Data to accompany "Influenza hemagglutinin drives viral entry via two
sequential intramembrane mechanisms" by Anna Pabis, Robert Rawle, and Peter Kasson.

Publication at doi:10.1073/pnas.1914188117

This package contains:
Topology, itp files and starting conformations used in the simulations. 
The files are organized in folders named "Model_Start-state_Parameters" where model, start state and parameters correspond to a given simulation (see Table S1 for the list of all simulations)

Abbreviations used in folder naming:

CG = coarse-grained
Docked = Docked proteoliposome 
Stalk = Initial stalk
Stalk_Exp = Initial Stalk, larger bilayer
Post_Stalk = after stalk formation with CG NH3-Gly
Pre_Pore = 10ns prior to pore opening in CG NH3-Gly simulations