Preview

CliMA-Oceananigans.jl-607aabb
- .buildkite
  - pipeline.yml
    
    7.4 kB
- .github
  - workflows
    - CompatHelper.yml
      
      466 Bytes
    - TagBot.yml
      
      204 Bytes
- .gitignore
  
  428 Bytes
- .travis.yml
  
  646 Bytes
- CONTRIBUTING.md
  
  5.4 kB
- Dockerfile
  
  266 Bytes
- LICENSE
  
  1.1 kB
- Manifest.toml
  
  10.6 kB
- Project.toml
  
  2.0 kB
- README.md
  
  11.1 kB
- benchmark
  - benchmark_advection_schemes.jl
    
    1.4 kB
  - benchmark_channel.jl
    
    2.3 kB
  - benchmark_ffts.jl
    
    3.5 kB
  - benchmark_forcing_functions.jl
    
    3.6 kB
  - benchmark_pressure_solvers.jl
    
    1.6 kB
  - benchmark_static_ocean.jl
    
    2.2 kB
  - benchmark_time_steppers.jl
    
    1.3 kB
  - benchmark_tracers.jl
    
    2.1 kB
  - benchmark_turbulence_closures.jl
    
    1.4 kB
  - benchmark_utils.jl
    
    912 Bytes
- codecov.yml
  
  207 Bytes
- docs
  - Manifest.toml
    
    15.6 kB
  - Project.toml
    
    358 Bytes
  - bibliography.jl
    
    1.1 kB
  - citations.jl
    
    2.5 kB
  - make.jl
    
    5.9 kB
  - make_example.jl
    
    2.2 kB
  - oceananigans.bib
    
    25.0 kB
  - src
    - appendix
      - fractional_step.md
        
        2.7 kB
      - staggered_grid.md
        
        4.8 kB
    - benchmarks.md
      
      16.6 kB
    - contributing.md
      
      5.4 kB
    - function_index.md
      
      27 Bytes
    - gallery.md
      
      4.6 kB
    - index.md
      
      1.4 kB
    - installation_instructions.md
      
      1.2 kB
    - library.md
      
      6.4 kB
    - model_setup
      - architecture.md
        
        580 Bytes
      - background_fields.md
        
        3.6 kB
      - boundary_conditions.md
        
        12.7 kB
      - buoyancy_and_equation_of_state.md
        
        6.2 kB
      - checkpointing.md
        
        2.2 kB
      - clock.md
        
        1.2 kB
      - coriolis.md
        
        3.8 kB
      - diagnostics.md
        
        3.0 kB
      - forcing_functions.md
        
        10.4 kB
      - grids.md
        
        4.9 kB
      - number_type.md
        
        1.1 kB
      - output_writers.md
        
        5.1 kB
      - overview.md
        
        630 Bytes
      - setting_initial_conditions.md
        
        1.1 kB
      - time_stepping.md
        
        1.9 kB
      - tracers.md
        
        2.7 kB
      - turbulent_diffusivity_closures_and_les_models.md
        
        2.5 kB
    - numerical_implementation
      - assets
        
        staggered_grid.png
        
        126.7 kB
      - boundary_conditions.md
        
        5.5 kB
      - finite_volume.md
        
        1.9 kB
      - large_eddy_simulation.md
        
        7.7 kB
      - poisson_solvers.md
        
        10.0 kB
      - pressure_decomposition.md
        
        1.6 kB
      - spatial_operators.md
        
        8.0 kB
      - time_stepping.md
        
        3.9 kB
      - turbulence_closures.md
        
        4.8 kB
    - physics
      - boundary_conditions.md
        
        1.3 kB
      - buoyancy_and_equations_of_state.md
        
        1.4 kB
      - coriolis_forces.md
        
        2.7 kB
      - navier_stokes_and_tracer_conservation.md
        
        6.7 kB
      - surface_gravity_waves.md
        
        2.9 kB
      - turbulence_closures.md
        
        7.8 kB
    - references.md
      
      35 Bytes
    - using_gpus.md
      
      3.4 kB
    - verification
      - convergence_plots
        
        cosine_advection_diffusion_error_convergence.png
        
        430.6 kB
        
        cosine_advection_diffusion_solutions.png
        
        1.4 MB
        
        forced_fixed_slip_convergence.png
        
        222.0 kB
        
        forced_free_slip_convergence.png
        
        214.0 kB
        
        gaussian_advection_diffusion_error_convergence.png
        
        375.0 kB
        
        gaussian_advection_diffusion_solutions.png
        
        1.1 MB
        
        point_exponential_decay_time_stepper_convergence.png
        
        256.3 kB
        
        taylor_green_convergence.png
        
        209.4 kB
        
        two_dimensional_diffusion_convergence.png
        
        282.2 kB
      - convergence_tests.md
        
        9.7 kB
      - free_convection.md
        
        0 Bytes
      - lid_driven_cavity.md
        
        3.7 kB
      - plots_stratified_couette_flow_stratified_couette_flow_LES_profiles.png
        
        185.9 kB
      - plots_stratified_couette_flow_stratified_couette_flow_Re_Nu_scatter.png
        
        69.7 kB
      - plots_stratified_couette_flow_stratified_couette_flow_Re_Nu_timeseries.png
        
        294.8 kB
      - plots_stratified_couette_flow_stratified_couette_flow_velocity_temperature_profiles.png
        
        107.3 kB
      - plots_stratified_couette_flow_stratified_couette_flow_velocity_temperature_slices.png
        
