 |
note | PEP-protein phosphotransferase system enzyme I |
GO_process | GO:0016052 - carbohydrate catabolic process |
experiment | N-terminus verified by Edman degradation: PMID 9298646 |
protein_id | NP_416911.1 |
gene | ptsI |
product | PEP-protein phosphotransferase of PTS system (enzyme I) |
db_xref | GI:16130342 ASAP:ABE-0007967 UniProtKB/Swiss-Prot:P08839 ECOCYC:EG10789 EcoGene:EG10789 GeneID:946879 |
Associated reactions(s) | |
R_GAMpts (bigg2-eco41) | D-glucosamine transport via PEP:Pyr PTS |
((b2416 and b1819 and b2415 and b1817 and b1818)) | |
R_FRUpts2 (bigg2-eco41) | Fructose transport via PEP:Pyr PTS (f6p generating) |
((b2416 and b1817 and b1819 and b2415 and b1818)) | |
R_GLCpts (bigg2-eco41) | D-glucose transport via PEP:Pyr PTS |
(((b2416 and b2417 and b2415 and b1101) or (b2416 and b1819 and b2415 and b1817 and b1818) or (b2416 and b2417 and b2415 and b1621))) | |
R_DHAPT (bigg2-eco41) | Dihydroxyacetone phosphotransferase |
((b2416 and b1200 and b2415 and b1198 and b1199)) | |
R_SUCpts (bigg2-eco41) | Sucrose transport via PEP:Pyr PTS |
((b2416 and b2417 and b2415 and b2429)) | |
R_TREpts (bigg2-eco41) | Trehalose transport via PEP:Pyr PTS |
((b2416 and b2417 and b2415 and b4240)) | |
R_FRUpts (bigg2-eco41) | D-fructose transport via PEP:Pyr PTS |
((b2416 and b2169 and b2415 and b2167)) | |
R_MANpts (bigg2-eco41) | D-mannose transport via PEP:Pyr PTS |
((b2416 and b1817 and b1819 and b2415 and b1818)) | |
R_ACGApts (bigg2-eco41) | N-Acetyl-D-glucosamine transport via PEP:Pyr PTS |
(((b2416 and b2415 and b0679) or (b2416 and b2417 and b2415 and b1101))) | |
R_MALTpts (bigg2-eco41) | Maltose transport via PEP:Pyr PTS |
((b2416 and b2417 and b2415 and b1621 and b4036)) | |
R_GALTpts (bigg2-eco41) | Galactitol transport via PEP:Pyr PTS |
((b2416 and b2092 and b2415 and b2094 and b2093)) | |
R_SBTpts (bigg2-eco41) | D-sorbitol transport via PEP:Pyr PTS |
((b2416 and b2703 and b2415 and b2704 and b2702)) | |
R_ACMANApts (bigg2-eco41) | N-acetyl-D-mannosamine transport via PTS |
((b2416 and b1819 and b2415 and b1817 and b1818)) | |
R_MNLpts (bigg2-eco41) | Mannitol transport via PEP:Pyr PTS |
((b2416 and b2415 and b3599)) |
Matching Gene Information: b2415 | |
function | enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols |
gene_synonym | ctr; ECK2410; Hpr; iex?; JW2408 |
note | PTS system protein HPr |
GO_process | GO:0016052 - carbohydrate catabolic process |
experiment | N-terminus verified by Edman degradation: PMID 9298646,9868784,10094700 |
gene | ptsH |
product | phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr) |
protein_id | NP_416910.1 |
db_xref | GI:16130341 ASAP:ABE-0007962 UniProtKB/Swiss-Prot:P0AA04 ECOCYC:EG10788 EcoGene:EG10788 GeneID:946886 |
Associated reactions(s) | |
R_GAMpts (bigg2-eco41) | D-glucosamine transport via PEP:Pyr PTS |
((b2416 and b1819 and b2415 and b1817 and b1818)) | |
R_FRUpts2 (bigg2-eco41) | Fructose transport via PEP:Pyr PTS (f6p generating) |
