Installation
User Guide
Development / Hacking
PYME
PYME.Acquire
PYME.Acquire.acquiremainframe
PYME.Acquire.ActionManager
PYME.Acquire.autofocus
PYME.Acquire.eventLog
PYME.Acquire.ExecTools
PYME.Acquire.frameWrangler
PYME.Acquire.HDFSpooler
PYME.Acquire.HTTPHDFSpooler
PYME.Acquire.HTTPSpooler
PYME.Acquire.microscope
PYME.Acquire.positionTracker
PYME.Acquire.protocol
PYME.Acquire.PYMEAcquire
PYME.Acquire.QueueSpooler
PYME.Acquire.sampleInformation
PYME.Acquire.setup
PYME.Acquire.SpoolController
PYME.Acquire.Spooler
PYME.Acquire.stackSettings
PYME.Acquire.ui
PYME.Acquire.ui.actionUI
PYME.Acquire.ui.AnalysisSettingsUI
PYME.Acquire.ui.focus_lock_gui
PYME.Acquire.ui.HDFSpoolFrame
PYME.Acquire.ui.intsliders
PYME.Acquire.ui.lasersliders
PYME.Acquire.ui.multiview_select
PYME.Acquire.ui.positionUI
PYME.Acquire.ui.preflight
PYME.Acquire.ui.scanner_panel
PYME.Acquire.ui.selectCameraPanel
PYME.Acquire.ui.seqdialog
PYME.Acquire.ui.splashScreen
PYME.Acquire.ui.tile_panel
PYME.Acquire.ui.voxelSizeDialog
PYME.Acquire.Utils
PYME.Acquire.Utils.fastTiler
PYME.Acquire.Utils.MultiPointScanner
PYME.Acquire.Utils.pointScanner
PYME.Acquire.Utils.sarcSpacing
PYME.Acquire.Utils.strip_tiler
PYME.Acquire.Utils.tiler
PYME.Acquire.Utils.vibrationAnalysis
PYME.Acquire.zScanner
PYME.Analysis
PYME.Analysis.angleFilter
PYME.Analysis.annealThresh
PYME.Analysis.autoencoder_classifier
PYME.Analysis.binAvg
PYME.Analysis.BleachProfile
PYME.Analysis.BleachProfile.deMod
PYME.Analysis.BleachProfile.fitRecover
PYME.Analysis.BleachProfile.intensProf
PYME.Analysis.BleachProfile.kinModels
PYME.Analysis.BleachProfile.rawIntensity
PYME.Analysis.BleachProfile.rollins
PYME.Analysis.Colocalisation
PYME.Analysis.Colocalisation.colocScaleDep
PYME.Analysis.Colocalisation.correlationCoeffs
PYME.Analysis.Colocalisation.distColoc
PYME.Analysis.Colocalisation.edtColoc
PYME.Analysis.cramerRao
PYME.Analysis.density_filter
PYME.Analysis.deTile
PYME.Analysis.gen_sCMOS_maps
PYME.Analysis.graphing_filters
PYME.Analysis.implicitFilter
PYME.Analysis.MetaData
PYME.Analysis.optic_flow
PYME.Analysis.piecewise
PYME.Analysis.piecewiseMapping
PYME.Analysis.points
PYME.Analysis.points.arcfit
PYME.Analysis.points.arcfit.setup
PYME.Analysis.points.astigmatism
PYME.Analysis.points.astigmatism.astigTools
PYME.Analysis.points.astigmatism.setup
PYME.Analysis.points.cluster_morphology
PYME.Analysis.points.DeClump
PYME.Analysis.points.DeClump.deClumpGUI
PYME.Analysis.points.DeClump.pyDeClump
PYME.Analysis.points.DeClump.setup
PYME.Analysis.points.DeClump.testClump
PYME.Analysis.points.DistHist
PYME.Analysis.points.DistHist.distHistThreaded
PYME.Analysis.points.DistHist.setup
PYME.Analysis.points.EdgeDB
PYME.Analysis.points.EdgeDB.edges
