Supplemental results for CODEML (seqf: trxb_MOD2_MAFFT9.nex_134.nex  treef: OptimizedTreeFile.tre)


TREE #  1

Ancestral reconstruction by AAML.

(((((((((TRXB_STAAW_4gcm: 0.212055, TRXB_BACSU_7_288: 0.117734): 0.090738, TRXB_LISMO_9_290: 0.129257): 0.244293, TRXB_TREPA_6_286: 0.460709): 0.058853, Q9RSY7_DEIRA: 0.398653): 0.071207, ((Q0PBZ1_CAMJE: 0.272584, TRXB_HELPY_3_292: 0.196778): 0.408504, (Q8X236_SULSF: 0.567686, (TRXB_MYCPN_17_299: 0.184598, TRXB_MYCGE_17_299: 0.183619): 0.507124): 0.170408): 0.080754): 0.144299, ((TRXB_MYCTU_16_299: 0.048598, TRXB_MYCLE_13_296: 0.083226): 0.254996, (Q9RIS2_STRCO_9_294: 0.177244, TRXB_STRCO_5_289: 0.094417): 0.147995): 0.149308): 0.088172, (((Q8YID2_BRUME: 0.254956, Q9X5F7_ZYMMO_9_294: 0.272589): 0.099818, TRXB_RICPR_6_292: 0.274734): 0.074216, ((TRXB_BUCAP_8_299: 0.071007, TRXB_BUCAI_8_299: 0.196323): 0.271971, ((TRXB_ECOLI_7_297: 0.108331, TRXB_HAEIN_8_297: 0.175384): 0.071898, (TRXB_COXBU_8_299: 0.315107, (Q9I0M2_PSEAE_8_316: 0.174629, Q9JU23_NEIMA_6_316: 0.202913): 0.053246): 0.044103): 0.047653): 0.149347): 0.103002): 0.130013, (TRXB_CHLTR_5_294: 0.117683, TRXB_CHLPN_5_294: 0.121433): 0.237229): 0.118956, (C4LW95_ENTHI_4a5l: 0.275421, TRXB1_YEAST_3d8x_3itj: 0.233890): 0.020709);

(((((((((1, 2), 3), 23), 4), ((26, 27), (28, (24, 25)))), ((19, 20), (21, 22))), (((16, 17), 18), ((13, 14), ((9, 10), (15, (11, 12)))))), (7, 8)), (5, 6));

  29..30   30..31   31..32   32..33   33..34   34..35   35..36   36..37   37..1    37..2    36..3    35..23   34..4    33..38   38..39   39..26   39..27   38..40   40..28   40..41   41..24   41..25   32..42   42..43   43..19   43..20   42..44   44..21   44..22   31..45   45..46   46..47   47..16   47..17   46..18   45..48   48..49   49..13   49..14   48..50   50..51   51..9    51..10   50..52   52..15   52..53   53..11   53..12   30..54   54..7    54..8    29..55   55..5    55..6  

tree with node labels for Rod Page's TreeView
(((((((((1_TRXB_STAAW_4gcm, 2_TRXB_BACSU_7_288) 37 , 3_TRXB_LISMO_9_290) 36 , 23_TRXB_TREPA_6_286) 35 , 4_Q9RSY7_DEIRA) 34 , ((26_Q0PBZ1_CAMJE, 27_TRXB_HELPY_3_292) 39 , (28_Q8X236_SULSF, (24_TRXB_MYCPN_17_299, 25_TRXB_MYCGE_17_299) 41 ) 40 ) 38 ) 33 , ((19_TRXB_MYCTU_16_299, 20_TRXB_MYCLE_13_296) 43 , (21_Q9RIS2_STRCO_9_294, 22_TRXB_STRCO_5_289) 44 ) 42 ) 32 , (((16_Q8YID2_BRUME, 17_Q9X5F7_ZYMMO_9_294) 47 , 18_TRXB_RICPR_6_292) 46 , ((13_TRXB_BUCAP_8_299, 14_TRXB_BUCAI_8_299) 49 , ((9_TRXB_ECOLI_7_297, 10_TRXB_HAEIN_8_297) 51 , (15_TRXB_COXBU_8_299, (11_Q9I0M2_PSEAE_8_316, 12_Q9JU23_NEIMA_6_316) 53 ) 52 ) 50 ) 48 ) 45 ) 31 , (7_TRXB_CHLTR_5_294, 8_TRXB_CHLPN_5_294) 54 ) 30 , (5_C4LW95_ENTHI_4a5l, 6_TRXB1_YEAST_3d8x_3itj) 55 ) 29 ;

Nodes 29 to 55 are ancestral

(1) Marginal reconstruction of ancestral sequences
(eqn. 4 in Yang et al. 1995 Genetics 141:1641-1650).

