     38    251

DNAK_ECOLI_3_603                VLLLDVTPLS LGIETMGGVM TTLIAKNTTI PTKHSQVFST AEDNQSAVSI HVLQGERKRA ADNKSLGQFN LDGINPAPRG MPQIEVTFDI DADGILHVSA KDKNSGKEQK ITIKASSG-L NEDEIQKMVR DAEANAEADR KFEELVQTRN QGDHLLHSTR KQVEEAG--D KLPADDKTAI ESALTALETA LKGEDK---A AIEAKMQELA QVSQKLMEIA Q--------- ---------- ---------- -
DNAK_SALTY_3_603                VLLLDVTPLS LGIETMGGVM TPLITKNTTI PTKHSQVFST AEDNQSAVTI HVLQGERKRA SDNKSLGQFN LDGINPAPRG MPQIEVTFDI DADGILHVSA KDKNSGKEQK ITIKASSG-L NEEEIQKMVR DAEANAESDR KFEELVQTRN QGDHLLHSTR KQVEEAG--D KLPADDKTAI ESALNALETA LKGEDK---A AIEAKMQELA QVSQKLMEIA Q--------- ---------- ---------- -
DNAK_HAEIN_3_602                VLLLDVTPLS LGIETMGGVM TTLIEKNTTI PTKKSQVFST AEDNQSAVTI HVLQGERKRA ADNKSLGQFN LEGINPAPRG MPQIEVTFDI DANGVINVSA KDKNTGKEQQ IRIQASSG-L SDEEIQQMVR DAEANADADR KFEEVVQARN QADGIAHATR KQIAEAG--D ALSVADKEKI EAAVAELETA AKGEDK---A EIEAKIEAVI KASEPLMQAV Q--------- ---------- ---------- -
DNAK_BUCAI_4_604                VLLLDVTPLS LGIETMGGIM TSLINKNTTI PTKHSQIFST AEDNQSAVTI HVLQGERKRS SDNKSLGQFN LDGINPAPRG TAQIEVTFDI DSDGILHVSA KDKKTGKEQK ITIKASSG-L NEEEIKKMVN DAEANSEADQ KFEELIQTRN QGDQLVHSIK KQLNENK--N SIEEESKKDI QLALNKLENA LKGEDK---S DIEKNIQNLL KISSKLTEIN Q--------- ---------- ---------- -
DNAK_BUCBP_4_604                VLLLDVTPLS LGIETMGGVM TTLISKNTTI PTKHSQIFST AEDNQTAVTI HVLQGERKRS IDNKSLGQFN LDGIQPAPRG MAQIEVTFDI DSDGILHVSA KDKNTGKEQK ITIKASSG-L NETEIKKMIL DAEQNSESDQ KFEELVKVRN QGDQISHSTK KQLKDLE--K TINVNDQKEI NEALNKLDTA LKGENK---T KIEEKIQEVL KISTKLIEKN K--------- ---------- ---------- -
DNAK_VIBCH_4_603                VLLQDVTLLF LGIETMGGVM TKFIEKNTTI PTKANQVFST AEDNQSAVTI HVLQGERKQA MYNKSLGQFN LEGINPAPRG MPQIEVIFDL DADGILHVSA KDKQTGKEQK ITIQASGG-L SDAEIEKMVQ EAEANKEADK KFEELATARN QADQMIHATR KQITEAG--E RLPADEKAKI ETAINELETA KKGEDK---A EIDAKVQALM AAAQKLMEIA Q--------- ---------- ---------- -
DNAK_COXBU_4_609                VLLLDVTPLS LGIETLGGVM TKLIEKNTTI PTKANQVFST ADDNQTAVTV HVLQGEREMA SANKSLGRFD LSDIPPAPRG VPQIEVTFDI DANGILHVSA KDKATGKEQS IVIKASSG-L SDEEVEKMVK DAEAHRDSDR KFHELVDARN QADAMIHAAE KSVKDLG--S EVSADEKSAI EKAVNELKEA MKGNDK---D AIEAKTKALT EHSSKLAERV Y--------- ---------- ---------- -
DNAK_HELPY_3_599                VLLLDVTPLS LGIETLGGVM TKVIDRGTTI PAKKSQVFST AEDNQPAVSI MVLQGERELA RDNKSLGKFD LQGIAPAPRG VPQIEVTFDI DANGILTVSA QDKNTGKSQE IKISGSSG-L SDSEIEKMVK DAELHKEEDA KKKEVIEARN HADSLAHQTQ KSLDEHK--T NLNENDANEI QNAINALKDC VKNDNA---A ELEDKTKLLA QAAQKLGEAM A--------- ---------- ---------- -
DNAK_CAMJE_4_600                VLLLDVTPLS LGIETLGGVM TKIIEKGTTI PTKKEQVFST AEDNQSAVTI NVLQGEREFS RDNKSLGNFN LEGIPPAPRG MPQIEVTFDI DANGILTVSA KDKATGKAQE IKITGSSG-L SEEEINNMVK DAELHKEEDK KRKEAVDARN AADSLAHQVE KSLSELG--E KVAAADKENI QKALDDLRET LKNQNA---E EIESKMKALS EVSHKLAENM Y--------- ---------- ---------- -
DNAK_RHIME_4_601                VLLLDVTPLS LGIETLGGVF TVLIERNTTI PTKKSQVFST ADDNQSAVTI RVSQGEREMA ADNKLLGQFD LVGIPPAPRG VPQIEVTFDI DANGIVQVSA KDKGTGKEHQ IRIQASGG-L SDAEIEKMVK DAEANAEADK KRREGVEAKN QAESLVHSSE KSLQEHG--D KVSETDRKAI EDAIAALKSR VEEPDA---E DIKAKTNTLM EVSMKLGQAI Y--------- ---------- ---------- -
