Preview

cobeylab-epidemic-deconvolution-babe8d0
- .gitignore
  
  41 Bytes
- .mailmap
  
  87 Bytes
- R
  - convolve_delay.R
    
    1.6 kB
  - deconvolve.R
    
    5.0 kB
  - seir.R
    
    5.7 kB
- README.md
  
  1.3 kB
- epinow2_tests
  - 01-make_SEIR_data.R
    
    2.0 kB
  - Test_epinow2_v2.Rmd
    
    14.4 kB
  - inf_to_obs.R
    
    5.4 kB
  - load_packages.R
    
    488 Bytes
  - make_SEIR_data.R
    
    2.0 kB
  - make_plots.R
    
    6.1 kB
  - plotfuns.R
    
    7.1 kB
  - simulation.R
    
    11.8 kB
  - true_pars.rds
    
    527 Bytes
- examples
  - bayesian-deconvolve-randomwalk.Rmd
    
    3.4 kB
  - bayesian-deconvolve-uncorrelated.Rmd
    
    3.3 kB
  - bayesian-rt-randomwalk.Rmd
    
    4.6 kB
  - ml-deconvolve-rl-goldstein.Rmd
    
    7.0 kB
- richardson-lucy-tests-LRM
  - RL-notebook.Rmd
    
    21.5 kB
  - RL-notebook_problems.Rmd
    
    20.9 kB
  - blind_deconv_edge_fix_does_not_run.Rmd
    
    28.3 kB
  - blind_deconv_runs_poor_performance.Rmd
    
    21.5 kB
  - funs_impute_obs_times.R
    
    5.4 kB
  - funs_simulation-sweep.R
    
    5.5 kB
  - simulation.R
    
    6.7 kB
  - util.R
    
    2.0 kB
- richlucy.Rproj
  
  205 Bytes
- stan
  - deconvolve-randomwalk.stan
    
    1.8 kB
  - deconvolve-uncorrelated.stan
    
    1.4 kB
  - rt-randomwalk.stan
    
    5.2 kB