PYME.Analysis.points.EdgeDB.edgeTest
PYME.Analysis.points.EdgeDB.segment
PYME.Analysis.points.EdgeDB.setup
PYME.Analysis.points.fiducials
PYME.Analysis.points.gen3DTriangs
PYME.Analysis.points.moments
PYME.Analysis.points.multiview
PYME.Analysis.points.objectMeasure
PYME.Analysis.points.qpaint
PYME.Analysis.points.QuadTree
PYME.Analysis.points.QuadTree.pointQT
PYME.Analysis.points.QuadTree.pointQTF
PYME.Analysis.points.QuadTree.QTrend
PYME.Analysis.points.QuadTree.qtUtils
PYME.Analysis.points.QuadTree.rendQT
PYME.Analysis.points.rings
PYME.Analysis.points.segmentLL
PYME.Analysis.points.setup
PYME.Analysis.points.SoftRend
PYME.Analysis.points.SoftRend.setup
PYME.Analysis.points.SoftRend.testTetrahedra
PYME.Analysis.points.spherical_harmonics
PYME.Analysis.points.surfit
PYME.Analysis.points.tCluster
PYME.Analysis.points.traveling_salesperson
PYME.Analysis.points.traveling_salesperson.sectioned_two_opt
PYME.Analysis.points.traveling_salesperson.sort
PYME.Analysis.points.traveling_salesperson.two_opt
PYME.Analysis.points.twoColour
PYME.Analysis.points.twoColourPlot
PYME.Analysis.processLogger
PYME.Analysis.profile_extraction
PYME.Analysis.PSFEst
PYME.Analysis.PSFEst.dec
PYME.Analysis.PSFEst.extractImages
PYME.Analysis.PSFEst.psfQuality
PYME.Analysis.PSFGen
PYME.Analysis.PSFGen.fourier
PYME.Analysis.PSFGen.fourierHNA
PYME.Analysis.PSFGen.fourierHNA2
PYME.Analysis.PSFGen.genCRBcurves
PYME.Analysis.PSFGen.nijboer_zernike
PYME.Analysis.PSFGen.setup
PYME.Analysis.PSFGen.test_ps_app
PYME.Analysis.setup
PYME.Analysis.svmSegment
PYME.Analysis.thresholding
PYME.Analysis.tile_pyramid
PYME.Analysis.Tracking
PYME.Analysis.Tracking.msd
PYME.Analysis.Tracking.tracking
PYME.Analysis.Tracking.trackUtils
PYME.Analysis.widefieldify
PYME.cluster
PYME.cluster.cluster_of_one
PYME.cluster.dataserver_wsgi
PYME.cluster.distribution
PYME.cluster.HTTPDataServer
PYME.cluster.HTTPRulePusher
PYME.cluster.HTTPTaskPusher
PYME.cluster.PYMERuleNodeServer
PYME.cluster.PYMERuleServer
PYME.cluster.rulenodeserver
PYME.cluster.ruleserver
PYME.cluster.taskWorkerHTTP
PYME.cluster.webdav
PYME.config
PYME.contrib
PYME.contrib.aniso
PYME.contrib.aniso.aniso
PYME.contrib.auiFloatBook
PYME.contrib.congrid
PYME.contrib.gohlke
PYME.contrib.gohlke.czifile
PYME.contrib.gohlke.fcsfiles
PYME.contrib.gohlke.setup
PYME.contrib.gohlke.tifffile
PYME.contrib.listctrlMixins
PYME.contrib.lzw
PYME.contrib.pad
PYME.contrib.pad.info_pad
PYME.contrib.pad.pad
PYME.contrib.setup
PYME.contrib.TextCtrlAutoComplete
PYME.contrib.wxPlotPanel
PYME.Deconv
PYME.Deconv.beadGen
PYME.Deconv.dec
PYME.Deconv.dec_test
PYME.Deconv.deconvDialogs
PYME.Deconv.decTask
PYME.Deconv.decThread
PYME.Deconv.experimental
PYME.Deconv.fftwWisdom
PYME.Deconv.richardsonLucy
