sample	geneA	chrA	posA	ortA	featureA	geneB	chrB	posB	ortB	featureB	sv_ort	readsA	readsB	matchA	matchB	repeatA	repeatB	coverageA	coverageB	ratioA	ratioB	qposA	qposB	total_readsA	total_readsB	contig	type	score	rating	medal	functional effect	frame	sv_refseqA	sv_refseqA_codon	sv_refseqA_exon	sv_refseqA_anchor_type	sv_refseqA_coding_base_number	sv_refseqA_last_coding_base_number	sv_refseqA_AA_index	sv_refseqA_contig_index	sv_refseqB	sv_refseqB_codon	sv_refseqB_exon	sv_refseqB_anchor_type	sv_refseqB_coding_base_number	sv_refseqB_last_coding_base_number	sv_refseqB_AA_index	sv_refseqB_contig_index	sv_AA	sv_desc	sv_processing_exception	sv_general_info	sv_interstitial_AA	sv_frame_index
SJBALL020016_C27.1.1	NA	chr8	130560480	-	intergenic	NA	chr8	130411930	-	intergenic	?	6	6	54	62	0.000	0.000	340	258	0.430	0.460	54	54	13	12	TGTGCAAGATGTGTGCATTGAACTCAGTCCAGGACTGAAGGGGACAGGAGGAAGCAAACTTGGAAATCATGTCTTAGAGATCAAGGAGCCAAGAGATGAGACAAGCCTGGGTTCCA	DEL	29.90	HQ	0	other																				unhandled orientation ?			
SJBALL020016_C27.1.1	CYP39A1	chr6	46561181	-	intron	PRIM2	chr6	57512797	+	3utr	>	0	4	27	103	0.160	0.000	1	138	0.010	0.400	42	42	0	11	GAAAAAGGGTTTCACTCTGTCACCAAGGCTTAGTGCAGTGACACAATTACAGCTGATTGCAGCCTTGACCTTCCCAGCTCAAGTGATCCTCCTACCTCAGCCTCCCAAGTAGTTAGGACCACAGGTGTGCACCTCATATCCAGAT	ITX	1.00	LQ	1	other	,,	NM_001278738,NM_001278739,NM_016593	,,	,,	,,	1005,549,1065		,,	,,	NM_000947,NM_000947,NM_000947	,,	,,	,,	,,	,,	,,	,,	,,	;;	geneB_CDS_mapping_exception=NM_000947:-4;geneB_breakpoint_not_mapped_to_CDS=NM_000947	geneB_transcripts=NM_000947	,,	,,
SJBALL020016_C27.1.1	NA	chrX	42704547	+	intergenic	NA	chrX	42727902	+	intergenic	?	26	3	162	95	0.000	0.000	1064	28	0.340	0.040	162	162	76	72	GTTTATTTACATCACAGTTTTTCAGGCTGTACAAGAAGCATGGCACCAGCATCTGCATCTGGTGAAGGCCTTAGATGGTTTCCACTCATGGCAGAAGGAGAAGGGGAACTGAGAAAACTACTGGAGGACAATCTTAAGTCAAAAAAATGACCAAGGAAATCCTTACAATAATCCTTCATCAGGATTTTAGTGAGTGCTGGTGGTAGACATTTGGGACATATCCCTTCTCTCAGAAAGTTTCCAATCTCAAGGGAGC	read_through	54.60	RT	0	other																				unhandled orientation ?			
SJBALL020016_C27.1.1	NA	chrX	42727998	+	intergenic	NA	chrX	42814490	+	intergenic	?	1	20	143	97	0.000	0.000	9	1020	0.010	0.180	143	143	77	108	CTCTGTTTATAATGCAGACAAACAGATCTTCAATAAGAGGTATTTCTTACAATAATCCTTCATCAGGATTTTAGTGAGTGCTGGTGGTAGACATTTGGGACATATCCCTTCTCTCAGAAAGTTTCCAATCTCAAGGGAGCAGCTACATCTTGATTTTAGTCCAGTTAGCCTGGTTTCAGACTTCTGACATACAGACAGTTCTTTAGTCTGGAAAGTACACAATCAAGGTACCAGCAGAT	read_through	51.45	RT	0	other																				unhandled orientation ?			
