CGATOxford/UMI-tools-0.4.1.zip
CGATOxford-UMI-tools-5772885
.gitignore
675 Bytes
.travis.yml
393 Bytes
INSTALL.rst
10.7 kB
LICENSE
1.1 kB
MANIFEST.in
121 Bytes
QUICK_START.md
14.0 kB
README.rst
2.6 kB
ez_setup.py
12.4 kB
requirements.txt
78 Bytes
setup.cfg
41 Bytes
setup.py
3.9 kB
test_umi_tools.sh
245 Bytes
tests
chr19.bam
368.9 kB
chr19.bam.bai
36.3 kB
chr19_sep.bam
368.9 kB
chr19_sep.bam.bai
36.3 kB
chr19_tag.bam
379.6 kB
chr19_tag.bam.bai
36.3 kB
extract_quality.fastq
1.3 MB
extract_quality_py3.fastq
1.3 MB
group_adj.sam
5.8 MB
group_adj.tsv
3.5 MB
group_adj_py3.sam
5.8 MB
group_adj_py3.tsv
3.5 MB
group_cluster.sam
5.8 MB
group_cluster.tsv
3.5 MB
group_cluster_py3.sam
5.8 MB
group_cluster_py3.tsv
3.5 MB
group_dir.sam
5.8 MB
group_dir.tsv
3.5 MB
group_dir_py3.sam
5.8 MB
group_dir_py3.tsv
3.5 MB
group_dir_subset.sam
572.6 kB
group_dir_subset.tsv
336.4 kB
group_dir_subset_py3.sam
572.6 kB
group_dir_subset_py3.tsv
336.4 kB
group_dir_unmapped.sam
4.6 MB
group_dir_unmapped.tsv
851.4 kB
group_dir_unmapped_py3.sam
4.6 MB
group_dir_unmapped_py3.tsv
851.4 kB
group_tag.tsv
3.5 MB
group_uniq.sam
5.8 MB
group_uniq.tsv
3.5 MB
group_uniq_py3.sam
5.8 MB
group_uniq_py3.tsv
3.5 MB
group_unique.tsv
3.5 MB
processed_3prime.fastq
1.3 MB
processed_single.fastq
1.3 MB
single.sam
74.6 kB
single_adj.sam
61.5 kB
single_adj_py3.sam
61.6 kB
single_cluster.sam
61.0 kB
single_cluster_py3.sam
61.0 kB
single_dir.sam
61.8 kB
single_dir_2.sam
57.0 kB
single_dir_2_py3.sam
57.0 kB
single_dir_mapq.sam
0 Bytes
single_dir_py3.sam
61.8 kB
single_dir_rl.sam
61.8 kB
single_ignore.sam
45.8 kB
single_ignore.sam2
45.8 kB
single_ignore_py3.sam
45.8 kB
single_perc.sam
72.0 kB
single_perc_py3.sam
72.0 kB
single_sep.sam
61.8 kB
single_sep_py3.sam
61.8 kB
single_stats_edit_distance.tsv
163 Bytes
single_stats_nodes.tsv
28 Bytes
single_stats_per_umi.tsv
11.3 kB
single_stats_per_umi_per_position.tsv
1.7 kB
single_stats_py3_edit_distance.tsv
163 Bytes
single_stats_py3_nodes.tsv
28 Bytes
single_stats_py3_per_umi.tsv
11.3 kB
single_stats_py3_per_umi_per_position.tsv
1.7 kB
single_stats_py3_topologies.tsv
41 Bytes
single_stats_topologies.tsv
41 Bytes
single_subset.sam
33.9 kB
single_subset_py3.sam
33.9 kB
single_tag.sam
69.8 kB
single_tag_py3.sam
69.8 kB
single_unique.sam
74.6 kB
single_unique_py3.sam
74.6 kB
slim.fastq.gz
349.3 kB
test_style.py
2.1 kB
test_umi_tools.py
8.3 kB
tests.yaml
10.4 kB
unmapped.bam
922.8 kB
unmapped.bam.bai
1.5 MB
umi_tools
Utilities.py
30.6 kB
__init__.py
0 Bytes
_dedup_umi.pyx
212 Bytes
dedup.py
27.9 kB
dedup_umi.pyxbld
261 Bytes
extract.py
14.7 kB
group.py
20.6 kB
network.py
15.4 kB
pyximport
8.5 MB
umi_methods.py
14.7 kB
umi_tools.py
936 Bytes
version.py
22 Bytes