((b2416 and b1817 and b1819 and b2415 and b1818)) | |
R_GLCpts (bigg2-eco41) | D-glucose transport via PEP:Pyr PTS |
(((b2416 and b2417 and b2415 and b1101) or (b2416 and b1819 and b2415 and b1817 and b1818) or (b2416 and b2417 and b2415 and b1621))) | |
R_DHAPT (bigg2-eco41) | Dihydroxyacetone phosphotransferase |
((b2416 and b1200 and b2415 and b1198 and b1199)) | |
R_SUCpts (bigg2-eco41) | Sucrose transport via PEP:Pyr PTS |
((b2416 and b2417 and b2415 and b2429)) | |
R_TREpts (bigg2-eco41) | Trehalose transport via PEP:Pyr PTS |
((b2416 and b2417 and b2415 and b4240)) | |
R_FRUpts (bigg2-eco41) | D-fructose transport via PEP:Pyr PTS |
((b2416 and b2169 and b2415 and b2167)) | |
R_MANpts (bigg2-eco41) | D-mannose transport via PEP:Pyr PTS |
((b2416 and b1817 and b1819 and b2415 and b1818)) | |
R_ACGApts (bigg2-eco41) | N-Acetyl-D-glucosamine transport via PEP:Pyr PTS |
(((b2416 and b2415 and b0679) or (b2416 and b2417 and b2415 and b1101))) | |
R_MALTpts (bigg2-eco41) | Maltose transport via PEP:Pyr PTS |
((b2416 and b2417 and b2415 and b1621 and b4036)) | |
R_GALTpts (bigg2-eco41) | Galactitol transport via PEP:Pyr PTS |
((b2416 and b2092 and b2415 and b2094 and b2093)) | |
R_SBTpts (bigg2-eco41) | D-sorbitol transport via PEP:Pyr PTS |
((b2416 and b2703 and b2415 and b2704 and b2702)) | |
R_ACMANApts (bigg2-eco41) | N-acetyl-D-mannosamine transport via PTS |
((b2416 and b1819 and b2415 and b1817 and b1818)) | |
R_MNLpts (bigg2-eco41) | Mannitol transport via PEP:Pyr PTS |
((b2416 and b2415 and b3599)) |
Matching Gene Information: b1136 | |
function | enzyme; Energy metabolism, carbon: TCA cycle; Phage or Prophage Related |
gene_synonym | ECK1122; icdA; icdE; JW1122 |
EC_number | 1.1.1.42 |
note | isocitrate dehydrogenase, specific for NADP+ |
GO_process | GO:0009061 - anaerobic respiration; GO:0006099 - tricarboxylic acid cycle |
experiment | N-terminus verified by Edman degradation: PMID 9298646 |
protein_id | NP_415654.1 |
gene | icd |
product | e14 prophage; isocitrate dehydrogenase, specific for NADP+ |
db_xref | GI:16129099 ASAP:ABE-0003823 UniProtKB/Swiss-Prot:P08200 ECOCYC:EG10489 EcoGene:EG10489 GeneID:945702 |
Associated reactions(s) | |
R_ICDHyr (bigg2-eco41) | Isocitrate dehydrogenase (NADP) |
b1136 |
Matching Gene Information: b0333 | |
function | putative enzyme; Not classified |
GO_component | GO:0005737 - cytoplasm |
gene_synonym | ECK0330; JW0324; yahS; yzzD |
EC_number | 2.3.3.1 |
note | putative citrate synthase; propionate metabolism? |
GO_process | GO:0019395 - fatty acid oxidation |
gene | prpC |
product | 2-methylcitrate synthase |
protein_id | NP_414867.1 |
db_xref | GI:16128318 ASAP:ABE-0001148 UniProtKB/Swiss-Prot:P31660 ECOCYC:G6198 EcoGene:EG11756 GeneID:947528 |
Associated reactions(s) | |
R_MCITS (bigg2-eco41) | 2-methylcitrate synthase |
b0333 |
Matching Gene Information: b1276 | |