DNAK_CAUCR_4_598                VLLLDVTPLT LGIDTLGGVF TPLIERNTTI PTKRSQTFST ADDNQSAVTI RVFQGERAMA QDNKMQGQFD LVGIPPAPRG VPQIEVTFDI DANGIVQVHA KDKATNKEQS IRIQANGG-L SDSDIERMVK EAEANKAADE KKKQLVEAKN QGEAILHSTE KALAEHG--D KVGAAEKTAI ETGITELKTA LEGEDV---E AIQAKTQALI QASMKLGEAM Y--------- ---------- ---------- -
DNAK_RICPR_4_598                ILLLDVTPLS LGIETLGGVF TRLIDRNTTI PSKKSQVFST ADDNQHAVTI RVFQGEREMA KDNKLLGQFN LEGIPPAPRG VPQIEVTFDI DANGIVHVSA KDKASGKEQK VTIQASGG-L SDAEIEQMVK DAEHNADEDK KRKELIETKN AADSLVYSTE KTLREYG--D KLSSEEKGTV EEALTSLKAA LESEDA---S LIKEKTGNLT AANMKIGEAM Y--------- ---------- ---------- -
DNAK_BORBU_4_599                MVLLDVTPLS LGIETLGGVM TKLIERNTTI PTKKSQVFST AADNQTSVDI KVLQGEREMA AQNRILGNFI LDGIPAAPRG VPQIEVSFDI DANGIVHVSA KDMGTGKEQK IRIESSSG-L SESEIDRMVK DAEAHAEEDK KLKENIEAKN TANSLIYQTE KSLKEYS--E KISSEDKEAI ESKIKELKES LEKEDI---S LIKSRTEELQ KASYKIAEMM Y--------- ---------- ---------- -
DNAK_TREPA_4_598                VLLLDVTPLS LGIETMGGVF TPLISRNTTI PTRKSQVFST AADGQTAVSI HVLQGERGMA NQNRTLGNFD LVGIPPAPRG VPQIEVTFDI DANGIVHVSA KDLGTGKEQH IRIESSSG-L SESEIDRMVK EAEANAESDK REREKIEARN VADSLIYQTE KTLKEAG--D GVNAADRARI DEAIAELKTV LSGDDV---A SIKAKTEILQ QASYKIAEEM Y--------- ---------- ---------- -
DNAK_LACLC_4_574                VVLLDVTPLS LGIETMGGVF TKLIDRNTTI PTSKSQVFST AADNQPAVDI HVLQGERPMA ADNKTLGRFQ LTDIPAAPRG IPQIEVTFDI DKNGIVSVKA KDLGTQKEQT IVIKSNSG-L SDEEIDKMMK DAEANADADA KRKEEVDTRN EADALVFQTE KTLKDLE--G KVEEAEVKKA EDAKEELKKA LEGEDI---D DIKAKSEALS EIAQNLAVKL Y--------- ---------- ---------- -
DNAK_STRMU_4_575                VVLLDVTPLS LGIETMGGVF TKLI-----I AIQQSQLLNH KSSQQQSVDI HVLQGERPMA ADNKTLGRFQ LTDIPAAPRG VPQIEVTFDI DKNGIVSVKA KDLGTQKEQT IVIQSNSG-L TDEEIDKMMK DAEANAEADA KRKEEVDLKN EVDQAIFTTE KTIKETE--G KGFDTERDAA QAALDDLKKA QESGNL---D DMKAKLEALN EKAQALAMKL Y--------- ---------- ---------- -
DNAK_STRPN_4_574                VVLLDVTPLS LGIETMGGVF TKLIDRNTTI PTSKSQVFST AADNQPAVDI HVLQGERPMA ADNKTLGRFQ LTDIPAAPRG IPQIEVTFDI DKNGIVSVKA KDLGTQKEQT IVIQSNSG-L TDEEIDRMMK DAEANAESDK KRKEEVDLRN EVDQAIFATE KTIKETE--G KGFDAERDAA QAALDDLKKA QEDNNL---D DMKAKLEALN EKAQGLAVKL Y--------- ---------- ---------- -
DNAK_STRPY_4_574                VVLLDVTPLS LGIETMGGVF TKLIDRNTTI PTSKSQVFST AADNQPAVDI HVLQGERPMA ADNKTLGRFQ LTDIPAAPRG IPQIEVTFDI DKNGIVSVKA KDLGTQKEQH IVIKSNDG-L SEEEIDRMMK DAEANAEADA KRKEEVDLKN EVDQAIFATE KTIKETE--G KGFDTERDAA QSALDELKAA QESGNL---D DMKAKLEALN EKAQALAVKM Y--------- ---------- ---------- -
DNAK_BACSU_3_573                VVLLDVTPLS LGIETMGGVF TKLIDRNTTI PTSKSQVFST AADNQTAVDI HVLQGERPMS ADNKTLGRFQ LTDIPPAPRG VPQIEVSFDI DKNGIVNVRA KDLGTGKEQN ITIKSSSG-L SDEEIERMVK EAEENADADA KKKEEIEVRN EADQLVFQTE KTLKDLE--G KVDEEQVKKA NDAKDALKAA IEKNEF---E EIKAKKDELQ TIVQELSMKL Y--------- ---------- ---------- -
DNAK_BACST_3_572                VVLLDVTPLS LGIETMGGVF TKLIERNTTI PTSKSQIFTT AADNQTTVDI HVLQGERPMA ADNKTLGRFQ LTGYPPAPRG VPQIEVTFDI DANGIVHVRA KDLGTNKEQS ITIKSSSG-L SEEEIQRMIK EAEENAEADR KRKEAAELRN EADQLIFTTE KTLKEVE--G KVDEAEVKKA REAKDALKAA LEKNDL---D EIRKKKEALQ EAVQQLSIKL Y--------- ---------- ---------- -
DNAK_LISMO_4_574                VVLLDVTPLS LGIETMGGVM TTLIERNTTI PTSKSQTFST AADNQPAVDI HVLQGERPMA KDNKTLGRFQ LADIPPAPRG IPQIEVSFDI DKNGIVTVRA KDLGTGKEQN IVIKSSSG-L TDEEIEKMVQ DAEANAEEDK KNKENAELRN NADQLVFTVD KTLKELE--G KVEEEEVKKA EAARDELQEA LKGEDF---D AIKEKTESLN EIVQNLSVKL Y--------- ---------- ---------- -
