#!/bin/bash
#
# This will run the ATAC-seq pipeline
#
ATAC-seq -d . --sampleSheet sampleSheet.tsv --DAG dm6

# Everything but the following can be deleted:
# Bowtie2  command.sh  deepTools_qc  filtered_bam  sampleSheet.tsv
# rm -rf ATAC-seq* cluster_logs/ CSAW/ deepTools_ATAC/ MACS2* pipeline.pdf .snakemake