        479.7 kB
      - stratified_couette_flow.md
        
        3.1 kB
- examples
  - eady_turbulence.jl
    
    16.6 kB
  - internal_wave.jl
    
    6.4 kB
  - langmuir_turbulence.jl
    
    10.4 kB
  - ocean_convection_with_plankton.jl
    
    3.9 kB
  - ocean_wind_mixing_and_convection.jl
    
    8.7 kB
  - one_dimensional_diffusion.jl
    
    4.1 kB
  - two_dimensional_turbulence.jl
    
    2.8 kB
- paper
  - free_convection_and_baroclinic_instability.png
    
    1.4 MB
  - paper.bib
    
    4.1 kB
  - paper.md
    
    5.4 kB
- src
  - AbstractOperations
    - AbstractOperations.jl
      
      2.0 kB
    - at.jl
      
      963 Bytes
    - averages_of_operations.jl
      
      1.3 kB
    - binary_operations.jl
      
      6.6 kB
    - computations.jl
      
      5.3 kB
    - derivatives.jl
      
      3.8 kB
    - grid_validation.jl
      
      1.2 kB
    - multiary_operations.jl
      
      6.2 kB
    - show_abstract_operations.jl
      
      3.1 kB
    - unary_operations.jl
      
      4.0 kB
  - Advection
    - Advection.jl
      
      1.4 kB
    - centered_advective_fluxes.jl
      
      3.0 kB
    - centered_fourth_order.jl
      
      1.6 kB
    - centered_second_order.jl
      
      2.0 kB
    - momentum_advection_operators.jl
      
      2.3 kB
    - topologically_conditional_interpolation.jl
      
      2.3 kB
    - tracer_advection_operators.jl
      
      772 Bytes
    - upwind_biased_advective_fluxes.jl
      
      5.1 kB
    - upwind_biased_fifth_order.jl
      
      3.0 kB
    - upwind_biased_third_order.jl
      
      2.5 kB
    - weno_fifth_order.jl
      
      13.2 kB
    - weno_nth_order.jl
      
      5.4 kB
    - weno_reconstruction.jl
      
      5.7 kB
  - Architectures.jl
    
    1.2 kB
  - BoundaryConditions
    - BoundaryConditions.jl
      
      1.4 kB
    - apply_flux_bcs.jl
      
      6.0 kB
    - boundary_condition.jl
      
      4.3 kB
    - boundary_condition_types.jl
      
      2.4 kB
    - boundary_function.jl
      
      2.2 kB
    - coordinate_boundary_conditions.jl
      
      388 Bytes
    - field_boundary_conditions.jl
      
      11.0 kB
    - fill_halo_regions.jl
      
      1.5 kB
    - fill_halo_regions_flat.jl
      
      803 Bytes
    - fill_halo_regions_flux.jl
      
      2.2 kB
    - fill_halo_regions_normal_flow.jl
      
      1.9 kB
    - fill_halo_regions_periodic.jl
      
      1.1 kB
    - fill_halo_regions_value_gradient.jl
      
      5.6 kB
    - parameterized_boundary_condition.jl
      
      1.3 kB
    - show_boundary_conditions.jl
      
      1.6 kB
    - zero_halo_regions.jl
      
      2.1 kB
  - Buoyancy
    - Buoyancy.jl
      
      2.6 kB
    - buoyancy_field.jl
      
      4.1 kB
    - linear_equation_of_state.jl
      
      2.6 kB
    - nonlinear_equation_of_state.jl
      
      2.9 kB
    - seawater_buoyancy.jl
      
      6.8 kB
  - Coriolis
    - Coriolis.jl
      
      738 Bytes
    - beta_plane.jl
      
      2.0 kB
    - f_plane.jl
      
      1.7 kB