DNAK_MYCTU_3_582                VLLLDVTPLS LGIETKGGVM TRLIERNTTI PTKRSETFTT ADDNQPSVQI QVYQGEREIA AHNKLLGSFE LTGIPPAPRG IPQIEVTFDI DANGIVHVTA KDKGTGKENT IRIQEGSG-L SKEDIDRMIK DAEAHAEEDR KRREEADVRN QAETLVYQTE KFVKEQG--S KVPEDTLNKV DAAVAEAKAA LGGSDI---S AIKSAMEKLG QESQALGQAI Y--------- ---------- ---------- -
DNAK_MYCLE_3_583                VLLLDVTPLS LGIETKGGVM TKLIERNTTI PTKRSETFTT ADDNQPSVQI QVYQGEREIA SHNKLLGSFE LTGIPPAPRG VPQIEVTFDI DANGIVHVTA KDKGTGKENT IKIQEGSG-L SKEEIDRMVK DAEAHAEEDR KRREEADVRN QAETLVYQTE KFVKEQG--S RVPEDTLNKV EAAVAEAKTA LGGTDI---S AIKSAMEKLG QDSQALGQAI Y--------- ---------- ---------- -
DNAK_CLOPE_4_575                VLLLDVTPLT LGIETLGGVA TPLIERNTTI PARKSQILST AADNQTSVEI HVVQGERQMA ADNKTLGRFT LSGIAPAPRG IPQIEVAFDI DANGIVKVSA TDKATGKEAN ITITASTN-L SDAEIDKAVK EAEQFAEEDK KRKEAIEVKN NAEQTVYQTE KTLNELG--D KVSAEEKSEI EAKI-EVKKV KDGDDI---Q AIKKAMEDLT QAFYKVSEKL Y--------- ---------- ---------- -
DNAK_CHLTR_9_602                VLLLDVIPLS LGIETLGGVM TPLVERNTTI PTQKKQIFST AADNQPAVTI VVLQGERPMA KDNKEIGRFD LTDIPPAPRG HPQIEVTFDI DANGILHVSA KDAASGREQK IRIEASSG-L KEDEIQQMIR DAELHKEEDK QRKEASDVKN EADGMIFRAE KAVKDYH--D KIPAELVKEI EEHIEKVRQA IKDAST---T AIKAASDELS THMQKIGEAM Q--------- ---------- ---------- -
DNAK_CHLMU_9_602                VLLLDVIPLS LGIETLGGVM TPLVERNTTI PTQKKQIFST AADNQPAVTI VVLQGERPMA KDNKEIGRFD LTDIPPAPRG HPQIEVTFDI DANGILHVSA KDAASGREQK IRIEASSG-L KEEEIQQMIR DAELNKEEDK KRREASDIKN EADGMIFRAE KAIKDYQ--D KIPADLVKEI EEQIEKVRQA VKDAST---T AIKAASDELS ARMQKIGEAM Q--------- ---------- ---------- -
DNAK_CHLPN_10_603               VLLLDVIPLS LGIETLGGVM TTLVERNTTI PTQKKQIFST AADNQPAVTI VVLQGERPMA KDNKEIGRFD LTDIPPAPRG HPQIEVSFDI DANGIFHVSA KDVASGKEQK IRIEASSG-L QEDEIQRMVR DAEINKEEDK KRREASDAKN EADSMIFRAE KAIKDYK--E QIPETLVKEI EERIENVRNA LKDAPI---E KIKEVTEDLS KHMQKIGESM Q--------- ---------- ---------- -
DNAK_AQUAE_8_606                IVLVDVTPLS LGVETYGGVM TVLIPRNTPI PVRKCEIFTT AHDYQTEVEI HVLQGERPLA KDNKSLAKFY LTGIPPAPRG VPKIEVCFDI DADGILHVTA KDLGTGKEQS VRVEISSG-L TPEEIERIIK EAEEHAEEDR KKKELIEAKN QLDHLVYQLE KALKEAG--D KVPADVKSEA EKVIEEAKKT IEATEI---E QVKQVTEKVL QVSSKMGTTL Y--------- ---------- ---------- -
DNAK_PORPU_4_597                ILLLDVTPLS LGVETLGGVM TKIIPRNTTI PTKKSEVFST AVDNQPNVEI QVLQGERELT KDNKSLGTFR LDGIMPAPRG VPQIEVTFDI DANGILSVKA KEKATGKEQS ITISGAST-L PKDDVERMVK EAEENFDVDQ KRRKNIDIRN QAESLCYQSE KQVKEFE--D KIDEELKNRI TNLISELRSN LEKEEL---D SIEANSEKLQ NALMEIGKNA T--------- ---------- ---------- -
DNAK_GUITH_4_599                ILLLDVTPLS LGVETLGGVT TRIIPRNTTI PTKKSEVFST AVDNQPNVEI HVLQGEREFA KDNKSLGTFR LDGILPAPRG VPQIEVTFDI DANGILSVTA KDKGTGKEQS ITITGAST-L PSDEVERMVN EAQNSAKEDK EKRDKIDLKN QSDSLCYQSE KQLKELE--G KIDDTNKNKI SSMISELRNA INNENY---D EMRDLNSKLQ TALMDLGKSV Y--------- ---------- ---------- -
DNAK_PAVLU_4_601                ILLLDVTPLS LGVETLGGVT TKIIPRNTTV PTKKSEIFST AVDNQPNVEI HVLQGEREFA RDNKSLGTFR LDGILPAPRG IPQIEVTFDI DANGILSVTA QDKGTSKQQS ITISGAST-L PKEEVEKMVK EAEQNAAADK EKGENIRVKN EADLYCYQAE KQISELP--E ALVNENQSLI KETVEMLKEN IKKEDY---D KIKENLKKLQ EKLMEIGQKA Y--------- ---------- ---------- -
