pdxgx/neoepiscope-0.4.1.zip
pdxgx-neoepiscope-acf4135
.gitignore
1.3 kB
.gitignore~
1.3 kB
.travis.yml
584 Bytes
LICENSE
1.1 kB
MANIFEST.in
53 Bytes
README.md
17.6 kB
docs
source
conf.py
5.2 kB
index.rst
200 Bytes
installation.rst
99 Bytes
usage.rst
19 Bytes
neoepiscope
PSSMHCpan1Sizes.pickle
4.8 kB
__init__.py
28.4 kB
__main__.py
103 Bytes
ambiguousEpitopeID.pickle
32.3 kB
availableAlleles.pickle
3.1 MB
binding_scores.py
89.2 kB
bowtie_index.py
14.8 kB
download.py
35.6 kB
epitopeID.pickle
47.8 MB
file_processing.py
35.8 kB
paths.py
1.7 kB
transcript.py
151.9 kB
transcript_expression.py
17.8 kB
version.py
62 Bytes
setup.cfg
40 Bytes
setup.py
3.5 kB
tests
Chr11.gtf
84.2 MB
Chr11.hapcut.out
950 Bytes
Chr11.ref.1.ebwt
41.7 MB
Chr11.ref.2.ebwt
16.4 MB
Chr11.ref.3.ebwt
89 Bytes
Chr11.ref.4.ebwt
32.8 MB
Chr11.ref.rev.1.ebwt
41.7 MB
Chr11.ref.rev.2.ebwt
16.4 MB
Chr14.gtf
13.5 kB
Ychrom.combined.vcf
64.4 kB
Ychrom.germline.vcf
52.1 kB
Ychrom.gtf
4.6 MB
Ychrom.hapcut.out
840 Bytes
Ychrom.mutect.vcf
79.4 kB
Ychrom.ref.1.ebwt
10.8 MB
Ychrom.ref.2.ebwt
2.9 MB
Ychrom.ref.3.ebwt
116 Bytes
Ychrom.ref.4.ebwt
5.7 MB
Ychrom.ref.rev.1.ebwt
10.8 MB
Ychrom.ref.rev.2.ebwt
2.9 MB
Ychrom.varscan.vcf
9.7 kB
chr14_index.1.ebwt
29.4 MB
chr14_index.2.ebwt
11.0 MB
chr14_index.3.ebwt
26 Bytes
chr14_index.4.ebwt
22.1 MB
chr14_index.rev.1.ebwt
29.4 MB
chr14_index.rev.2.ebwt
11.0 MB
complete_hapcut.out
351 Bytes
expected.neoepiscope.out
1.0 kB
germline.vcf
11.7 kB
phased.vcf
26.9 kB
rbp.haplotypes
584 Bytes
test.hapcut.out
216 Bytes
test.rna.bai
120 Bytes
test.rna.bam
682 Bytes
test.rna.bam.bai
120 Bytes
test.vcf
437 Bytes
test___init__.py
26.6 kB
test_output.germline
4.6 MB
test_transcript.py
48.3 kB