Prob distribs at nodes, those with p < 0.001 not listed

Prob distribution at node 29, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.002) R(0.000) N(0.000) D(0.000) C(0.007) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.094) L(0.002) K(0.000) M(0.007) F(0.000) P(0.000) S(0.001) T(0.001) W(0.000) Y(0.000) V(0.886) 

Prob distribution at node 30, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.003) R(0.000) N(0.000) D(0.000) C(0.025) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.040) L(0.006) K(0.000) M(0.012) F(0.000) P(0.000) S(0.001) T(0.001) W(0.000) Y(0.000) V(0.911) 

Prob distribution at node 31, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.001) R(0.000) N(0.000) D(0.000) C(0.004) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.024) L(0.015) K(0.000) M(0.012) F(0.000) P(0.000) S(0.001) T(0.000) W(0.000) Y(0.000) V(0.942) 

Prob distribution at node 32, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.002) L(0.000) K(0.000) M(0.001) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.995) 

Prob distribution at node 33, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.000) L(0.000) K(0.000) M(0.000) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(1.000) 

Prob distribution at node 34, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.001) L(0.000) K(0.000) M(0.000) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.999) 

Prob distribution at node 35, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.004) L(0.000) K(0.000) M(0.000) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.996) 

Prob distribution at node 36, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.069) L(0.000) K(0.000) M(0.000) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.931) 

Prob distribution at node 37, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.006) L(0.000) K(0.000) M(0.000) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.993) 

Prob distribution at node 38, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.001) L(0.000) K(0.000) M(0.000) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.999) 

Prob distribution at node 39, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.001) L(0.000) K(0.000) M(0.000) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.999) 

Prob distribution at node 40, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.002) L(0.000) K(0.000) M(0.000) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.997) 

Prob distribution at node 41, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.001) L(0.000) K(0.000) M(0.000) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.999) 

Prob distribution at node 42, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.000) L(0.000) K(0.000) M(0.000) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.999) 

Prob distribution at node 43, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.000) L(0.000) K(0.000) M(0.000) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(1.000) 

Prob distribution at node 44, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.000) L(0.000) K(0.000) M(0.000) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(1.000) 

Prob distribution at node 45, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.054) L(0.421) K(0.000) M(0.022) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.502) 

Prob distribution at node 46, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.159) L(0.488) K(0.000) M(0.026) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.326) 

Prob distribution at node 47, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.016) L(0.946) K(0.000) M(0.010) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.027) 

Prob distribution at node 48, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.026) L(0.486) K(0.000) M(0.015) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.472) 

Prob distribution at node 49, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.002) L(0.002) K(0.000) M(0.001) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.995) 

Prob distribution at node 50, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.000) L(0.994) K(0.000) M(0.002) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.004) 

Prob distribution at node 51, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.000) L(1.000) K(0.000) M(0.000) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.000) 

Prob distribution at node 52, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.000) L(0.999) K(0.000) M(0.001) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.000) 

Prob distribution at node 53, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(0.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.000) L(1.000) K(0.000) M(0.000) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.000) 

Prob distribution at node 54, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.000) R(0.000) N(0.000) D(0.000) C(1.000) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.000) L(0.000) K(0.000) M(0.000) F(0.000) P(0.000) S(0.000) T(0.000) W(0.000) Y(0.000) V(0.000) 

Prob distribution at node 55, by site

   site  Freq   Data

      1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: A(0.001) R(0.000) N(0.000) D(0.000) C(0.004) Q(0.000) E(0.000) G(0.000) H(0.000) I(0.103) L(0.001) K(0.000) M(0.007) F(0.000) P(0.000) S(0.000) T(0.001) W(0.000) Y(0.000) V(0.881) 

Prob of best state at each node, listed by site

   site   Freq   Data: 

   1      1   VVIVVICCLLLLVVLLLIVVVVVVVVVV: V(0.886) V(0.911) V(0.942) V(0.995) V(1.000) V(0.999) V(0.996) V(0.931) V(0.993) V(0.999) V(0.999) V(0.997) V(0.999) V(0.999) V(1.000) V(1.000) V(0.502) L(0.488) L(0.946) L(0.486) V(0.995) L(0.994) L(1.000) L(0.999) L(1.000) C(1.000) V(0.881) 

Summary of changes along branches.
Check root of tree for directions of change.