DNAK_CYACA_4_599                ILLLDVCPLS LGVETLGGVM TKMIPKNTTI PTRKTEIYST AVDNQTNVEI HVLQGERELA KDNKSLGTFR LDGIPPAPRG VPQIEVTFDI DANGILSVTA KEKTTGKQQS VTITGAST-L DKDEIQKIIK EAEINAQEDR KKKENIELKN QAETICYQAQ KQLNEFK--E KIDKNQYKRI EDLIAKLKQA ISSNEY---E EIKNLMEAIQ KETMEIGKEL Y--------- ---------- ---------- -
DNAK_THEMA_8_586                IVLVDVTPLT LGIEVKGGLF EPIIPRNTKI PVRKSKIFTT VEDGQTEVEI RVYQGERPIA RENIFLGSFK LVGIPPAPRG VPQIEVTFDI DSDGIVHVSA KDLGSGKEQS MVVTGRHK-L SEDEIKRMIE DAKRYEEQDK RLKEEIELKN RADDLAYSVE KTLKEHG--D KIPADLKSRL EDMIRELRDA INRNDI---P KVKMLFDDLQ KESMKIGEYL Y--------- ---------- ---------- -
DNAK_THEAC_4_581                IVLLDVTPVT LSVETLGGIA TPIIPANTTI PVRKSQIFTT AEDMQTTVTI HVVQGERPLA KDNVSLGMFN LTGIAPAPRG VPQIEVTFDM HSNGILNVTA VDKATGKKQG ITITASTK-L SKEEIERMKK EAEQYAEQDR KAKEQIELLN NAESLAYSVE KSLKHAG--D KVDKETKERL TNEVKDLRKA IEEKNT---E NVKTLMDKLS KDIQEVGAKM Y--------- ---------- ---------- -
DNAK_THETH_4_597                VVLLDVTPLS LGVETKGGVM TVLIPRNTTI PTRKCEIFTT AEHNQTAVEI HVLQGERPMA QDNKSLGRFR LEGIPPMPAG VPQIEVCFDI DANGILHVTA KERSTGREAS ITIQNTTT-L SEEEIQRIIE EAKRHAEEDR RRREHAELKN ALDSARVQAE RVLQERQ--G A--PEARARL EAAIGKAKEL VERDAP---P ELKAATEELL KAVEEYEKGA Q--------- ---------- ---------- -
DNAK_MYCGE_8_593                VLLLDVTPLT LSIETLGGVA TPLIKRNTTI PVSKSQIFST AQDNQESVDV VVCQGERPMS RDNKSLGRFN LGGIQPAPKG KPQIEITFSL DANGILNVKA KDLTTQKENS ITISDNGN-L SEEEIQKMIR DAEANKERDN IIRERIELRN EGEGIVNTIK EILASPD--A KFPKEEKEKL EKLTGNIDAA IKANDY---A KLKVEIENFK KWREEMAKKY N--------- ---------- ---------- -
DNAK_MYCPN_8_586                VLLLDVTPLT LSIETLGGVA TPLIKRNTTI PVSKSQIFST AQDNQESVDV VVCQGERPMA RDNKSLGRFN LGGIQPAPKG KPQIEITFSL DANGILNVKA KDLTTQKENS ITISDNGN-L SEEEIQKMIR DAEANKERDN VIRERIELRN EGESIVSTIK EILQSPE--A KFPKEEKEKL DKITGGIDAA IKANDY---T KLKAEIENFK KWREEMAKKY N--------- ---------- ---------- -
HSP71_HUMAN                     LLLLDVAPLS LGLETAGGVM TALIKRNSTI PTKQTQIFTT YSDNQPGVLI QVYEGERAMT KDNNLLGRFE LSGIPPAPRG VPQIEVTFDI DANGILNVTA TDKSTGKANK ITITNDKGRL SKEEIERMVQ EAEKYKAEDE VQRERVSAKN ALESYAFNMK SAVEDEGLKG KISEADKKKV LDKCQEVISW LDANTLAEKD EFEHKRKELE QVCNPIISGL YQGAGGPGPG GFGAQGPKGG SGSGPTIEEV D



Printing out site pattern counts


        38        214  P

DNAK_ECOLI_3_603                ---------- ----AAAAAA AAAAAAAAAA AAAAAAADDD DDDDDDDDDD DDEEEEEEEE EEEEEEEEEE FFFGGGGGGG GGHHHHHIII IIIIIIIIII IKKKKKKKKK KKKKKKKKKL LLLLLLLLLL LLLLLLMMMM MMNNNNNNNN PPPPPPQQQQ QQQQQQQQQQ RRRRRRRSSS SSSSSSSSSS TTTTTTTTTT TTTTTVVVVV VVVV
DNAK_SALTY_3_603                ---------- ----AAAAAA AAAAAAAAAA AAAASSTDDD DDDDDDDDDD DEEEEEEEEE EEEEEEEEEE FFFGGGGGGG GGHHHHHIII IIIIIIIIII IKKKKKKKKK KKKKKKKKKL LLLLLLLLLL LLLLLLMMMM MMNNNNNNNN PPPPPPQQQQ QQQQQQQQQQ RRRRRRRSSS SSSSSSSSST NPTTTTTTTT TTTTTVVVVV VVVV
DNAK_HAEIN_3_602                ---------- ----AAAAAA AAAAAAAAEE IKVVAAEADD DDDDDDDDDE NEAADDEEEE EEEEEEEEEQ FFFAGGGGGG GGGHHKNAII IIIIIIIIII VAKKKKKKKK KKKKKPQQQA AIILLLLLLL LLLVVVIMMM MMNNNNNNNS PPPPPSEEKQ QQQQQQQQQQ RRRRRRRAAS SSSSSSSSTT ATAERTTTTT TTTTTAIVVV VVVV
DNAK_BUCAI_4_604                ---------- ----AAAAAA AAKNSSSSDK LDENASNEDD DDDDDDDNSD DENNEEEEEE EEEEEEEEQE FFFGGGGGGG GKQHHHHIII IIIIIIIIII ISKKKKKKKK KKKKNKKKKL VLLILLLLLL LLLLLLIMMM TTKNNNNNNN APPPPEQSKK QQQQQQQQQQ KNQRRRRLSS SSSSSSSSTT NSTKTINTTT TTTTTILIII VVVV
