Three dimensional viewer

3D image viewing using napari

Work in progress, for the time being, I recommend ClearVolume in ImageJ

Unlike the two dimensional cell viewer, the data must fit into RAM.

Usage

    cellfinder_view_3D -/path/to/image

Arguments

Mandatory

  • -i or --img-paths Can be the path of a nifti file, tiff file, tiff files folder or text file containing a list of paths