Cellfinder
Installation
Usage
Training
Troubleshooting
Two dimensional cell viewer
Three dimensional viewer
Transforming cells into standard space
Organise cells into atlas regions
Cube extraction
Region image generation
Summarise cell counts from multiple brains
ROI transformation
XML file cropping
XML file rescaling
Releases
Future Plans
Contributing
Cellfinder installation in a cluster computing environment.
Cellfinder
Docs
»
Overview: module code
All modules for which code is available
cellfinder.reg.brain_processor
cellfinder.reg.reg.brain_registration
cellfinder.reg.reg.registration_params