function | enzyme; Energy metabolism, carbon: TCA cycle |
gene_synonym | acn; ECK1271; JW1268 |
EC_number | 4.2.1.3 |
note | aconitate hydrase 1 |
GO_process | GO:0009061 - anaerobic respiration; GO:0006099 - tricarboxylic acid cycle |
gene | acnA |
product | aconitate hydratase 1 |
protein_id | NP_415792.1 |
db_xref | GI:16129237 ASAP:ABE-0004283 UniProtKB/Swiss-Prot:P25516 ECOCYC:EG11325 EcoGene:EG11325 GeneID:946724 |
Associated reactions(s) | |
R_MICITDr (bigg2-eco41) | 2-methylisocitrate dehydratase |
((b1276 or b0118)) | |
R_ACONT (bigg2-eco41) | Aconitate hydratase |
((b1276 or b0118)) |
Matching Gene Information: b1207 | |
function | enzyme; Purine ribonucleotide biosynthesis |
gene_synonym | dnaR; ECK1195; JW1198; prsA |
EC_number | 2.7.6.1 |
note | phosphoribosylpyrophosphate synthetase |
GO_process | GO:0009152 - purine ribonucleotide biosynthetic process |
gene | prs |
product | phosphoribosylpyrophosphate synthase |
protein_id | NP_415725.1 |
db_xref | GI:16129170 ASAP:ABE-0004054 UniProtKB/Swiss-Prot:P0A717 ECOCYC:EG10774 EcoGene:EG10774 GeneID:945772 |
Associated reactions(s) | |
R_PRPPS (bigg2-eco41) | Phosphoribosylpyrophosphate synthetase |
b1207 |
Matching Gene Information: b2530 | |
function | essential for the biosynthesis of 2-selenouridine in tRNA required for the biosynthesis of thiamin, NAD, Fe-S clusters, and thionucleosides 2.2.3 information transfer; RNA related; RNA modification |
gene_synonym | ECK2527; JW2514; nuvC; yfhO; yzzO |
EC_number | 2.8.1.7 |
note | cysteine desulfurase; cysteine desulfurase (tRNA sulfurtransferase) PLP-dependent |
GO_process | GO:0009451 - RNA modification |
experiment | N-terminus verified by Edman degradation: PMID 9298646 |
protein_id | YP_026169.1 |
gene | iscS |
product | cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent |
db_xref | GI:49176235 ASAP:ABE-0008324 UniProtKB/Swiss-Prot:P0A6B7 ECOCYC:G7325 EcoGene:EG12677 GeneID:947004 |
Associated reactions(s) | |
R_THZPSN (bigg2-eco41) | Thiazole phosphate synthesis |
((b3990 and b3991 and b3992 and b2530 and b4407 and b0423)) |
Matching Gene Information: b0811 | |
function | transport; Transport of small molecules: Amino acids, amines |
GO_component | GO:0042597 - periplasmic space |
gene_synonym | ECK0800; JW0796 |
note | periplasmic glutamine-binding protein; permease |
GO_process | GO:0006542 - glutamine biosynthetic process |
gene | glnH |
product | glutamine transporter subunit |
protein_id | NP_415332.1 |
db_xref | GI:16128779 ASAP:ABE-0002771 UniProtKB/Swiss-Prot:P0AEQ3 ECOCYC:EG10386 EcoGene:EG10386 GeneID:944872 |
Associated reactions(s) | |
R_GLNabc (bigg2-eco41) | L-glutamine transport via ABC system |
((b0810 and b0811 and b0809)) |
Matching Gene Information: b0381 | |
function | enzyme; Murein sacculus, peptidoglycan |
GO_component | GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall |
gene_synonym | ECK0376; JW0372 |
EC_number | 6.3.2.4 |
