Plot the eigenvalues for from singular value decomposition of BLUP interaction effects matrix.
plot_eigen( x, var = 1, export = FALSE, plot_theme = theme_metan(), file.type = "pdf", file.name = NULL, width = 6, height = 6, size.shape = 3.5, size.line = 1, size.tex.lab = 12, y.lab = "Eigenvalue", y2.lab = "Accumulated variance", x.lab = "Number of multiplicative terms", resolution = 300, ... )
x | The |
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var | The variable to plot. Defaults to |
export | Export (or not) the plot. Default is |
plot_theme | The graphical theme of the plot. Default is
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file.type | If |
file.name | The name of the file for exportation, default is
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width | The width "inch" of the plot. Default is |
height | The height "inch" of the plot. Default is |
size.shape | The size of the shape. Default is |
size.line | The size of the line. Default is |
size.tex.lab | The size of the text in axis text and labels. |
y.lab | The label of the y-axis in the plot. Default is
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y2.lab | The label of the second y-axis in the plot. Default is
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x.lab | The label of the x-axis in the plot. Default is |
resolution | The resolution of the plot. Parameter valid if
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... | Currently not used. |
An object of class gg, ggplot
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Tiago Olivoto tiagoolivoto@gmail.com
# \donttest{ library(metan) BLUP <- waasb(data_ge, resp = c(GY, HM), gen = GEN, env = ENV, rep = REP)#>#>#>#>#> --------------------------------------------------------------------------- #> P-values for Likelihood Ratio Test of the analyzed traits #> --------------------------------------------------------------------------- #> model GY HM #> COMPLETE NA NA #> GEN 1.11e-05 5.07e-03 #> GEN:ENV 2.15e-11 2.27e-15 #> --------------------------------------------------------------------------- #> All variables with significant (p < 0.05) genotype-vs-environment interactionplot_eigen(BLUP)# }