DNAK_BUCBP_4_604                ---------- ----AAAAAA AQELSSSTKK LEVNSISNDD DDDDDDNKDD DTEKEEDDEE EEEEEEEENE FFFGGGGGGG GEQHHHHKII IIIIIIIIII ITKKKKKKKK KKKQKKKKKL SILILLLLLL LLLLLVIMMM IMNNNNNNQN APPPPNQTKK KKQQQQQQQQ KLQRRRRESS SSSSSSSTTT NTVKTTTTTT TTTTTILIVV IVVV
DNAK_VIBCH_4_603                ---------- ----AAAAAA AAAAAAKAEE MKAAAMEDDD DDDDEYDEEE DAATDEEEDE EEEEEEEEEE FFFAGGGGGG GGQHHAHIII IIIIIIIIIL IRKKKKKKKK KKKKKKKKQK IMLLFLLLLL LLQILLVMMM MMQNNNNNNS PLPPPPQQAE QTQQQQQQQQ RQKQRRRTAA FGNSSSSSTT NKAATTTITT TTTTTAIVAV VVVV
DNAK_COXBU_4_609                ---------- ----AAAAAA AAALAARDAE TAAVSSEDDD DDDDDADSES NEAKDDDKED EEEEEEHNEE FFFADGGGGG GGAHHAHRII IIIIIIIVVI IEEKKKKKKK KKKKKKKSKM IMLVLLLLLL LLLVLLTLMM AVADHNNNPS PPPPPSKSEE YDQQQQQQRS EKRMRRRKAS SSNSSSSTTT NKASVAETTT TTTTTHVVVV VVVV
DNAK_HELPY_3_599                ---------- ----AAAAAC GLDHAAKAEA AEEMERDNDD DDDDDDNTDQ NSLDDEEKEE EEEEESKDQE FFKAGGGGGG NKSHMKTAII IIIIIILIII INEAKKKKKK KQRAKKKESV ALLLVLLLLL LLLIVLTLMM GVNDHGNNAS PPPPPNKQQE AEHQQQQQKS QKALRRRNQA SSSSSSSPTS NKANKTDTAT TTTTTALVIV VVVV
DNAK_CAMJE_4_600                ---------- ----AAAAAT GLSLASKEED SNAMEREADD DDDDDDNEDE NEASEEEREE EEEEEAKQQE FFRAGGGGGG NGSHNKTNII IIIIIIIIII IKEAKKKKKK KKKKKKNETL ALLVILLLLL LLLLALMLMM AMANHGNNPS PPPPPAKHEN YDAQQQQQNS EKKFRRRKQS SSESSSSSTT DKAEKVETTT TTTTTVLVVV VVVV
DNAK_RHIME_4_601                ---------- ----AAAAAR AAAHAAAEDA MAEIAAETDD DDDEDDDDDV NATQDEEKKD EEEEEERPEQ FFRAGGGGGG EGSHRKQAII IIIIIIIIII IKEAEKKKKK KKRRKKKQQV VLVVLLLLLL LSLIGLTLFM GVGDNNNNPS PPPPPSNMEE YEQHQQQQQS EKKMKRRDSS SGSLSSSSTT AVAKRSSTTT TTTTTVLVVV VVVV
DNAK_CAUCR_4_598                ---------- ----AAAAGA AAAHAAKEAE IAAMAQEADD DDDEEDDDEV NSAADAEKQD DDEEQEKEEE FFKGGGGGGN GGAHRRQAII IIIIIIIIII IKAVEKKKKK KKRKKKRSQL LIVVLLLLLL QFLILLTLFM GVADNNNNPS PPPPPGQMQE YEQQQQQQQA EKEMKRRTSS TGSMHNSSTT TPATRTTTTT TTTTTALTVV VVVV
DNAK_RICPR_4_598                ---------- ----AAAAAA AHEYAAASLS TTSMEKDEDD DDDDDDDDEE NANRDDEKKD EEEEEEKEEE FFRAGGGGGG SGSYRKHAII IIIIVVIIII IKEAEKKKKK KKRKKKQKQL VLVLLILLLL LFLLLLTLFM GVANNNNNPS PPPPPSGMAE YEAQQQQQQT EKKMKRRESN SGSLSSSHST TRTGTTATST TTTTTALVIV VIVV
DNAK_BORBU_4_599                ---------- ----AAASKS SASYAAASLE QASMEAEEDD DDDNDQDEDD NSEKEEEKKA EEEEEEKEEE FFLAGGGGGG KSSYKKHMII IIIIIIIIII IKEIEKKKKM RKRKRKRKEL ILVILILLLV LLLINLTLMM AVGIHNNNPS PPAPPSEYKD YETQQQQQNS EKKMKRRSQS SSSISSSTTD KKAERTESTT TTTTTALVIV VMVV
DNAK_TREPA_4_598                ---------- ----AAAAAV SAAAAAAASE QRAMSNSADD DDDDEQDDDV NSIKEEEKKA EEEEEERDDE FFEAGGGGGG GGSYHKHEII IIIIIIIIII IGGVSKKRRL RKRRKKRHEL ILVVLILLLL LLLIKLTMFM AVGDNNGNPS PPPPPNEYQD YEVQQQQQNT EKKMRRREQS SSSTSSSTTS APAARTTTTT TTTTTALVIV VVVV
DNAK_LACLC_4_574                ---------- ----AAAAAA SAALKAADDE SKELAADADD DDDDDDDGET NEAKDDDKKA EEEEEEKEEV FFRADGGGGQ GEAFHKSKII IIIIAIIIII IKPIEKKKSL KKRVKNKTKL VLVVLLLLLV LLLKELSMFM AIGQNNNNPS PPAPPEEQED YDEQQQQQRT EKAMRRRDQA SSSTKNSPTD EKTKVTKTTT TTTTTILVVV MVVV
DNAK_STRMU_4_575                ---------- ----AAKSAA SAATKAADDD NADLAA-TDD DDSDDDNGET NEAKDEEKKS EEEEEEKGQM FLRVDGGGGQ SEQFHQSKII IIIIAIMIII IKPLEKKKQL KK-RKAKTQQ IAVGLLLLLV LLLLELLMFM AVGQN-QNPT PPAAPFEQED YDEQQQQQRT EKAMKRRATA SSSTKNNQTD DKLDVTKTI- -HTTTKILVV MVVV
