Published August 6, 2020
| Version 0.5.0
Software
Open
samplchallenges/SAMPL7: Version 0.5: Add PHIP2, physical property challenge
Creators
- 1. University of California, Irvine
- 2. @MobleyLab
- 3. Memorial Sloan Kettering Cancer Center
- 4. Chodera Lab
- 5. UC Irvine
Description
This version incorporates diverse changes since the last release, particularly incorporation of the PHIP2 protein-ligand challenge data, and release of the physical property challenge details. These changes include:
- (12/2/2019): Add PHIP2 Stage 2 inputs
- (12/5/2019): Add PHIP2 Stage 2 submission format. Submission link still to come.
- (12/7/2019): Add PHIP2 example submission package.
- (12/7/2019): Add link to bare-bones PHIP2 Stage 2 submission uploads -- open for submissions.
- (12/11/2019): Update PHIP2 stage 2 deadline to noon US Pacific time Dec. 14.
- (12/12/2019): Correct a single exoOA value (for G2) binding, per e-mail from Bruce Gibb.
- (2019-12-14): Add crystal structures of PHIP2 hits, instructions for stage 3.
- (2019-12-20): Add Isaacs' TrimerTrip reference. Add Zenodo DOI for modified cyclodextrin raw experimental data.
- (2019-12-20): Add Stage 2 submissions for PHIP2.
- (2019-12-23): Add Stage 3 submission format for PHIP2.
- (2019-12-23): Add preliminary host-guest analysis (ranked submissions only, for now) for GDCC and TrimerTrip; add preliminary first pass at CD analysis.
- (2020-01-08): Add PHIP2 Stage 3 submission upload.
- (2020-01-14): Include informal reference calculations for trimertrip, GDCC, CD.
- (2020-01-17): Add PHIP2 Stage 3 submissions.
- (2020-02-14): Add additional host-guest analysis/updates to analysis. Include reference calculations in analysis, clean up files.
- (2020-04-10): Add link to host-guest virtual workshop program/video
- (2020-06-29): Add preliminary details of the SAMPL7 physical property challenge on pK<sub>a</sub>, log P, and permeability.
- (2020-07-07): Compounds renumbered for the SAMPL7 physical property challenge on pKa, log P, and permeability.
- (2020-08-06): Add physical property submission formats, templates
Files
samplchallenges/SAMPL7-0.5.0.zip
Files
(197.8 MB)
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Additional details
Related works
- Is supplement to
- https://github.com/samplchallenges/SAMPL7/tree/0.5.0 (URL)