Planned intervention: On Thursday 19/09 between 05:30-06:30 (UTC), Zenodo will be unavailable because of a scheduled upgrade in our storage cluster.

There is a newer version of the record available.

Published August 28, 2020 | Version v1.0.1
Software Open

danlwarren/ENMTools: ENMTools 1.0.1

  • 1. Australian National University
  • 2. The Australian National University
  • 3. Temple University
  • 4. University of Melbourne

Description

This is the first post-CRAN update to ENMTools, which fixes a few minor issues and adds some useful new features.

Enhancements
  • Added variable importance tests via interface with the vip package
  • Added clamping for the predict functions, including plots of where clamping is happening
  • Added clamping for model construction functions, with a TRUE/FALSE switch defaulting to TRUE
  • Changed naming conventions for predict functions so that the suitability raster is in the $suitability slot, just as with modeling functions
  • Added progress bars for a lot of tests
  • Added "verbose" option for a lot of functions, defaulting to FALSE
Bug fixes
  • Added some code to fix a bug with recalibration. Basically CalibratR's call to parallel was tanking on Mac OS, and there's just a little code snippet that needed to be added to the call to make that work.
  • Fixed interactive.plot generic and moved the function to its own file to make it easier to extend
  • Temporarily suppressing some warnings coming out of leaflet that are being produced by the recent rgdal changes
  • Fixed background sampling code to resample when necessary
  • Changed enmtools.ranger demo code to actually use ranger instead of rf
  • Fixed code for calculating p values for some of the hypothesis tests, the old code was getting wrong answers when there were repeated values

Files

danlwarren/ENMTools-v1.0.1.zip

Files (11.2 MB)

Name Size Download all
md5:da8ead246567c712a3a0ed0940442625
11.2 MB Preview Download

Additional details

Related works