Branch 1:   29..30



Branch 2:   30..31



Branch 3:   31..32



Branch 4:   32..33



Branch 5:   33..34



Branch 6:   34..35



Branch 7:   35..36



Branch 8:   36..37



Branch 9:   37..1  (TRXB_STAAW_4gcm) 



Branch 10:   37..2  (TRXB_BACSU_7_288) 



Branch 11:   36..3  (TRXB_LISMO_9_290) 

	   1 V 0.931 -> I


Branch 12:   35..23 (TRXB_TREPA_6_286) 



Branch 13:   34..4  (Q9RSY7_DEIRA) 



Branch 14:   33..38



Branch 15:   38..39



Branch 16:   39..26 (Q0PBZ1_CAMJE) 



Branch 17:   39..27 (TRXB_HELPY_3_292) 



Branch 18:   38..40



Branch 19:   40..28 (Q8X236_SULSF) 



Branch 20:   40..41



Branch 21:   41..24 (TRXB_MYCPN_17_299) 



Branch 22:   41..25 (TRXB_MYCGE_17_299) 



Branch 23:   32..42



Branch 24:   42..43



Branch 25:   43..19 (TRXB_MYCTU_16_299) 



Branch 26:   43..20 (TRXB_MYCLE_13_296) 



Branch 27:   42..44



Branch 28:   44..21 (Q9RIS2_STRCO_9_294) 



Branch 29:   44..22 (TRXB_STRCO_5_289) 



Branch 30:   31..45



Branch 31:   45..46

	   1 V 0.502 -> L 0.488


Branch 32:   46..47



Branch 33:   47..16 (Q8YID2_BRUME) 



Branch 34:   47..17 (Q9X5F7_ZYMMO_9_294) 



Branch 35:   46..18 (TRXB_RICPR_6_292) 

	   1 L 0.488 -> I


Branch 36:   45..48

	   1 V 0.502 -> L 0.486


Branch 37:   48..49

	   1 L 0.486 -> V 0.995


Branch 38:   49..13 (TRXB_BUCAP_8_299) 



Branch 39:   49..14 (TRXB_BUCAI_8_299) 



Branch 40:   48..50



Branch 41:   50..51



Branch 42:   51..9  (TRXB_ECOLI_7_297) 



Branch 43:   51..10 (TRXB_HAEIN_8_297) 



Branch 44:   50..52



Branch 45:   52..15 (TRXB_COXBU_8_299) 



Branch 46:   52..53



Branch 47:   53..11 (Q9I0M2_PSEAE_8_316) 



Branch 48:   53..12 (Q9JU23_NEIMA_6_316) 



Branch 49:   30..54

	   1 V 0.911 -> C 1.000


Branch 50:   54..7  (TRXB_CHLTR_5_294) 



Branch 51:   54..8  (TRXB_CHLPN_5_294) 



Branch 52:   29..55



Branch 53:   55..5  (C4LW95_ENTHI_4a5l) 



Branch 54:   55..6  (TRXB1_YEAST_3d8x_3itj) 

	   1 V 0.881 -> I




List of extant and reconstructed sequences

    55      1

TRXB_STAAW_4gcm   V
TRXB_BACSU_7_288   V
TRXB_LISMO_9_290   I
Q9RSY7_DEIRA      V
C4LW95_ENTHI_4a5l   V
TRXB1_YEAST_3d8x_3itj   I
TRXB_CHLTR_5_294   C
TRXB_CHLPN_5_294   C
TRXB_ECOLI_7_297   L
TRXB_HAEIN_8_297   L
Q9I0M2_PSEAE_8_316   L
Q9JU23_NEIMA_6_316   L
TRXB_BUCAP_8_299   V
TRXB_BUCAI_8_299   V
TRXB_COXBU_8_299   L
Q8YID2_BRUME      L
Q9X5F7_ZYMMO_9_294   L
TRXB_RICPR_6_292   I
TRXB_MYCTU_16_299   V
TRXB_MYCLE_13_296   V
Q9RIS2_STRCO_9_294   V
TRXB_STRCO_5_289   V
TRXB_TREPA_6_286   V
TRXB_MYCPN_17_299   V
TRXB_MYCGE_17_299   V
Q0PBZ1_CAMJE      V
TRXB_HELPY_3_292   V
Q8X236_SULSF      V
node #29          V
node #30          V
node #31          V
node #32          V
node #33          V
node #34          V
node #35          V
node #36          V
node #37          V
node #38          V
node #39          V
node #40          V
node #41          V
node #42          V
node #43          V
node #44          V
node #45          V
node #46          L
node #47          L
node #48          L
node #49          V
node #50          L
node #51          L
node #52          L
node #53          L
node #54          C
node #55          V