SJBALL020016_C27.1.1	NA	chrX	42727902	-	intergenic	PPP1R2P9	chrX	42664531	-	intron	>	5	5	151	91	0.000	0.000	236	261	0.070	0.250	159	159	72	19	AAAGAACTGTCTGTATGTCAGAAGTCTGAAACCAGGCTAACTGGACTAAAATCAAGATGTAGCTGCTCCCTTGAGATTGGAAACTTTCTGAGAGAAGGGATATGTCCCAAATGTCTACCACCAGCACTCACTAAAATCCTGATGAAGGATTATTGTAAGAAATACCTCTTATTGAAGATCTGTTTGTCTGCATTATAAACAGAGGCCTCCCTTTGAGAGTTCATCTGCAATATCACCTTCTGAAATGAG	read_through	49.70	RT	0	other																				geneB_no_transcripts			
SJBALL020016_C27.1.1	NA	chrX	42746788	+	intergenic	NA	chrX	42814490	+	intergenic	?	18	0	88	85	0.000	0.000	776	0	0.200	0.000	88	88	90	108	AGCTGTGTCTATTGCTGTGTTCCTGAGGATCATATCACTGATTCACTGTTTAAATGGAATTACTACAAGGTCCTTGGATCCTGATAGCTACATCTTGATTTTAGTCCAGTTAGCCTGGTTTCAGACTTCTGACATACAGACAGTTCTTTAGTCTGGAAAGTACACAATCAAG	read_through	38.80	RT	0	other																				unhandled orientation ?			
SJBALL020016_C27.1.1	NA	chrX	42727998	+	intergenic	NA	chrX	42746659	+	intergenic	?	6	6	98	79	0.000	0.000	288	287	0.080	0.070	98	98	77	85	CTTACAATAATCCTTCATCAGGATTTTAGTGAGTGCTGGTGGTAGACATTTGGGACATATCCCTTCTCTCAGAAAGTTTCCAATCTCAAGGGAGCAGCTTCGATGTCATTTACTGATCTTCACAGAAACTTCACTTTTCTAGCTGTGTCTATTGCTGTGTTCCTGAGGATCATATC	read_through	28.75	RT	0	other																				unhandled orientation ?			
SJBALL020016_C27.1.1	NA	chr5	157336958	+	intergenic	NA	chr5	157409256	+	intergenic	?	5	9	48	155	0.000	0.000	318	213	0.240	0.390	48	48	20	22	GCCTTGTGAAGAAGATGCCTGCTTCTCTTTTGCCTTCTGCACTGACTCCCTGGAGTCCACCATTCTCCAAAGAGCCTTGATAGAATGGAGGCTTCTCAAAAAATGAAAAGTAGAACTTCCATATGATCCAGCAATTCCACCTCTGGATATACATCCAAAAAGAAAGGAAATCAGTATATCAAGGACATATTTGCACTCCTAT	read_through	19.82	RT	0	other																				unhandled orientation ?			
SJBALL020016_C27.1.1	NA	chrX	42815497	-	intergenic	NA	chrX	42727998	-	intergenic	?	9	0	94	98	0.000	0.000	304	0	0.070	0.000	94	94	128	77	GTGAGAAGGCACCACCTGTGAGCAAGGAAAAGGATCTGCTCTAGGCACTGAATCTGCTGGTACCTTGATTGTGTACTTTCCAGACTAAAGAACTCTGCTCCCTTGAGATTGGAAACTTTCTGAGAGAAGGGATATGTCCCAAATGTCTACCACCAGCACTCACTAAAATCCTGATGAAGGATTATTGTAAG	read_through	15.20	RT	0	other																				unhandled orientation ?