Plot the predicted BLUP of the genotypes.
plot_blup( x, var = 1, which = "gen", prob = 0.05, export = FALSE, file.type = "pdf", file.name = NULL, plot_theme = theme_metan(), width = 6, height = 6, err.bar = TRUE, size.err.bar = 0.5, size.shape = 3.5, size.tex.lab = 12, height.err.bar = 0.3, x.lim = NULL, x.breaks = waiver(), col.shape = c("blue", "red"), y.lab = "Genotypes", x.lab = NULL, n.dodge = 1, check.overlap = FALSE, panel.spacing = 0.15, resolution = 300, ... )
x | The |
---|---|
var | The variable to plot. Defaults to |
which | Which plot to shown. If |
prob | The probability error for constructing confidence interval. |
export | Export (or not) the plot. Default is |
file.type | If |
file.name | The name of the file for exportation, default is
|
plot_theme | The graphical theme of the plot. Default is
|
width | The width "inch" of the plot. Default is |
height | The height "inch" of the plot. Default is |
err.bar | Logical value to indicate if an error bar is shown. Defaults
to |
size.err.bar | The size of the error bar for the plot. Default is
|
size.shape | The size of the shape (both for genotypes and
environments). Default is |
size.tex.lab | The size of the text in axis text and labels. |
height.err.bar | The height for error bar. Default is |
x.lim | The range of x-axis. Default is |
x.breaks | The breaks to be plotted in the x-axis. Default is
|
col.shape | A vector of length 2 that contains the color of shapes for
genotypes above and below of the mean, respectively. Default is
|
y.lab | The label of the y-axis in the plot. Default is
|
x.lab | The label of the x-axis in the plot. Default is |
n.dodge | The number of rows that should be used to render the Y labels. This is useful for displaying labels that would otherwise overlap. |
check.overlap | Silently remove overlapping labels, (recursively) prioritizing the first, last, and middle labels. |
panel.spacing | Defines the spacing between panels when |
resolution | The resolution of the plot. Parameter valid if
|
... | Currently not used. |
An object of class gg, ggplot
.
Tiago Olivoto tiagoolivoto@gmail.com
#>#>#>#>#> --------------------------------------------------------------------------- #> P-values for Likelihood Ratio Test of the analyzed traits #> --------------------------------------------------------------------------- #> model PH #> COMPLETE NA #> GEN 9.39e-01 #> GEN:ENV 1.09e-13 #> --------------------------------------------------------------------------- #> All variables with significant (p < 0.05) genotype-vs-environment interactionplot_blup(BLUP)plot_blup(BLUP, which = "ge")# }