DNAK_STRPN_4_574                ---------- ----AAAAAA SAATKAADDD NADLSADADD DDDDDDNGET NEAKDEEKKA EEEEEEKNQV FFRVDGGGGQ DEQFHKSKII IIIIAIMIII IKPLEKKKSL KKRRKGRTQQ IAVGLLLLLV LLLLELLMFM AIGQNNNNPT PPAPPFEQED YDEQQQQQRT EKKMRRRAAA SSSTKNSPTD DKLDVTKTTT TTTTTKIVVV MVVV
DNAK_STRPY_4_574                ---------- ----AAAAAA SAATKAADDE NADMAADTDD DDDDDDNGET NEAKEEEKKA EEEEEEKGQV FFRVDGGGGQ SEQFHKSKII IIIIAIMIII IKPLEKKKSL KKRRKARHKQ IAVGLLLLLV LLLLELLMFM AIGQNNNNPS PPAPPFEQED YDEQQQQQRT EKAMKRRSAA SDSTKNSPTD DKLDVTATTT TTTTTKIVVV MVVV
DNAK_BACSU_3_573                ---------- ----AAAAAA SEALKSAEEA QKELAADEDD DDDDEDEGQT NEEKDDDKKA EEEEEEKNNM FFKADGGGGG KEQFHKNKII IIIIAIIIII IKPFEKKKSL KKRVKERNKI VLVVLLLLLV LLLKELKMFM SVGQNNNNPS PPPPPDDQTE YEEQQQQQRT EKAMRRRDQV SSSTRSSTTD DKVKTTASTT TTTTTILVIV VVVV
DNAK_BACST_3_572                ---------- ----AAATAA SEKVAAADEA QKELAAEADD DDDDEDDGET NEAKEEEKRA EEEEEEKNRI FFRAGGGGGN KEQFHKHKII IIIYAIIIII IKPLEKKKSL KKRVKQRSKL ILVVLLLLLV LLLKALKMFM SVGQNNNNPS PPPPPDEQEQ YEEQQQQQRT EKRMRRRETV SSSTRSTTTD DKLKTTATTT TTTTTALIAV IVVV
DNAK_LISMO_4_574                ---------- ----AAAAAA SAELKAADAE NKELEKEEDD DDDDDDDGEA NESKDEEQKA EEEEEEKEEV FFNADGGGGG GEQFHKTKII IIIIAIIIII IKPFKKKKSL KKRVKNKNKL VLVVLLLLLV LLLRNLTMMM SIGQNNNNPT PPPPPEEQEE YENQQQQQRT DQKMRRRATV SSSTRSSPTD DTLKVVESTT TTTTTILTAV VVVV
DNAK_MYCTU_3_582                ---------- ----AAASAA EASQAAASAE GKEIEAEDDD DDDEDHDSTT NEKKKEEKKD DEEEEERSDQ FFRAGGGGGG GGTYQRHAII IIIIVIIIII IKEIGKKKKK KKRLAARTQL VLVVLLALLL LYLVELMKMM GIGEHNNNPS PPPPPPEQQD YDQNEQQQSF EKRIRRRAQS SSSLTGTPTQ ARVNRTATTT TTTTTEVTAV IVVV
DNAK_MYCLE_3_583                ---------- ----AAASAA EASQAAASAE GKEIESEDDD DDDEDHDSTT NEKKKEEKKD EEEEEERTEQ FFRAGGGGGG GGTYQRHAII IIIIVIIIII IREIGKKKKK KKRLAARTQL VLVVLLALLL LYLVELMKMM GVGEHNNNPS PPPPPPEQQD YDQNEQQQSF EKRIRRRAQS SSSLTGTPTQ AKVNKTTTTT TTTTTDVTAV VVVV
DNAK_CLOPE_4_575                ---------- ----AAASKV AQKLAAAQAE TEALEAEEDD DDDEEDDDES NADNDEEKKA EEEEEEKDEE FLRAGGGGNG GGQYHKKKII IIIIIIIIII IKQIDKKKRK KTRKAKKNTK VTVVLVVLLL LVLIALMLAA SIATFNNNAS PPPPPSEYQD YENAQQQQRT EKKMKRRAQF TTSTSSSTTE -PVSTTKAAT TTTTTALIIV VVVV
DNAK_CHLTR_9_602                ---------- ----AAAAHA ALAYAAKTAK SEAMEKEEDD DDDDDDSDLT NDEKEEDRKA EEEEEEKAEE FFRADGGGGG DHGFVKHAII IIVIIIIIII IKPTKKRQQA KKRVAKQKEI IMLILIVLLL ILLIALSLMM GHADHNNNPK PPPPPPDQTQ QDEQQQQQRA ERKMKRRERM SSKESSSPST EPVKRAQTTT TTITTHVISV IVVV
DNAK_CHLMU_9_602                ---------- ----AAAAQA ALAYAAKTAK SEAMEKEDDD DDDDDDSDLT NEEKEEDRKA EEEEEERAEE FFRADGGGGG DQGFVKHAII IIVIIIIIII IKPTKKRKQA KKRVAKQKEV IMLILIVLLL ILLIALSLMM GHADNNNNPK PPPPPPDQAQ QDEQQQQQRA ERKMKRRERM SSKESSSPST EPIKRAQTTT TTITTRIISV IVVV
DNAK_CHLPN_10_603               ---------- ----AAAARA AIEYAAKEKN SEEMEKETDD DDDDDDPELT NDDKEEDRKA EEEEEERAEE FFRADGGGGG DKSFVKHSII IIVIIIIIII IQPIKKKKQV KKRVVKRKEL IMFILIVLLL ILLIALTLMM GHADNNNNPQ PPPPPPEQKQ QDEQQQQQRA ERKMKRRERM SSKESSSPST ETAKRANSTT TTITTHIISV VVVV
DNAK_AQUAE_8_606                ---------- ----AAAEVT IEQAAAAEQE LEALEKPDDD DDDDEDEDVT DEKKPEEKKH EEEEEEKTET FFKLGAGGGG AGHYHKHTII VVIIAVVIII IKPIEKKKRL KKRKVKRSEI VLLVLMALLV LLVILVTYMI GVGYHNYNPT PPPPPPESQE YEQQEKQQKA EKRLKRRKQS SSCSTSTTTE EVASRLKCVP TTTTTVLIIV IIVV
