,,,Breakpoint Positions,,,,,,,,,,,,,,,,
,,In Alignment, ,In Recombinant Sequence, ,Relative to ICMV_KU308386,, , , , , , Detection Methods,,,,,,
Recombination Event Number, Number In .RDP File, Begin, End,Begin, End,Begin, End, Recombinant Sequence(s), Minor Parental Sequence(s), Major Parental Sequence(s), RDP, GENECONV, Bootscan, Maxchi, Chimaera, SiSscan,PhylPro, LARD, 3Seq
1,1~,90,384,46,265,46,315,^ICMV_Z24759,ICMV_JX915744,ICMV_KU308386,4.74E-21,3.35E-12,NS,2.69E-11,4.74E-11,NS,NS,NS,3.90E-19
1,,,,,,,,,ICMV_JF496656,ICMV_AJ575821,,,,,,,,,
1,,,,,,,,,ICMV_GQ924761,SLCMV_LC312130,,,,,,,,,
1,,,,,,,,,,SLCMV_MH891841,,,,,,,,,
1,,,,,,,,,,SLCMV_KT861469,,,,,,,,,
1,,,,,,,,,,SLCMV_KU550962,,,,,,,,,
1,,,,,,,,,,SLCMV_KP455487,,,,,,,,,
1,,,,,,,,,,SLCMV_KP455485,,,,,,,,,
1,,,,,,,,,,SLCMV_KR611580,,,,,,,,,
1,,,,,,,,,,SLCMV_KR611578,,,,,,,,,
1,,,,,,,,,,SLCMV_AJ579308,,,,,,,,,
1,,,,,,,,,,SLCMV_AJ314738,,,,,,,,,
1,,,,,,,,,,SLCMV_KF898350,,,,,,,,,
,,,,,,,,,,,,,,,,,,,
2,2~,2690,2826,2596,2714,2596,2693,^ICMV_AJ575821,Unknown (ICMV_JX915744),ICMV_AM158955,3.68E-16,2.50E-19,NS,1.49E-05,3.27E-06,1.68E-07,NS,NS,4.94E-12
2,,,,,,,,SLCMV_LC312130,Unknown(ICMV_JF496656),ICMV_KU308386,,,,,,,,,
2,,,,,,,,SLCMV_MH891841,,ICMV_AJ314740,,,,,,,,,
2,,,,,,,,SLCMV_KT861469,,ICMV_AJ575820,,,,,,,,,
2,,,,,,,,SLCMV_KU550962,,ICMV_AJ512823,,,,,,,,,
2,,,,,,,,SLCMV_KP455487,,ICMV_AY730036.2,,,,,,,,,
2,,,,,,,,SLCMV_KP455485,,,,,,,,,,,
2,,,,,,,,SLCMV_KR611580,,,,,,,,,,,
2,,,,,,,,SLCMV_KR611578,,,,,,,,,,,
2,,,,,,,,SLCMV_AJ579308,,,,,,,,,,,
2,,,,,,,,SLCMV_AJ314738,,,,,,,,,,,
2,,,,,,,,SLCMV_KF898350,,,,,,,,,,,
,,,,,,,,,,,,,,,,,,,
3,3~,1984,2654,1871,2527,1906,2561,^ICMV_JX915744,Unknown (ICMV_AY730036.2),ICMV_JF496656,2.66E-08,0.037459211,1.31E-07,3.52E-08,4.17E-09,5.98E-10,NS,NS,8.86E-13
3,,,,,,,,,Unknown(ICMV_KU308386),,,,,,,,,,
3,,,,,,,,,Unknown(ICMV_AJ314740),,,,,,,,,,
3,,,,,,,,,Unknown(ICMV_AM158955),,,,,,,,,,
3,,,,,,,,,Unknown(ICMV_AJ575820),,,,,,,,,,
3,,,,,,,,,Unknown(ICMV_AJ512823),,,,,,,,,,
3,,,,,,,,,Unknown(ICMV_Z24759),,,,,,,,,,
3,,,,,,,,,Unknown(ICMV_AJ575821),,,,,,,,,,
3,,,,,,,,,Unknown(SLCMV_LC312130),,,,,,,,,,
3,,,,,,,,,Unknown(SLCMV_MH891841),,,,,,,,,,
3,,,,,,,,,Unknown(SLCMV_KT861469),,,,,,,,,,
3,,,,,,,,,Unknown(SLCMV_KU550962),,,,,,,,,,
3,,,,,,,,,Unknown(SLCMV_KP455487),,,,,,,,,,
3,,,,,,,,,Unknown(SLCMV_KP455485),,,,,,,,,,
3,,,,,,,,,Unknown(SLCMV_KR611580),,,,,,,,,,
3,,,,,,,,,Unknown(SLCMV_KR611578),,,,,,,,,,
3,,,,,,,,,Unknown(SLCMV_AJ579308),,,,,,,,,,
3,,,,,,,,,Unknown(SLCMV_AJ314738),,,,,,,,,,
3,,,,,,,,,Unknown(SLCMV_KF898350),,,,,,,,,,
,,,,,,,,,,,,,,,,,,,
Table Key:,,,,,,,,,,,,,,,,,,,
~            = It is possible that this apparent recombination signal could have been caused by an evolutionary,,,,,,,,,,,,,,,,,,,
               process other than recombination.,,,,,,,,,,,,,,,,,,,
*            = The actual breakpoint position is undetermined (it was most likely overprinted by a subsequent ,,,,,,,,,,,,,,,,,,,
               recombination event).,,,,,,,,,,,,,,,,,,,
^            = The recombinant sequence may have been misidentified (one of the identified parents might be the recombinant),,,,,,,,,,,,,,,,,,,
Minor Parent = Parent contributing the smaller fraction of sequence.,,,,,,,,,,,,,,,,,,,
Major Parent = Parent contributing the larger fraction of sequence.,,,,,,,,,,,,,,,,,,,
Unknown      = Only one parent and a recombinant need be in the alignment for a recombination event to be detectable.,,,,,,,,,,,,,,,,,,,
               The sequence listed as unknown was used to infer the existance of a missing parental sequence.,,,,,,,,,,,,,,,,,,,
NS           = No significant P-value was recorded for this recombination event using this method.,,,,,,,,,,,,,,,,,,,