Overall accuracy of the 27 ancestral sequences:
  0.88554  0.91077  0.94208  0.99543  0.99969  0.99922  0.99627  0.93089  0.99343  0.99935  0.99873  0.99697  0.99896  0.99927  0.99994  0.99983  0.50221  0.48765  0.94632  0.48594  0.99547  0.99359  0.99950  0.99921  0.99976  0.99959  0.88137
for a site.

  0.88554  0.91077  0.94208  0.99543  0.99969  0.99922  0.99627  0.93089  0.99343  0.99935  0.99873  0.99697  0.99896  0.99927  0.99994  0.99983  0.50221  0.48765  0.94632  0.48594  0.99547  0.99359  0.99950  0.99921  0.99976  0.99959  0.88137
for the sequence.


Counts of changes at sites

   1  VI VI LI VL VL LV VC (7)


(2) Joint reconstruction of ancestral sequences
(eqn. 2 in Yang et al. 1995 Genetics 141:1641-1650), using the algorithm of Pupko et al. (2000 Mol Biol Evol 17:890-896),
modified to generate sub-optimal reconstructions.

Reconstruction (prob.), listed by pattern (use the observed data to find the right site).

Pattern Freq   Data:

   1       1  VVIVVICCLLLLVVLLLIVVVVVVVVVV: VVVVVVVVVVVVVVVVLLLLVLLLLCV (0.319) VVVVVVVVVVVVVVVVVVLVVLLLLCV (0.223) VVVVVVVVVVVVVVVVVILVVLLLLCV (0.070) VVVVVVVVVVVVVVVVVLLVVLLLLCV (0.050) IVVVVVVVVVVVVVVVLLLLVLLLLCI (0.016) IVVVVVVVVVVVVVVVVVLVVLLLLCI (0.012) IIVVVVVVVVVVVVVVLLLLVLLLLCI (0.006) IIIVVVVVVVVVVVVVLLLLVLLLLCI (0.005) VVVVVVVVVVVVVVVVLLLLVLLLLCI (0.003) VVVVVVVVVVVVVVVVVVLVVLLLLCI (0.002) MMMVVVVVVVVVVVVVLLLLVLLLLCM (0.001) CCVVVVVVVVVVVVVVLLLLVLLLLCC (0.001) LLLVVVVVVVVVVVVVLLLLVLLLLCL (0.001) MMMVVVVVVVVVVVVVMMLMVLLLLCM (0.001)  (total  0.710)



List of extant and reconstructed sequences

    55      1

TRXB_STAAW_4gcm   V
TRXB_BACSU_7_288   V
TRXB_LISMO_9_290   I
Q9RSY7_DEIRA      V
C4LW95_ENTHI_4a5l   V
TRXB1_YEAST_3d8x_3itj   I
TRXB_CHLTR_5_294   C
TRXB_CHLPN_5_294   C
TRXB_ECOLI_7_297   L
TRXB_HAEIN_8_297   L
Q9I0M2_PSEAE_8_316   L
Q9JU23_NEIMA_6_316   L
TRXB_BUCAP_8_299   V
TRXB_BUCAI_8_299   V
TRXB_COXBU_8_299   L
Q8YID2_BRUME      L
Q9X5F7_ZYMMO_9_294   L
TRXB_RICPR_6_292   I
TRXB_MYCTU_16_299   V
TRXB_MYCLE_13_296   V
Q9RIS2_STRCO_9_294   V
TRXB_STRCO_5_289   V
TRXB_TREPA_6_286   V
TRXB_MYCPN_17_299   V
TRXB_MYCGE_17_299   V
Q0PBZ1_CAMJE      V
TRXB_HELPY_3_292   V
Q8X236_SULSF      V
node #29          V
node #30          V
node #31          V
node #32          V
node #33          V
node #34          V
node #35          V
node #36          V
node #37          V
node #38          V
node #39          V
node #40          V
node #41          V
node #42          V
node #43          V
node #44          V
node #45          L
node #46          L
node #47          L
node #48          L
node #49          V
node #50          L
node #51          L
node #52          L
node #53          L
node #54          C
node #55          V