PYME.Deconv.richardsonLucyMV
PYME.Deconv.richardsonLucyMVM
PYME.Deconv.test_block_dec
PYME.Deconv.tq_block_dec
PYME.Deconv.wiener
PYME.DSView
PYME.DSView.arrayViewPanel
PYME.DSView.displayOptions
PYME.DSView.DisplayOptionsPanel
PYME.DSView.displaySettingsPanel
PYME.DSView.dsviewer
PYME.DSView.eventLogViewer
PYME.DSView.fitInfo
PYME.DSView.htmlServe
PYME.DSView.logparser
PYME.DSView.LUT
PYME.DSView.LUT.setup
PYME.DSView.modules
PYME.DSView.modules.annotation
PYME.DSView.modules.arrayView
PYME.DSView.modules.blobFinding
PYME.DSView.modules.blobMeasure
PYME.DSView.modules.coloc
PYME.DSView.modules.composite
PYME.DSView.modules.convnet
PYME.DSView.modules.cropping
PYME.DSView.modules.dark_and_flatfield
PYME.DSView.modules.deconvolution
PYME.DSView.modules.eventView
PYME.DSView.modules.extractBlobs
PYME.DSView.modules.fastGraphPanel
PYME.DSView.modules.filtering
PYME.DSView.modules.fourierRingCorrelation
PYME.DSView.modules.graphViewPanel
PYME.DSView.modules.manualSegment
PYME.DSView.modules.measure
PYME.DSView.modules.measure.filterPan
PYME.DSView.modules.metadataView
PYME.DSView.modules.multithreshold
PYME.DSView.modules.playback
PYME.DSView.modules.prebleachExtraction
PYME.DSView.modules.profileFitting
PYME.DSView.modules.profilePlotting
PYME.DSView.modules.psfExtraction
PYME.DSView.modules.psfTools
PYME.DSView.modules.pupilTools
PYME.DSView.modules.pupilView
PYME.DSView.modules.segmentation
PYME.DSView.modules.sheetView
PYME.DSView.modules.shell
PYME.DSView.modules.sparkprepare
PYME.DSView.modules.splitter
PYME.DSView.modules.squiggleTools
PYME.DSView.modules.svmLabel
PYME.DSView.modules.synchronise
PYME.DSView.modules.tiling
PYME.DSView.modules.unmixing
PYME.DSView.modules.vis3D
PYME.DSView.modules.webview
PYME.DSView.overlays
PYME.DSView.OverlaysPanel
PYME.DSView.point_overlay
PYME.DSView.scrolledImagePanel
PYME.DSView.setup
PYME.DSView.splashScreen
PYME.DSView.voxSizeDialog
PYME.IO
PYME.IO.buffer_helpers
PYME.IO.buffers
PYME.IO.clusterDuplication
PYME.IO.clusterExport
PYME.IO.clusterGlob
PYME.IO.clusterIO
PYME.IO.clusterListing
PYME.IO.clusterResults
PYME.IO.clusterUpload
PYME.IO.countdir
PYME.IO.countdir.setup
PYME.IO.dataExporter
PYME.IO.DataSources
PYME.IO.DataSources.AlignDataSource
PYME.IO.DataSources.ArrayDataSource
PYME.IO.DataSources.BaseDataSource
PYME.IO.DataSources.BGSDataSource
PYME.IO.DataSources.BioformatsDataSource
PYME.IO.DataSources.BufferedDataSource
PYME.IO.DataSources.ClusterPZFDataSource
PYME.IO.DataSources.CropDataSource
PYME.IO.DataSources.DcimgDataSource
PYME.IO.DataSources.FlatFieldDataSource
PYME.IO.DataSources.HDFDataSource
PYME.IO.DataSources.HTTPDataSource
PYME.IO.DataSources.ImageSeriesDataSource
PYME.IO.DataSources.MultiviewDataSource