DNAK_PORPU_4_597                ---------- ----AAANLN GEAFATFDSE QREAVKPEDD DEDEEDEDLD NDKKKDEREV DEEEKERETK FFRAGGGGTG KESYQKSNII IVIIIIIIVI IKELEKKKKK KKRKNERSSL CLLIIILLLL LLLINLSLMM GVARNNNNMP PPPPPDEMNE TDQQEQQQTQ EKQLRRRNQL SSSSKASPTE SKINTSSTTT TTTTTAVVIV VIVV
DNAK_GUITH_4_599                ---------- ----AAANMA GNDLAAADEE QKDVEKPTDD DDDDEDNGND NDKKSKERRV EEEQDERESK FFKSGGGGTG NESYHKSSII IVIIIIMIVI IKEYNKKEKK KKRKLDRSTI CLLIILLLLL LLLIKLNLTM GVGRSNNNLP PPPPPDSMTE YDQQEQQQTQ ENKFKRRSQL SSSSTASPTE SRLNTSNTTT TTTTTALVIV VIVV
DNAK_PAVLU_4_601                ---------- ----AAANTN GQELAAADKM QLNAARPEDD DDDDEDDEND NEKSKAEKKV EEEEEQGEKQ FFKAGGGGTS KPLYHKSKIV IVIIIIIIVI IAEYKKKEKK KQRQNEKSSI CYLLIILLLL LLLVNLLLTM GIGRNNNNLP PPPPPVKMEE YREQEQQQTQ EKKFKRREQL SSSSTASPTE EKVSTAETTT TTTTTKIIIV VIVV
DNAK_CYACA_4_599                ---------- ----AAANLA GINFAAAEEK QRKLEKPNDD DEDEEDEEQD NDANKQEKKV EEEEEQKNEK FYKAGGGGTG SKTYHKSEII IVIIIVIIII IKEYSKKKRK KKKYLEKSTI CILIMILLLL LLLINIMLMI GVTRNNNNPD PPPPPDEMKQ YEQQEQQQTQ QKRLKRRDQT SSTSTASTTE AKLKTAQTTT TTCTTELIIV IIVV
DNAK_THEMA_8_586                ---------- ----AAVEMA GRMHSAEPKE QRALQRPDDD DDDDDEDDLV DDDKEEERKE EEEKEEKNEE FFLAGGGGKG RGDYRKHYII VIIILMVIII IKPINKKRRL IKRKLKRSTI ALVIIILLLV LYVIELFKFM GVGKYNGNPS PPPPPPDMKK YERQKQQQST EEKIKRRDSS THSFSRTTSE RPLSVVDTVK TTTEVELIIL IIVV
DNAK_THEAC_4_581                ---------- ----AAATEA AQTASAAEND SRKMQKPEDD HDDEEDNDTT NEKKKEHRKE EEEEEKKKTA FFAAGGGSKG EGSYHKNKII IVIILIVIIM IKPTEKKKRK VVAKLERGTI ALLVIVLLVV LVLVQLMLAM GVANYNMNAS PPPPPDDQKE YENQQQQQMS EKRLLRRNSI TTSSTSTTTT KPLETVKTVT TTTTTDLIII KIVV
DNAK_THETH_4_597                ---------- ----AMAAAL NRARAAAPEK LRPAEQPEDD DEHDEDAGAE NEEQEEEKKE EEEKEERDEK FFRLGGGGTG RQSVHKHGII IVIILILIII IAPPERRRRR KKRRAERSQV RAL-LYALLV LLLIHLTKMI EVSRHNNNPS PPPPP-EEKQ QEAAEQQQRV EERMKARAQV STCSTTTTTE GVLATAECTT TTTTTALIAV IVVV
DNAK_MYCGE_8_593                ---------- ----AAASLA DAVPASKAKN KKKYRRKEDS DDDEDDDAEG NENAEESDKQ EEEEEERNEK FFIGGGGSNQ ADGNVKNKII IIIILILVIL IKPYKEKISL KKRKEEKSSI VILFLMILLL LCLTRFILAM AKTNNNNNQS PPPPPPEEKQ NEENQQQQRI KRNMRKRKTR TGSSKNSETD GPLETIATVT TTTTTWLIIV IVIV
DNAK_MYCPN_8_586                ---------- ----AAASIA DAAPAAKTKG KKKYRRKEDS DDDEDDDAEG NENQEESDKQ EEEEEERNDK FFIGGGGSNQ AESSVKNKII IIIILILVIL IKPYKEKVSL KKRKEEKSSI VILFLMILLL LCLTRFILAM AKTNNNNNQS PPPPPPEEKQ NEENQQQQRI KRNMRKRKTR TGSSKNSETD GPLETIATVT TTTTTWLIIV IVIV
HSP71_HUMAN                     ADEFGIKLPQ RSTVAAYGKW NKHEATKDEE EKELEKKADD DDDEEDTGDS NEEEKADIES EEEEEARNLS FFQLGGGGGG AGSFQQNGII ILIIVIFIII IKALDSKVKK NTRKKPRKTL AYLILIVLLL LYLCRLRAMM IVSEYNNNPS PPPPPSKNQE YSANQQEQRA KQEMKRRDNC SKTLTDTPTL QAAKTMSTTT STATTVVIVV VLVV



    3    1    3    1   12    1    3    1    4    2    1    2    1    1    2
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    2    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    2    1    1    1    1    1    1    1    2    1    1    1    1
    1    5    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    4    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    2    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    1    1    1    1    1    1    1    1    1    1    1    1
    1    1    1    4

AAML (in paml version 4.8, March 2014)  DNAK_2_MAFFT22.nex
Model: Empirical for branches,  (GlobalMatrixProt_Evol.dat) ns =  38  ls = 251


Frequencies..