product | D-alanine-D-alanine ligase A |
GO_process | GO:0009252 - peptidoglycan biosynthetic process |
gene | ddlA |
protein_id | NP_414915.1 |
db_xref | GI:16128366 ASAP:ABE-0001309 UniProtKB/Swiss-Prot:P0A6J8 ECOCYC:EG10213 EcoGene:EG10213 GeneID:945313 |
Associated reactions(s) | |
R_ALAALAr (bigg2-eco41) | D-alanine-D-alanine ligase (reversible) |
((b0381 or b0092)) |
Matching Gene Information: b1261 | |
function | enzyme; Amino acid biosynthesis: Tryptophan |
GO_component | GO:0005737 - cytoplasm |
gene_synonym | ECK1255; JW1253 |
EC_number | 4.2.1.20 |
note | tryptophan synthase, beta protein |
GO_process | GO:0000162 - tryptophan biosynthetic process |
gene | trpB |
product | tryptophan synthase, beta subunit |
protein_id | NP_415777.1 |
db_xref | GI:16129222 ASAP:ABE-0004234 UniProtKB/Swiss-Prot:P0A879 ECOCYC:EG11025 EcoGene:EG11025 GeneID:945768 |
Associated reactions(s) | |
R_TRPS3 (bigg2-eco41) | Tryptophan synthase (indoleglycerol phosphate) |
((b1260 and b1261)) | |
R_TRPS1 (bigg2-eco41) | Tryptophan synthase (indoleglycerol phosphate) |
((b1260 and b1261)) | |
R_TRPS2 (bigg2-eco41) | Tryptophan synthase (indole) |
((b1260 and b1261)) |
Matching Gene Information: b0902 | |
function | enzyme; Energy metabolism, carbon: Anaerobic respiration |
GO_component | GO:0005737 - cytoplasm |
gene_synonym | act; ECK0893; JW0885 |
EC_number | 1.97.1.4 |
product | pyruvate formate lyase activating enzyme 1 |
GO_process | GO:0009061 - anaerobic respiration; GO:0006464 - protein modification process |
gene | pflA |
protein_id | NP_415422.1 |
db_xref | GI:16128869 ASAP:ABE-0003068 UniProtKB/Swiss-Prot:P0A9N4 ECOCYC:EG10028 EcoGene:EG10028 GeneID:945517 |
Associated reactions(s) | |
R_PFL (bigg2-eco41) | Pyruvate formate lyase |
((b3114 or (b3951 and b3952) or (b0902 and b0903))) | |
R_OBTFL (bigg2-eco41) | 2-Oxobutanoate formate lyase |
(((b0902 and b0903) or b3114)) |
Matching Gene Information: b3634 | |
function | putative enzyme; Not classified |
GO_function | GO:0042280 - cell surface antigen activity, host-interacting |
gene_synonym | ECK3624; JW3609; kdtB; yicA |
EC_number | 2.7.7.3 |
product | pantetheine-phosphate adenylyltransferase |
experiment | N-terminus verified by Edman degradation: PMID 10480925 |
protein_id | NP_418091.1 |
gene | coaD |
db_xref | GI:16131505 ASAP:ABE-0011875 UniProtKB/Swiss-Prot:P0A6I6 ECOCYC:EG11190 EcoGene:EG11190 GeneID:947386 |
Associated reactions(s) | |
R_PTPATi (bigg2-eco41) | Pantetheine-phosphate adenylyltransferase |
b3634 |
Matching Gene Information: b0242 | |
function | enzyme; Amino acid biosynthesis: Proline |
GO_component | GO:0005737 - cytoplasm |
gene_synonym | ECK0243; JW0232; pro |
EC_number | 2.7.2.11 |
product | gamma-glutamate kinase |
GO_process | GO:0006561 - proline biosynthetic process |
experiment | N-terminus verified by Edman degradation: PMID 6089111 |
protein_id | NP_414777.1 |
gene | proB |