PYME.IO.DataSources.RandomDataSource
PYME.IO.DataSources.SupertileDatasource
PYME.IO.DataSources.TiffDataSource
PYME.IO.DataSources.TQDataSource
PYME.IO.DataSources.UnsplitDataSource
PYME.IO.dataWrap
PYME.IO.dcimg
PYME.IO.FileUtils
PYME.IO.FileUtils.compHdf
PYME.IO.FileUtils.fileID
PYME.IO.FileUtils.fnlGen
PYME.IO.FileUtils.freeSpace
PYME.IO.FileUtils.h5ExFrames
PYME.IO.FileUtils.h5rToTxt
PYME.IO.FileUtils.h5ToTiffSeries
PYME.IO.FileUtils.IJLut
PYME.IO.FileUtils.nameUtils
PYME.IO.FileUtils.ply
PYME.IO.FileUtils.RawToHdf5
PYME.IO.FileUtils.readSpeckle
PYME.IO.FileUtils.readTiff
PYME.IO.FileUtils.saveTiffStack
PYME.IO.FileUtils.setup
PYME.IO.FileUtils.SPAD
PYME.IO.FileUtils.stl
PYME.IO.FileUtils.thumbnailDatabase
PYME.IO.FileUtils.TiffSeqToHdf5
PYME.IO.h5File
PYME.IO.h5rFile
PYME.IO.image
PYME.IO.load_psf
PYME.IO.MetaDataHandler
PYME.IO.pyme_h5ls
PYME.IO.PZFFormat
PYME.IO.ragged
PYME.IO.rgb_image
PYME.IO.setup
PYME.IO.tabular
PYME.IO.testClusterSpooling
PYME.IO.unifiedIO
PYME.LMVis
PYME.LMVis.colourFilterGUI
PYME.LMVis.colourPanel
PYME.LMVis.displayPane
PYME.LMVis.dyeRatios
PYME.LMVis.editFilterDialog
PYME.LMVis.Extras
PYME.LMVis.Extras.animation
PYME.LMVis.Extras.clusterAnalysis
PYME.LMVis.Extras.dockedPanel
PYME.LMVis.Extras.extra_layers
PYME.LMVis.Extras.fiducial
PYME.LMVis.Extras.flagZMotionArtifacts
PYME.LMVis.Extras.fusionUtils
PYME.LMVis.Extras.multiColourAnalysis
PYME.LMVis.Extras.multiviewMapping
PYME.LMVis.Extras.objectMeasurements
PYME.LMVis.Extras.particleTracking
PYME.LMVis.Extras.perFrameVariable
PYME.LMVis.Extras.photophysics
PYME.LMVis.Extras.pointwiseColoc
PYME.LMVis.Extras.QPobjectSegment
PYME.LMVis.Extras.saved_views
PYME.LMVis.Extras.scaleBox
PYME.LMVis.Extras.sequentialSpecies
PYME.LMVis.Extras.setBGImage
PYME.LMVis.Extras.shiftmapGenerator
PYME.LMVis.Extras.showShortcuts
PYME.LMVis.Extras.spherical_harmonics
PYME.LMVis.Extras.subsets
PYME.LMVis.Extras.surface_fitting
PYME.LMVis.Extras.temperaturePlot
PYME.LMVis.Extras.vibration
PYME.LMVis.filterPane
PYME.LMVis.genImageDialog
PYME.LMVis.imageView
PYME.LMVis.imageView2
PYME.LMVis.importTextDialog
PYME.LMVis.objectDarkMeasure
PYME.LMVis.pipelineView
PYME.LMVis.progGraph
PYME.LMVis.renderers
PYME.LMVis.rendGauss
PYME.LMVis.setup
PYME.LMVis.setup_exe
PYME.LMVis.shader_programs
PYME.LMVis.shader_programs.shader_loader
PYME.LMVis.shader_programs.ShaderProgramFactory
PYME.LMVis.statusLog
PYME.LMVis.tests
PYME.LMVis.tests.gl_test_objects
PYME.LMVis.views
PYME.LMVis.visHelpers
PYME.LMVis.visHelpersMin
PYME.LMVis.workspaceTree
PYME.localization
PYME.localization.autopsf
PYME.localization.autopsf.autopsf
PYME.localization.autopsf.roifit
PYME.localization.cInterp
PYME.localization.cInterp.setup
