Preview

broadinstitute-lincs-cell-painting-da8ae6a
- .gitattributes
  
  41 Bytes
- .gitignore
  
  83 Bytes
- LICENSE_BSD3.md
  
  1.5 kB
- LICENSE_CC0.md
  
  7.1 kB
- README.md
  
  2.1 kB
- comparison
  - 0.get-cytominer-tool-differences.ipynb
    
    79.0 kB
  - 1.summarize-cytominer-tool-differences.ipynb
    
    620.8 kB
  - figures
    - 2016_04_01_a549_48hr_batch1
      - feature_select_summary.png
        
        180.3 kB
      - level_3
        
        level_3_metrics_per_feature.png
        
        187.5 kB
        
        level_3_metrics_per_plate.png
        
        663.6 kB
      - level_4a
        
        level_4a_metrics_per_feature.png
        
        153.3 kB
        
        level_4a_metrics_per_plate.png
        
        157.5 kB
      - level_4b
        
        level_4b_metrics_per_feature.png
        
        226.6 kB
        
        level_4b_metrics_per_plate.png
        
        312.0 kB
      - pycytominer_select
        
        pycytominer_select_metrics_per_feature.png
        
        189.8 kB
        
        pycytominer_select_metrics_per_plate.png
        
        230.5 kB
      - summary_metrics_full.png
        
        184.0 kB
      - summary_metrics_zoom.png
        
        168.1 kB
    - pycytominer_select
      - pycytominer_select_metrics_per_feature.png
        
        189.8 kB
      - pycytominer_select_metrics_per_plate.png
        
        230.5 kB
  - results
    - 2016_04_01_a549_48hr_batch1
      - comparison_result_4b_feature_select.tsv.gz
        
        130 Bytes
      - comparison_result_level_3_mean.tsv.gz
        
        131 Bytes
      - comparison_result_level_3_median.tsv.gz
        
        131 Bytes
      - comparison_result_level_3_sum.tsv.gz
        
        131 Bytes
      - comparison_result_level_4a_mean.tsv.gz
        
        132 Bytes
      - comparison_result_level_4a_median.tsv.gz
        
        131 Bytes
      - comparison_result_level_4a_sum.tsv.gz
        
        132 Bytes
      - comparison_result_level_4b_mean.tsv.gz
        
        131 Bytes
      - comparison_result_level_4b_median.tsv.gz
        
        131 Bytes
      - comparison_result_level_4b_sum.tsv.gz
        
        131 Bytes
      - comparison_result_metric_summary.tsv
        
        26.3 kB
      - comparison_result_pycytominer_select_mean.tsv.gz
        
        131 Bytes
      - comparison_result_pycytominer_select_median.tsv.gz
        
        131 Bytes
      - comparison_result_pycytominer_select_sum.tsv.gz
        
        131 Bytes
  - scripts
    - nbconverted
      - 0.get-cytominer-tool-differences.py
        
        16.8 kB
      - 1.summarize-cytominer-tool-differences.py
        
        8.6 kB
  - util.py
    
    3.4 kB
- consensus
  - 2016_04_01_a549_48hr_batch1
    - 2016_04_01_a549_48hr_batch1_consensus_median.csv.gz
      
