build-last-errors="[]"
build-last-errors-base-dir="~/Documents/CoreMicro/"
build-last-outputs="[{\"output\":\"==> devtools::check(document = FALSE)\\n\\n\",\"type\":0},{\"output\":\"[36m──[39m [36mBuilding[39m [36m────────────────────[39m [36mCoreMicro[39m [36m──[39m\\n\",\"type\":1},{\"output\":\"[38;5;247mSetting env vars:[39m\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"● [38;5;247mCFLAGS    : -Wall -pedantic -fdiagnostics-color=always[39m\\n\",\"type\":1},{\"output\":\"● [38;5;247mCXXFLAGS  : -Wall -pedantic -fdiagnostics-color=always[39m\\n\",\"type\":1},{\"output\":\"● [38;5;247mCXX11FLAGS: -Wall -pedantic -fdiagnostics-color=always[39m\\n\",\"type\":1},{\"output\":\"[36m─────────────────────────────────────────────[39m\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"  \\r   checking for file ‘/Users/mayagans/Documents/CoreMicro/DESCRIPTION’ ...\\r  \\r[32m✓[39m  [38;5;247mchecking for file ‘/Users/mayagans/Documents/CoreMicro/DESCRIPTION’[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r\",\"type\":1},{\"output\":\"  \\r[38;5;247m─[39m[38;5;247m  [39m[38;5;247mpreparing ‘CoreMicro’:[39m[36m[36m (1.6s)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r[32m✓[39m  [38;5;247mchecking DESCRIPTION meta-information[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r\",\"type\":1},{\"output\":\"  \\r[38;5;247m─[39m[38;5;247m  [39m[38;5;247minstalling the package to build vignettes[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r\",\"type\":1},{\"output\":\"  \\r   creating vignettes ...\\r\",\"type\":1},{\"output\":\"  \\r\",\"type\":1},{\"output\":\"[32m✓[39m  [38;5;247mcreating vignettes[39m[36m[36m (47.2s)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r\",\"type\":1},{\"output\":\"  \\r[38;5;247m─[39m[38;5;247m  [39m[38;5;247mchecking for LF line-endings in source and make files and shell scripts[39m[36m[36m (502ms)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r[38;5;247m─[39m[38;5;247m  [39m[38;5;247mchecking for empty or unneeded directories[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r[38;5;247m─[39m[38;5;247m  [39m[38;5;247mlooking to see if a ‘data/datalist’ file should be added[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r\",\"type\":1},{\"output\":\"  \\r[38;5;247m─[39m[38;5;247m  [39m[38;5;247mbuilding ‘CoreMicro_0.0.1.tar.gz’[39m[36m[36m (9.2s)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r\",\"type\":1},{\"output\":\"  \\r   \\n\",\"type\":1},{\"output\":\"\\r\",\"type\":1},{\"output\":\"[36m──[39m [36mChecking[39m [36m────────────────────[39m [36mCoreMicro[39m [36m──[39m\\n\",\"type\":1},{\"output\":\"[38;5;247mSetting env vars:[39m\\n\",\"type\":1},{\"output\":\"● [38;5;247m_R_CHECK_CRAN_INCOMING_REMOTE_: FALSE[39m\\n\",\"type\":1},{\"output\":\"● [38;5;247m_R_CHECK_CRAN_INCOMING_       : FALSE[39m\\n\",\"type\":1},{\"output\":\"● [38;5;247m_R_CHECK_FORCE_SUGGESTS_      : FALSE[39m\\n\",\"type\":1},{\"output\":\"● [38;5;247mNOT_CRAN                      : true[39m\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"[36m── R CMD check ─────────────────────────────────────────────────────────────────[39m\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"  \\r[38;5;247m─[39m[38;5;247m  [39m[38;5;247musing log directory ‘/Users/mayagans/Documents/CoreMicro.Rcheck’[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r[38;5;247m─[39m[38;5;247m  [39m[38;5;247musing R version 3.6.2 (2019-12-12)[39m[36m[39m\\n\",\"type\":1},{\"output\":\"[38;5;247m─[39m[38;5;247m  [39m[38;5;247musing platform: x86_64-apple-darwin15.6.0 (64-bit)[39m[36m[39m\\n\",\"type\":1},{\"output\":\"[38;5;247m─[39m[38;5;247m  [39m[38;5;247musing session charset: UTF-8[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r\",\"type\":1},{\"output\":\"  \\r[38;5;247m─[39m[38;5;247m  [39m[38;5;247musing options ‘--no-manual --as-cran’[39m[36m[36m (360ms)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r[32m✓[39m  [38;5;247mchecking for file ‘CoreMicro/DESCRIPTION’[39m[36m[39m\\n\",\"type\":1},{\"output\":\"[38;5;247m─[39m[38;5;247m  [39m[38;5;247mchecking extension type ... Package[39m[36m[39m\\n\",\"type\":1},{\"output\":\"[38;5;247m─[39m[38;5;247m  [39m[38;5;247mthis is package ‘CoreMicro’ version ‘0.0.1’[39m[36m[39m\\n\",\"type\":1},{\"output\":\"[38;5;247m─[39m[38;5;247m  [39m[38;5;247mpackage encoding: UTF-8[39m[36m[39m\\n\",\"type\":1},{\"output\":\"   checking package namespace information ...