db_xref | GI:16128228 ASAP:ABE-0000830 UniProtKB/Swiss-Prot:P0A7B5 ECOCYC:EG10768 EcoGene:EG10768 GeneID:946425 |
Associated reactions(s) | |
R_GLU5K (bigg2-eco41) | Glutamate 5-kinase |
b0242 |
Matching Gene Information: b1363 | |
function | transport; Transport of small molecules: Cations; Phage or Prophage Related |
GO_component | GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall |
gene_synonym | ECK1362; JW1358 |
product | Rac prophage; potassium transporter subunit |
gene | trkG |
protein_id | NP_415881.1 |
db_xref | GI:16129324 ASAP:ABE-0004567 UniProtKB/Swiss-Prot:P23849 ECOCYC:EG11020 EcoGene:EG11020 GeneID:945932 |
Associated reactions(s) | |
R_Kt2r (bigg2-eco41) | Potassium reversible transport via proton symport |
((b1363 or b3849)) |
Matching Gene Information: b0273 | |
function | enzyme; Amino acid biosynthesis: Arginine; Phage or Prophage Related |
GO_component | GO:0005737 - cytoplasm |
gene_synonym | Arg5; argD; ECK0274; JW0266 |
EC_number | 2.1.3.3 |
note | ornithine carbamoyltransferase 2, chain F |
GO_process | GO:0006526 - arginine biosynthetic process |
gene | argF |
product | ornithine carbamoyltransferase 2, chain F; CP4-6 prophage |
protein_id | NP_414807.1 |
db_xref | GI:16128258 ASAP:ABE-0000939 UniProtKB/Swiss-Prot:P06960 ECOCYC:EG10067 EcoGene:EG10067 GeneID:944844 |
Associated reactions(s) | |
R_OCBT (bigg2-eco41) | Ornithine carbamoyltransferase |
((b4254 or b0273)) |
Matching Gene Information: b3417 | |
function | enzyme; Degradation of small molecules: Carbon compounds |
gene_synonym | blu; ECK3404; JW5689; malA |
EC_number | 2.4.1.1 |
product | maltodextrin phosphorylase |
GO_process | GO:0016052 - carbohydrate catabolic process; GO:0000272 - polysaccharide catabolic process |
gene | malP |
protein_id | YP_026218.1 |
db_xref | GI:49176351 ASAP:ABE-0011154 UniProtKB/Swiss-Prot:P00490 ECOCYC:EG10560 EcoGene:EG10560 GeneID:947922 |
Associated reactions(s) | |
R_GLCP (bigg2-eco41) | Glycogen phosphorylase |
((b3428 or b3417)) | |
R_MLTP3 (bigg2-eco41) | Maltodextrin phosphorylase (maltoheptaose) |
b3417 | |
R_MLTP1 (bigg2-eco41) | Maltodextrin phosphorylase (maltopentaose) |
b3417 | |
R_MLTP2 (bigg2-eco41) | Maltodextrin phosphorylase (maltohexaose) |
b3417 |
Matching Gene Information: b0810 | |
function | transport; Transport of small molecules: Amino acids, amines |
GO_component | GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall |
gene_synonym | ECK0799; JW0795 |
note | glutamine high-affinity transport system; membrane component |
GO_process | GO:0006542 - glutamine biosynthetic process |
gene | glnP |
product | glutamine transporter subunit |
protein_id | NP_415331.1 |
db_xref | GI:16128778 ASAP:ABE-0002766 UniProtKB/Swiss-Prot:P0AEQ6 ECOCYC:EG10388 EcoGene:EG10388 GeneID:945621 |
Associated reactions(s) | |
R_GLNabc (bigg2-eco41) | L-glutamine transport via ABC system |
((b0810 and b0811 and b0809)) |
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