    - no_rotation.jl
      
      314 Bytes
    - non_traditional_beta_plane.jl
      
      3.5 kB
    - non_traditional_f_plane.jl
      
      2.6 kB
  - Diagnostics
    - Diagnostics.jl
      
      350 Bytes
    - average.jl
      
      3.5 kB
    - cfl.jl
      
      1.7 kB
    - field_maximum.jl
      
      656 Bytes
    - nan_checker.jl
      
      895 Bytes
    - time_series.jl
      
      3.8 kB
  - Fields
    - Fields.jl
      
      1.3 kB
    - abstract_field.jl
      
      5.8 kB
    - averaged_field.jl
      
      3.1 kB
    - background_fields.jl
      
      2.2 kB
    - computed_field.jl
      
      3.2 kB
    - field.jl
      
      4.7 kB
    - field_tuples.jl
      
      6.2 kB
    - function_field.jl
      
      3.9 kB
    - new_data.jl
      
      2.6 kB
    - pressure_field.jl
      
      256 Bytes
    - reduced_field.jl
      
      4.1 kB
    - set!.jl
      
      4.5 kB
    - show_fields.jl
      
      784 Bytes
    - tracer_names.jl
      
      560 Bytes
    - validate_field_tuple_grid.jl
      
      748 Bytes
    - zero_field.jl
      
      132 Bytes
  - Forcings
    - Forcings.jl
      
      280 Bytes
    - continuous_forcing.jl
      
      7.7 kB
    - discrete_forcing.jl
      
      2.1 kB
    - forcing.jl
      
      5.5 kB
    - model_forcing.jl
      
      2.3 kB
    - relaxation.jl
      
      5.4 kB
  - Grids
    - Grids.jl
      
      1.8 kB
    - grid_utils.jl
      
      10.2 kB
    - input_validation.jl
      
      4.5 kB
    - regular_cartesian_grid.jl
      
      9.5 kB
    - vertically_stretched_cartesian_grid.jl
      
      4.9 kB
  - Logger.jl
    
    2.9 kB
  - Models
    - Models.jl
      
      1.3 kB
    - clock.jl
      
      1.9 kB
    - incompressible_model.jl
      
      6.8 kB
    - non_dimensional_model.jl
      
      1.2 kB
    - show_models.jl
      
      659 Bytes
  - Oceananigans.jl
    
    4.4 kB
  - Operators
    - Operators.jl
      
      2.0 kB
    - README
      
      1.7 kB
    - areas_and_volumes.jl
      
      2.0 kB
    - derivative_operators.jl
      
      4.3 kB
    - difference_operators.jl
      
      4.3 kB
    - divergence_operators.jl
      
      2.4 kB
    - interpolation_operators.jl
      
      6.2 kB
    - interpolation_utils.jl
      
      2.0 kB
    - laplacian_operators.jl
      
      2.2 kB
  - OutputWriters
    - OutputWriters.jl
      
      728 Bytes
    - checkpointer.jl
      
      8.7 kB
    - fetch_output.jl
      
      647 Bytes
    - field_slicer.jl
      
      3.0 kB
    - jld2_output_writer.jl
      
      10.6 kB
    - netcdf_output_writer.jl
      
      15.3 kB
    - output_writer_utils.jl
      
      4.8 kB
    - windowed_time_average.jl
      
      5.2 kB
  - Simulations
    - Simulations.jl
      
      481 Bytes
    - run.jl
      
      3.4 kB
    - simulation.jl
      
      4.1 kB
    - time_step_wizard.jl
      
      1.7 kB
  - Solvers
    - Solvers.jl
      
      783 Bytes
    - batched_tridiagonal_solver.jl
      
      4.0 kB
