Published November 14, 2020 | Version 1
Software Open

factorized pGENMi (fw-pGENMi)

Creators

  • 1. University of Illinois at Urbana-Champaign

Description

The codes used in the paper entitled "An Integrated multi-omics approach to identify regulatory mechanisms in cancer metastatic processes" are provided here.

pgenmi_torch.py contains the implementation of regularized pgenmi algorithm using pytorch library.

factpgenmi_torch.py contains the implementation of regularized factorized pgenmi algorithm using pytorch library.

To see how the training is done check "pgenmi_torch_final.py" and "factpgenmi_torch_final.py"

The codes and their documentation are also available at https://github.com/sabagh1994/fw-pGENMi

 

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