\\r  \\r[32m✓[39m  [38;5;247mchecking package namespace information[39m[36m[39m\\n\",\"type\":1},{\"output\":\"   checking package dependencies ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking package dependencies[39m[36m[36m (4.8s)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r[32m✓[39m  [38;5;247mchecking if this is a source package[39m[36m[39m\\n\",\"type\":1},{\"output\":\"[32m✓[39m  [38;5;247mchecking if there is a namespace[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking for executable files ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking for executable files[39m[36m[36m (368ms)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r[32m✓[39m  [38;5;247mchecking for hidden files and directories[39m[36m[39m\\n\",\"type\":1},{\"output\":\"[32m✓[39m  [38;5;247mchecking for portable file names[39m[36m[39m\\n\",\"type\":1},{\"output\":\"[32m✓[39m  [38;5;247mchecking for sufficient/correct file permissions[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking serialization versions ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking serialization versions[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking whether package ‘CoreMicro’ can be installed ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking whether package ‘CoreMicro’ can be installed[39m[36m[36m (31.7s)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking installed package size ...\\r  \\r[34mN  [39m[34mchecking installed package size[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r     installed size is 18.2Mb\\n\",\"type\":1},{\"output\":\"     sub-directories of 1Mb or more:\\n\",\"type\":1},{\"output\":\"       data  17.8Mb\\n\",\"type\":1},{\"output\":\"\\r\",\"type\":1},{\"output\":\"  \\r   checking package directory ...\\r  \\r[32m✓[39m  [38;5;247mchecking package directory[39m[36m[39m\\n\",\"type\":1},{\"output\":\"   checking for future file timestamps ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking for future file timestamps[39m[36m[36m (931ms)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r[32m✓[39m  [38;5;247mchecking ‘build’ directory[39m[36m[39m\\n\",\"type\":1},{\"output\":\"   checking DESCRIPTION meta-information ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking DESCRIPTION meta-information[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r[32m✓[39m  [38;5;247mchecking top-level files[39m[36m[39m\\n\",\"type\":1},{\"output\":\"   checking for left-over files ...\\r  \\r[32m✓[39m  [38;5;247mchecking for left-over files[39m[36m[39m\\n\",\"type\":1},{\"output\":\"   checking index information ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking index information[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking package subdirectories ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking package subdirectories[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking R files for non-ASCII characters ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking R files for non-ASCII characters[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking R files for syntax errors ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking R files for syntax errors[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking whether the package can be loaded ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking whether the package can be loaded[39m[36m[36m (553ms)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking whether the package can be loaded with stated dependencies ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking whether the package can be loaded with stated dependencies[39m[36m[36m (478ms)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking whether the package can be unloaded cleanly ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking whether the package can be unloaded cleanly[39m[36m[36m (493ms)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking whether the namespace can be loaded with stated dependencies ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking whether the namespace can be loaded with stated dependencies[39m[36m[36m (487ms)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking whether the namespace can be unloaded cleanly ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking whether the namespace can be unloaded cleanly[39m[36m[36m (550ms)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking dependencies in R code ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking dependencies in R code[39m[36m[36m (824ms)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking S3 generic/method consistency ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking S3 generic/method consistency[39m[36m[36m (6.5s)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking replacement functions ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking replacement functions[39m[36m[36m (508ms)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking foreign function calls ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking foreign function calls[39m[36m[36m (532ms)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking R code for possible problems ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking R code for possible problems[39m[36m[36m (3.3s)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking Rd files ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking Rd files[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking Rd metadata ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking Rd metadata[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking Rd line widths ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking Rd line widths[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking Rd cross-references ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking Rd cross-references[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking for missing documentation entries ...\\r\",\"type\":1},{\"output\":\"  \\r[35mW  [39m[35mchecking for missing documentation entries[39m[36m[36m (11.2s)[36m[39m\\n\",\"type\":1},{\"output\":\"   Undocumented code objects:\\n\",\"type\":1},{\"output\":\"     ‘human_working_set’\\n\",\"type\":1},{\"output\":\"   Undocumented data sets:\\n\",\"type\":1},{\"output\":\"     ‘human_working_set’\\n\",\"type\":1},{\"output\":\"\\r  \\r   All user-level objects in a package should have documentation entries.\\n\",\"type\":1},{\"output\":\"   See chapter ‘Writing R documentation files’ in the ‘Writing R\\n\",\"type\":1},{\"output\":\"   Extensions’ manual.\\n\",\"type\":1},{\"output\":\"   checking for code/documentation mismatches ...\\r\",\"type\":1},{\"output\":\"  \\r[35mW  [39m[35mchecking for code/documentation mismatches[39m[36m[36m (6.1s)[36m[39m\\n\",\"type\":1},{\"output\":\"   Data with usage in documentation object 'human_ps' but not in code:\\n\",\"type\":1},{\"output\":\"     ‘human_working_set_ps’\\n\",\"type\":1},{\"output\":\"   \\n\",\"type\":1},{\"output\":\"\\r\",\"type\":1},{\"output\":\"  \\r   checking Rd \\\\usage sections ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking Rd \\\\usage sections[39m[36m[36m (7.8s)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking Rd contents ...\\r\",\"type\":1},{\"output\":\"  \\r\",\"type\":1},{\"output\":\"[32m✓[39m  [38;5;247mchecking Rd contents[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking for unstated dependencies in examples ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking for unstated dependencies in examples[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r[32m✓[39m  [38;5;247mchecking contents of ‘data’ directory[39m[36m[39m\\n\",\"type\":1},{\"output\":\"   checking data for non-ASCII characters ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking data for non-ASCII characters[39m[36m[36m (13.5s)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking data for ASCII and uncompressed saves ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking data for ASCII and uncompressed saves[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking installed files from ‘inst/doc’ ...\\r  \\r[32m✓[39m  [38;5;247mchecking installed files from ‘inst/doc’[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking files in ‘vignettes’ ...