A wrapper for
summarise_taxa
prop_reads,
prop_reps,
prop_reads_and_reps and
hard_cutoff methods
core_methods(otu_table)
| otu_table | a dataframe of OTUs where the first row is the OTU ID and column names refer to sites |
|---|
a dataframe with all observed taxa, their inclusion to the core by method (delineated as a 1 or 0), the mean, variance, and coefficient of variation.
core_methods(arabidopsis)#> # A tibble: 59,560 x 6 #> X Mean Variance CV name value #> <chr> <dbl> <dbl> <dbl> <fct> <dbl> #> 1 OTU_100 0.368 0.707 1.92 Proportion of Sequence Reads 0 #> 2 OTU_100 0.368 0.707 1.92 Proportion of Sequence Reads and Repl… 0 #> 3 OTU_100 0.368 0.707 1.92 Hard Cut Off 0 #> 4 OTU_100 0.368 0.707 1.92 Proportion of Sequence Replicates 0 #> 5 OTU_1000 0.00694 0.00692 0.997 Proportion of Sequence Reads 0 #> 6 OTU_1000 0.00694 0.00692 0.997 Proportion of Sequence Reads and Repl… 0 #> 7 OTU_1000 0.00694 0.00692 0.997 Hard Cut Off 0 #> 8 OTU_1000 0.00694 0.00692 0.997 Proportion of Sequence Replicates 0 #> 9 OTU_10000 0.698 5.85 8.38 Proportion of Sequence Reads 0 #> 10 OTU_10000 0.698 5.85 8.38 Proportion of Sequence Reads and Repl… 0 #> # … with 59,550 more rows