PYME.localization.cModels
PYME.localization.cModels.setup
PYME.localization.FitFactories
PYME.localization.FitFactories.AstigGaussFitFR
PYME.localization.FitFactories.AstigGaussGPUFitFR
PYME.localization.FitFactories.BeadConvolvedAstigGaussFit
PYME.localization.FitFactories.ConfocCOIR
PYME.localization.FitFactories.DumbellFitR
PYME.localization.FitFactories.FFBase
PYME.localization.FitFactories.fitCommon
PYME.localization.FitFactories.Gauss3DFitR
PYME.localization.FitFactories.GaussFitConstrR
PYME.localization.FitFactories.GaussMultifitLinesR
PYME.localization.FitFactories.GaussMultifitR
PYME.localization.FitFactories.GaussMultifitSR
PYME.localization.FitFactories.InterpFitR
PYME.localization.FitFactories.InterpFitWFR
PYME.localization.FitFactories.Interpolators
PYME.localization.FitFactories.Interpolators.baseInterpolator
PYME.localization.FitFactories.Interpolators.CSInterpolator
PYME.localization.FitFactories.Interpolators.CubeSInterpolatorP
PYME.localization.FitFactories.Interpolators.CubicSplineInterpolator
PYME.localization.FitFactories.Interpolators.LinearInterpolator
PYME.localization.FitFactories.Interpolators.LinearPInterpolatorP
PYME.localization.FitFactories.LatFitCOIR
PYME.localization.FitFactories.LatGaussFitFR
PYME.localization.FitFactories.LatObjFindFR
PYME.localization.FitFactories.LatPSFFitR
PYME.localization.FitFactories.MultiviewFitInterpNR
PYME.localization.FitFactories.PRInterpFitQR
PYME.localization.FitFactories.PRInterpFitR
PYME.localization.FitFactories.ROIExtractNR
PYME.localization.FitFactories.SpecGaussFitFR
PYME.localization.FitFactories.SplitterFitCOIR
PYME.localization.FitFactories.SplitterFitFNR
PYME.localization.FitFactories.SplitterFitFusionR
PYME.localization.FitFactories.SplitterFitInterpBNR
PYME.localization.FitFactories.SplitterFitInterpNR
PYME.localization.FitFactories.SplitterMultifitSR
PYME.localization.FitFactories.SplitterObjFindR
PYME.localization.FitFactories.SplitterROIExtractNR
PYME.localization.FitFactories.SplitterShiftEstFR
PYME.localization.FitFactories.zEstimators
PYME.localization.FitFactories.zEstimators.astigEstimator
PYME.localization.FitFactories.zEstimators.biplaneEstimator
PYME.localization.FitFactories.zEstimators.genericDualEstimator
PYME.localization.FitFactories.zEstimators.genericEstimator
PYME.localization.FitFactories.zEstimators.priEstimator
PYME.localization.genmaps
PYME.localization.lev_gfit
PYME.localization.lev_gfit.setup
PYME.localization.MetaDataEdit
PYME.localization.ofind
PYME.localization.ofind3d
PYME.localization.ofind_nofilt
PYME.localization.ofind_pri
PYME.localization.ofind_split
PYME.localization.ofind_xcorr
PYME.localization.remFitBuf
PYME.localization.setup
PYME.localization.splitting