\\r  \\r[32m✓[39m  [38;5;247mchecking files in ‘vignettes’[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking examples ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking examples[39m[36m[36m (22s)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   Examples with CPU or elapsed time > 5s\\n\",\"type\":1},{\"output\":\"\\r  \\r                 user system elapsed\\n\",\"type\":1},{\"output\":\"   arabidopsis  5.285  0.626   5.946\\n\",\"type\":1},{\"output\":\"   core_methods 4.909  0.582   5.516\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking for unstated dependencies in ‘tests’ ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking for unstated dependencies in ‘tests’[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking tests ...\\r\",\"type\":1},{\"output\":\"  \\r[38;5;247m─[39m[38;5;247m  [39m[38;5;247mchecking tests[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   Running ‘testthat.R’\\r\",\"type\":1},{\"output\":\"  \\r\\r  \\r[32m✓[39m[38;5;247m  Running ‘testthat.R’[39m[36m[36m (2.9s)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking for unstated dependencies in vignettes ...\\r\",\"type\":1},{\"output\":\"  \\r[34mN  [39m[34mchecking for unstated dependencies in vignettes[39m[36m[36m (3.1s)[36m[39m\\n\",\"type\":1},{\"output\":\"   'library' or 'require' calls not declared from:\\n\",\"type\":1},{\"output\":\"     ‘backbone’ ‘igraph’ ‘parallelDist’ ‘tidyverse’ ‘vegan’ ‘visNetwork’\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking package vignettes in ‘inst/doc’ ...\\r  \\r[32m✓[39m  [38;5;247mchecking package vignettes in ‘inst/doc’[39m[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r   checking re-building of vignette outputs ...\\r\",\"type\":1},{\"output\":\"  \\r[32m✓[39m  [38;5;247mchecking re-building of vignette outputs[39m[36m[36m (16.8s)[36m[39m\\n\",\"type\":1},{\"output\":\"\\r  \\r[32m✓[39m  [38;5;247mchecking for detritus in the temp directory[39m[36m[39m\\n\",\"type\":1},{\"output\":\"   \\n\",\"type\":1},{\"output\":\"   See\\n\",\"type\":1},{\"output\":\"     ‘/Users/mayagans/Documents/CoreMicro.Rcheck/00check.log’\\n\",\"type\":1},{\"output\":\"   for details.\\n\",\"type\":1},{\"output\":\"   \\n\",\"type\":1},{\"output\":\"   \\n\",\"type\":1},{\"output\":\"\\r\",\"type\":1},{\"output\":\"[36m── R CMD check results ──────────────────────────────────── CoreMicro 0.0.1 ────[39m\\n\",\"type\":1},{\"output\":\"Duration: 2m 16.2s\\n\",\"type\":1},{\"output\":\"\\n\",\"type\":1},{\"output\":\"[35m> checking for missing documentation entries ... WARNING[39m\\n\",\"type\":1},{\"output\":\"  Undocumented code objects:\\n\",\"type\":1},{\"output\":\"    ‘human_working_set’\\n\",\"type\":1},{\"output\":\"  Undocumented data sets:\\n\",\"type\":1},{\"output\":\"    ‘human_working_set’\\n\",\"type\":1},{\"output\":\"  All user-level objects in a package should have documentation entries.\\n\",\"type\":1},{\"output\":\"  See chapter ‘Writing R documentation files’ in the ‘Writing R\\n\",\"type\":1},{\"output\":\"  Extensions’ manual.\\n\",\"type\":1},{\"output\":\"\\n\",\"type\":1},{\"output\":\"[35m> checking for code/documentation mismatches ... WARNING[39m\\n\",\"type\":1},{\"output\":\"  Data with usage in documentation object 'human_ps' but not in code:\\n\",\"type\":1},{\"output\":\"    ‘human_working_set_ps’\\n\",\"type\":1},{\"output\":\"\\n\",\"type\":1},{\"output\":\"[34m> checking installed package size ... NOTE[39m\\n\",\"type\":1},{\"output\":\"    installed size is 18.2Mb\\n\",\"type\":1},{\"output\":\"    sub-directories of 1Mb or more:\\n\",\"type\":1},{\"output\":\"      data  17.8Mb\\n\",\"type\":1},{\"output\":\"\\n\",\"type\":1},{\"output\":\"[34m> checking for unstated dependencies in vignettes ... NOTE[39m\\n\",\"type\":1},{\"output\":\"  'library' or 'require' calls not declared from:\\n\",\"type\":1},{\"output\":\"    ‘backbone’ ‘igraph’ ‘parallelDist’ ‘tidyverse’ ‘vegan’ ‘visNetwork’\\n\",\"type\":1},{\"output\":\"\\n\",\"type\":1},{\"output\":\"[32m0 errors ✓[39m | [31m2 warnings x[39m | [31m2 notes x[39m\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"Error: R CMD check found WARNINGs\\n\",\"type\":2},{\"output\":\"Execution halted\\n\",\"type\":1},{\"output\":\"\",\"type\":1},{\"output\":\"\\nExited with status 1.\\n\\n\",\"type\":2}]"
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