    - box_pressure_solver.jl
      
      2.3 kB
    - channel_pressure_solver.jl
      
      6.7 kB
    - discrete_eigenvalues.jl
      
      2.9 kB
    - horizontally_periodic_pressure_solver.jl
      
      6.8 kB
    - index_permutations.jl
      
      1.6 kB
    - plan_transforms.jl
      
      1.4 kB
    - pressure_solver.jl
      
      1.8 kB
    - solve_for_pressure.jl
      
      1.8 kB
    - solver_utils.jl
      
      116 Bytes
    - triply_periodic_pressure_solver.jl
      
      4.1 kB
  - SurfaceWaves.jl
    
    2.7 kB
  - TimeSteppers
    - TimeSteppers.jl
      
      1.5 kB
    - generic_time_stepping.jl
      
      5.0 kB
    - quasi_adams_bashforth_2.jl
      
      4.2 kB
    - runge_kutta_3.jl
      
      6.3 kB
    - time_stepping_kernels.jl
      
      10.2 kB
    - velocity_and_tracer_tendencies.jl
      
      10.5 kB
  - TurbulenceClosures
    - TurbulenceClosures.jl
      
      5.8 kB
    - closure_operators.jl
      
      5.9 kB
    - closure_tuples.jl
      
      1.3 kB
    - diffusion_operators.jl
      
      2.0 kB
    - diffusivity_fields.jl
      
      2.9 kB
    - turbulence_closure_diagnostics.jl
      
      4.6 kB
    - turbulence_closure_implementations
      - anisotropic_biharmonic_diffusivity.jl
        
        3.5 kB
      - anisotropic_diffusivity.jl
        
        3.6 kB
      - blasius_smagorinsky.jl
        
        4.8 kB
      - isotropic_diffusivity.jl
        
        2.6 kB
      - leith_enstrophy_diffusivity.jl
        
        8.7 kB
      - nothing_closure.jl
        
        530 Bytes
      - rozema_anisotropic_minimum_dissipation.jl
        
        7.7 kB
      - smagorinsky_lilly.jl
        
        9.4 kB
      - verstappen_anisotropic_minimum_dissipation.jl
        
        15.2 kB
    - turbulence_closure_utils.jl
      
      923 Bytes
    - velocity_tracer_gradients.jl
      
      9.6 kB
    - viscous_dissipation_operators.jl
      
      6.1 kB
  - Utils
    - Utils.jl
      
      1.1 kB
    - adapt_structure.jl
      
      425 Bytes
    - automatic_halo_sizing.jl
      
      606 Bytes
    - cell_advection_timescale.jl
      
      581 Bytes
    - kernel_launching.jl
      
      2.8 kB
    - ordered_dict_show.jl
      
      658 Bytes
    - output_writer_diagnostic_utils.jl
      
      2.3 kB
    - pretty_filesize.jl
      
      708 Bytes
    - pretty_time.jl
      
      1.0 kB
    - tuple_utils.jl
      
      574 Bytes
    - units.jl
      
      2.8 kB
    - versioninfo.jl
      
      1.1 kB
    - with_tracers.jl
      
      1.3 kB
- test
  - regression_tests
    - data
      - ocean_large_eddy_simulation_SmagorinskyLilly_iteration10000.jld2
        
        736.2 kB
      - ocean_large_eddy_simulation_SmagorinskyLilly_iteration10010.jld2
        
        736.2 kB
      - ocean_large_eddy_simulation_VerstappenAnisotropicMinimumDissipation_iteration10000.jld2
        
        736.2 kB
      - ocean_large_eddy_simulation_VerstappenAnisotropicMinimumDissipation_iteration10010.jld2
        