PYME.localization.Test
PYME.localization.Test.fitTestJig
PYME.localization.Test.fitTestJigSCMOS
PYME.localization.Test.fitTestJigWC
PYME.localization.traveling_salesperson
PYME.localization.twist
PYME.misc
PYME.misc.aligned_array
PYME.misc.aniso
PYME.misc.colorsys
PYME.misc.computerName
PYME.misc.coverslipGeometries
PYME.misc.cython_numpy_monkey
PYME.misc.depGraph
PYME.misc.dirSize
PYME.misc.diskCleanup
PYME.misc.django_widgets
PYME.misc.djangoRecarray
PYME.misc.editgrid
PYME.misc.eventSpy
PYME.misc.extraCMaps
PYME.misc.facsPlot
PYME.misc.fbpIcons
PYME.misc.fftw_compat
PYME.misc.findCycles
PYME.misc.fortran_interrupt_defeat
PYME.misc.glassModel
PYME.misc.hash32
PYME.misc.kdFit
PYME.misc.locate
PYME.misc.memUsage
PYME.misc.mock_ctypes
PYME.misc.mock_traits
PYME.misc.mock_traitsui
PYME.misc.pyme_zeroconf
PYME.misc.pyro_tracebacks
PYME.misc.read_agf
PYME.misc.sffake
PYME.misc.shellutils
PYME.misc.snells
PYME.misc.sqlitendarray
PYME.misc.startCommentify
PYME.misc.tempLogger
PYME.misc.tempMonitor
PYME.misc.TiffImagePlugin
PYME.misc.TiSettings
PYME.misc.wxThread
PYME.misc.zemax
PYME.misc.zernike
PYME.ParallelTasks
PYME.ParallelTasks.DSTaskQueue
PYME.ParallelTasks.fitMon
PYME.ParallelTasks.fitMonP
PYME.ParallelTasks.HDFTaskQueue
PYME.ParallelTasks.launchWorkers
PYME.ParallelTasks.setup_exe
PYME.ParallelTasks.taskDef
PYME.ParallelTasks.taskQueue
PYME.ParallelTasks.taskServerZC
PYME.ParallelTasks.taskWorkerZC
PYME.recipes
PYME.recipes.bakeshop
PYME.recipes.base
PYME.recipes.batchProcess
PYME.recipes.filters
PYME.recipes.fudges
PYME.recipes.graphing
PYME.recipes.localisations
PYME.recipes.machine_learning
PYME.recipes.measurement
PYME.recipes.modules
PYME.recipes.multiview
PYME.recipes.output
PYME.recipes.pointcloud
PYME.recipes.processing
PYME.recipes.recipeGui
PYME.recipes.recipeLayout
PYME.recipes.runRecipe
PYME.recipes.setup
PYME.recipes.surface_fitting
PYME.recipes.tablefilters
PYME.recipes.tracking
PYME.recipes.traits
PYME.recipes.vertical_recipe_display
PYME.resources
PYME.resources.setup
PYME.setup
PYME.setup_exe
PYME.simulation
PYME.simulation.locify
PYME.tileviewer
PYME.tileviewer.tileviewer
PYME.ui
PYME.ui.AUIFrame
PYME.ui.autoFoldPanel
PYME.ui.editList
PYME.ui.fastGraph
PYME.ui.histLimits
PYME.ui.manualFoldPanel
PYME.ui.MetadataTree
PYME.ui.mytimer
PYME.ui.recArrayView
PYME.update_version
PYME.util
PYME.util.execfile
PYME.util.fProfile
PYME.util.fProfile.convertProfile
PYME.util.fProfile.fProfile
PYME.util.fProfile.viewProfile
PYME.util.mProfile
PYME.util.mProfile.colorize_db_t
PYME.util.mProfile.mProfile
PYME.util.mProfile.p
PYME.util.mProfile.tProfile
PYME.util.shmarray
PYME.util.shmarray.shmarray
PYME.util.shmarray.shmTest
PYME.util.webframework
PYME.version