      133 Bytes
    - 2016_04_01_a549_48hr_batch1_consensus_median_dmso.csv.gz
      
      133 Bytes
    - 2016_04_01_a549_48hr_batch1_consensus_modz.csv.gz
      
      133 Bytes
    - 2016_04_01_a549_48hr_batch1_consensus_modz_dmso.csv.gz
      
      133 Bytes
  - README.md
    
    1.7 kB
  - build-consensus-signatures.ipynb
    
    29.7 kB
  - scripts
    - nbconverted
      - build-consensus-signatures.py
        
        5.6 kB
- environment.yml
  
  638 Bytes
- lincs-cell-painting.Rproj
  
  205 Bytes
- metadata
  - clue_manifest
    - README.md
      
      394 Bytes
    - cell_painting_lincs_pilot_1_manifest.txt
      
      134.1 kB
    - clue_data_library.Rmd
      
      6.9 kB
    - clue_data_library.html
      
      39.7 kB
    - clue_data_library.md
      
      8.7 kB
  - moa
    - 0.merge-repurposing-compounds.ipynb
      
      57.6 kB
    - 1.create-basic-mapping.ipynb
      
      55.5 kB
    - 2.map-broad_id.ipynb
      
      40.1 kB
    - 3.align-moa.ipynb
      
      184.7 kB
    - clue
      - README.md
        
        2.2 kB
      - broad_id_map.csv
        
        821.3 kB
      - md5sum.txt
        
        528 Bytes
      - repurposing_drugs_20170327.txt
        
        353.6 kB
      - repurposing_drugs_20180516.txt
        
        497.9 kB
      - repurposing_drugs_20180907.txt
        
        498.8 kB
      - repurposing_drugs_20200324.txt
        
        530.3 kB
      - repurposing_samples_20170327.txt
        
        1.5 MB
      - repurposing_samples_20180516.txt
        
        1.7 MB
      - repurposing_samples_20180907.txt
        
        1.8 MB
      - repurposing_samples_20200324.txt
        
        2.5 MB
    - repurposing_info.tsv
      
      3.6 MB
    - repurposing_info_external_moa_map_resolved.tsv
      
      220.8 kB
    - repurposing_info_long.tsv
      
      14.6 MB
    - repurposing_simple.tsv
      
      431.4 kB
    - scripts
      - nbconverted
        
        0.merge-repurposing-compounds.py
        
        4.2 kB
        
        1.create-basic-mapping.py
        
        2.4 kB
        
        2.map-broad_id.py
        
        4.1 kB
        
        3.align-moa.py
        
        13.6 kB
  - platemaps
    - 0.extract-broad-sample-metadata.ipynb
      
      11.8 kB
    - 2016_04_01_a549_48hr_batch1
      - barcode_platemap.csv
        
        5.9 kB
      - platemap
        
        C-7161-01-LM6-001.txt
        
        33.4 kB
        
        C-7161-01-LM6-002.txt
        
        33.5 kB
        
        C-7161-01-LM6-003.txt
        
        33.5 kB
        
        C-7161-01-LM6-004.txt
        
        33.4 kB
        
        C-7161-01-LM6-005.txt
        
        33.4 kB
        
        C-7161-01-LM6-006.txt
        
        33.4 kB
        
        C-7161-01-LM6-007.txt
        
        33.5 kB
        
        C-7161-01-LM6-008.txt
        
        33.4 kB
        
        C-7161-01-LM6-009.txt
        
        33.4 kB
        
        C-7161-01-LM6-010.txt
        
        33.4 kB
        
        C-7161-01-LM6-011.txt
        
        33.4 kB
        
        C-7161-01-LM6-012.txt
        
        33.4 kB
        
        C-7161-01-LM6-013.txt
        
        33.4 kB
        
        C-7161-01-LM6-014.txt
        
        33.4 kB
        
        C-7161-01-LM6-015.txt
        
        33.5 kB
        
        C-7161-01-LM6-016.txt
        
        33.6 kB
        
        C-7161-01-LM6-017.txt
        
        33.4 kB
        
        C-7161-01-LM6-018.txt
        
        33.4 kB
        
        C-7161-01-LM6-019.txt
        
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        C-7161-01-LM6-020.txt
        
        33.4 kB
        
        C-7161-01-LM6-021.txt
        
        33.4 kB
        
        C-7161-01-LM6-022.txt
        
        33.4 kB
        
        C-7161-01-LM6-023.txt
        
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        C-7161-01-LM6-024.txt
        
        33.5 kB
        
        C-7161-01-LM6-025.txt
        
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        C-7161-01-LM6-026.txt
        
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        C-7161-01-LM6-027.txt
        
        33.4 kB
        
        C-7161-01-LM6-028.txt
        
        33.4 kB
    - broad_sample_info.tsv
      
      98.2 kB
    - scripts
      - nbconverted
        
        0.broad-sample-metadata.py
        
        1.2 kB
- profiles
  - 2016_04_01_a549_48hr_batch1
    - SQ00014812
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      - SQ00014812_augmented.csv.gz
        
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      - SQ00014812_normalized.csv.gz
        
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      - SQ00014812_normalized_dmso.csv.gz
        
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      - SQ00014812_normalized_feature_select.csv.gz
        
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      - SQ00014812_normalized_feature_select_dmso.csv.gz
        
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    - SQ00014813
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      - SQ00014813_normalized.csv.gz
        
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      - SQ00014813_normalized_dmso.csv.gz
        
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      - SQ00014813_normalized_feature_select.csv.gz
        
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      - SQ00014813_normalized_feature_select_dmso.csv.gz
        
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    - SQ00014814
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      - SQ00014814_normalized_dmso.csv.gz
        
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      - SQ00014814_normalized_feature_select.csv.gz
        
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      - SQ00014814_normalized_feature_select_dmso.csv.gz
        
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    - SQ00014815
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      - SQ00014815_normalized.csv.gz
        
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      - SQ00014815_normalized_dmso.csv.gz
        
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      - SQ00014815_normalized_feature_select.csv.gz
        
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      - SQ00014815_normalized_feature_select_dmso.csv.gz
        
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    - SQ00014816
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      - SQ00014816_normalized_dmso.csv.gz
        
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      - SQ00014816_normalized_feature_select.csv.gz
        
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      - SQ00014816_normalized_feature_select_dmso.csv.gz
        
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    - SQ00014817
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      - SQ00014817_normalized_dmso.csv.gz
        
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      - SQ00014817_normalized_feature_select.csv.gz
        
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    - SQ00014818
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      - SQ00014818_normalized_dmso.csv.gz
        
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    - SQ00014819
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      - SQ00014819_normalized_dmso.csv.gz
        
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    - SQ00014820
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    - SQ00015041
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    - SQ00015042
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    - SQ00015043
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    - SQ00015044
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    - SQ00015048
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    - SQ00015050
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broadinstitute/lincs-cell-painting-v0.1.zip