        736.2 kB
      - rayleigh_benard_iteration1000.jld2
        
        729.8 kB
      - rayleigh_benard_iteration1100.jld2
        
        729.8 kB
      - thermal_bubble_regression.nc
        
        372.9 kB
    - ocean_large_eddy_simulation_regression_test.jl
      
      5.0 kB
    - rayleigh_benard_regression_test.jl
      
      5.4 kB
    - thermal_bubble_regression_test.jl
      
      2.5 kB
  - runtests.jl
    
    3.4 kB
  - runtests_utils.jl
    
    2.6 kB
  - test_abstract_operations.jl
    
    21.5 kB
  - test_averaged_field.jl
    
    3.0 kB
  - test_benchmarks.jl
    
    2.8 kB
  - test_boundary_conditions.jl
    
    13.4 kB
  - test_buoyancy.jl
    
    4.2 kB
  - test_convergence.jl
    
    1.8 kB
  - test_coriolis.jl
    
    5.2 kB
  - test_diagnostics.jl
    
    8.8 kB
  - test_dynamics.jl
    
    13.5 kB
  - test_fields.jl
    
    7.6 kB
  - test_forcings.jl
    
    5.9 kB
  - test_grids.jl
    
    17.3 kB
  - test_halo_regions.jl
    
    2.3 kB
  - test_models.jl
    
    6.7 kB
  - test_operators.jl
    
    5.4 kB
  - test_output_writers.jl
    
    32.7 kB
  - test_pressure_solvers.jl
    
    6.4 kB
  - test_regression.jl
    
    3.2 kB
  - test_simulations.jl
    
    1.6 kB
  - test_solvers.jl
    
    9.2 kB
  - test_surface_waves.jl
    
    609 Bytes
  - test_time_stepping.jl
    
    12.8 kB
  - test_time_stepping_bcs.jl
    
    5.9 kB
  - test_turbulence_closures.jl
    
    8.7 kB
  - test_verification.jl
    
    864 Bytes
  - test_weno_reconstruction.jl
    
    5.4 kB
- verification
  - convergence_tests
    - ConvergenceTests
      - ConvergenceTests.jl
        
        1.7 kB
      - DoublyPeriodicTaylorGreen.jl
        
        2.2 kB
      - ForcedFlowFixedSlip.jl
        
        5.6 kB
      - ForcedFlowFreeSlip.jl
        
        4.4 kB
      - OneDimensionalCosineAdvectionDiffusion.jl
        
        4.2 kB
      - OneDimensionalGaussianAdvectionDiffusion.jl
        
        7.4 kB
      - OneDimensionalUtils.jl
        
        5.0 kB
      - PointExponentialDecay.jl
        
        1.6 kB
      - TwoDimensionalDiffusion.jl
        
        2.3 kB
      - analysis.jl
        
        2.4 kB
      - file_wrangling.jl
        
        869 Bytes
    - Manifest.toml
      
      5.5 kB
    - Project.toml
      
      404 Bytes
    - README.md
      
      1.8 kB
    - analyze_forced_fixed_slip.jl
      
      2.5 kB
    - analyze_forced_free_slip.jl
      
      2.1 kB
    - analyze_taylor_green.jl
      
      1.5 kB
    - derive_forced_fixed_slip.nb
      
      60.3 kB
    - one_dimensional_advection_schemes.jl
      
      7.7 kB
    - one_dimensional_cosine_advection_diffusion.jl
      
      3.2 kB
    - one_dimensional_gaussian_advection_diffusion.jl
      
      3.5 kB
    - point_exponential_decay.jl
      
      2.3 kB
    - run_forced_fixed_slip.jl
      
      573 Bytes
    - run_forced_free_slip.jl
      
      479 Bytes
    - run_taylor_green.jl
      
      424 Bytes
    - two_dimensional_diffusion.jl
      
      2.5 kB
  - lid_driven_cavity
    - lid_driven_cavity.jl
      
      3.4 kB
    - plot_lid_driven_cavity.py
      
      8.5 kB
  - periodic_advection
    - periodic_advection.jl
      
      3.6 kB
  - stommel_gyre
    - plot_stommel_gyre_advection.py
      
      1.7 kB
    - stommel_gyre.jl
      
      827 Bytes
    - stommel_gyre_advection.jl
      
      3.9 kB
  - stratified_couette_flow
    - run_stratified_couette_flow_simulations.jl
      
      214 Bytes
    - stratified_couette_flow.jl
      
      9.9 kB
    - stratified_couette_flow_analysis.jl
      
      8.8 kB
  - thermal_bubble
    - plot_thermal_bubble_advection.py
      
      2.1 kB
    - thermal_bubble.jl
      
      2.6 kB

CliMA/Oceananigans.jl-v0.41.0.zip