                                    A      R      N      D      C      Q      E      G      H      I      L      K      M      F      P      S      T      W      Y      V
DNAK_ECOLI_3_603               0.11163 0.03256 0.04186 0.07442 0.00000 0.06512 0.08837 0.06047 0.02326 0.06512 0.09302 0.08372 0.02791 0.01860 0.02791 0.06047 0.06977 0.00000 0.00000 0.05581
DNAK_SALTY_3_603               0.09767 0.03256 0.04651 0.06977 0.00000 0.06512 0.09302 0.06047 0.02326 0.06512 0.09302 0.08372 0.02791 0.01860 0.03256 0.06512 0.06977 0.00000 0.00000 0.05581
DNAK_HAEIN_3_602               0.13953 0.03721 0.04651 0.06512 0.00000 0.06977 0.10233 0.06047 0.00930 0.07907 0.06047 0.07442 0.02326 0.01860 0.02791 0.05116 0.06047 0.00000 0.00000 0.07442
DNAK_BUCAI_4_604               0.05116 0.01860 0.08372 0.06512 0.00000 0.06512 0.09302 0.05581 0.01860 0.09767 0.09767 0.11163 0.01395 0.01860 0.01860 0.08837 0.06512 0.00000 0.00000 0.03721
DNAK_BUCBP_4_604               0.04186 0.01860 0.06512 0.06512 0.00000 0.06512 0.08837 0.05581 0.01860 0.09767 0.09302 0.12558 0.01860 0.01860 0.01860 0.06977 0.08837 0.00000 0.00000 0.05116
DNAK_VIBCH_4_603               0.13023 0.02326 0.04186 0.05581 0.00000 0.07907 0.10698 0.06047 0.01395 0.07907 0.07442 0.09767 0.03721 0.02791 0.02326 0.02791 0.06977 0.00000 0.00465 0.04651
DNAK_COXBU_4_609               0.11628 0.03256 0.03721 0.08372 0.00000 0.02791 0.09302 0.05116 0.02791 0.05581 0.07907 0.09767 0.02326 0.01860 0.02791 0.07907 0.06047 0.00000 0.00465 0.08372
DNAK_HELPY_3_599               0.10698 0.02326 0.06047 0.07907 0.00465 0.05581 0.08837 0.06047 0.01860 0.06512 0.09767 0.09767 0.01860 0.01395 0.02791 0.06512 0.05581 0.00000 0.00000 0.06047
DNAK_CAMJE_4_600               0.09302 0.02791 0.06047 0.06047 0.00000 0.03721 0.12093 0.06047 0.01395 0.06512 0.09302 0.10233 0.02326 0.01860 0.02791 0.06977 0.06047 0.00000 0.00465 0.06047
DNAK_RHIME_4_601               0.10233 0.04186 0.03256 0.07442 0.00000 0.05116 0.09767 0.06977 0.01395 0.06977 0.07442 0.08372 0.01860 0.01860 0.03256 0.06977 0.06047 0.00000 0.00465 0.08372
DNAK_CAUCR_4_598               0.12093 0.03256 0.03721 0.06512 0.00000 0.06977 0.08837 0.07442 0.01395 0.07442 0.07442 0.07907 0.02326 0.02326 0.03256 0.03721 0.08372 0.00000 0.00465 0.06512
DNAK_RICPR_4_598               0.09302 0.03256 0.04186 0.06977 0.00000 0.03721 0.10233 0.06977 0.01395 0.06512 0.09302 0.09302 0.01860 0.02326 0.02791 0.06977 0.07442 0.00000 0.01395 0.06047
DNAK_BORBU_4_599               0.07442 0.03256 0.03721 0.05581 0.00000 0.03721 0.12558 0.05116 0.00930 0.09767 0.07907 0.10698 0.03256 0.01395 0.02326 0.09767 0.05581 0.00000 0.01860 0.05116
DNAK_TREPA_4_598               0.10233 0.05581 0.03721 0.06512 0.00000 0.04186 0.09302 0.07442 0.01395 0.08372 0.07442 0.05581 0.01860 0.01860 0.03256 0.07442 0.06977 0.00000 0.01395 0.07442
DNAK_LACLC_4_574               0.10698 0.02791 0.03721 0.09767 0.00000 0.04186 0.10233 0.05116 0.00465 0.06977 0.08372 0.10698 0.01860 0.02326 0.03256 0.04651 0.06977 0.00000 0.00465 0.07442
DNAK_STRMU_4_575               0.10476 0.02381 0.03810 0.09048 0.00000 0.07619 0.08571 0.05714 0.00952 0.06667 0.09524 0.10000 0.02857 0.02381 0.02381 0.04286 0.06667 0.00000 0.00476 0.06190
DNAK_STRPN_4_574               0.10698 0.03721 0.04651 0.10233 0.00000 0.05581 0.08372 0.05581 0.00465 0.06512 0.08372 0.09302 0.02326 0.02791 0.03256 0.03721 0.07442 0.00000 0.00465 0.06512
DNAK_STRPY_4_574               0.11628 0.03256 0.04186 0.09302 0.00000 0.05116 0.09302 0.05581 0.00930 0.06512 0.07907 0.09302 0.02791 0.02791 0.03256 0.04186 0.06977 0.00000 0.00465 0.06512
DNAK_BACSU_3_573               0.07907 0.03256 0.04651 0.08372 0.00000 0.05116 0.11163 0.05116 0.00465 0.06977 0.07907 0.10698 0.01860 0.02791 0.03256 0.05116 0.06977 0.00000 0.00465 0.07907
DNAK_BACST_3_572               0.09767 0.05116 0.03721 0.06047 0.00000 0.05116 0.11628 0.05116 0.00930 0.06977 0.08837 0.09767 0.01395 0.02326 0.03256 0.04186 0.08372 0.00000 0.00930 0.06512
DNAK_LISMO_4_574               0.07907 0.03256 0.05581 0.07442 0.00000 0.04651 0.12093 0.05581 0.00465 0.06512 0.08837 0.09302 0.01860 0.02326 0.03721 0.04651 0.07442 0.00000 0.00465 0.07907
DNAK_MYCTU_3_582               0.09767 0.05116 0.03256 0.06512 0.00000 0.05581 0.10233 0.07907 0.01395 0.07907 0.06977 0.07442 0.01395 0.01860 0.03721 0.05116 0.07907 0.00000 0.01395 0.06512
DNAK_MYCLE_3_583               0.08837 0.04651 0.03256 0.06047 0.00000 0.05581 0.10698 0.07907 0.01395 0.06977 0.06977 0.07907 0.01395 0.01860 0.03721 0.05116 0.08837 0.00000 0.01395 0.07442
DNAK_CLOPE_4_575               0.11682 0.02804 0.04206 0.06542 0.00000 0.04673 0.10748 0.05140 0.00467 0.08411 0.07009 0.10280 0.00935 0.01869 0.02804 0.04673 0.08879 0.00000 0.01402 0.07477
DNAK_CHLTR_9_602               0.10233 0.04651 0.02326 0.07907 0.00000 0.05581 0.10233 0.05116 0.02791 0.09767 0.06512 0.08837 0.02791 0.01860 0.04651 0.04651 0.05581 0.00000 0.00465 0.06047
DNAK_CHLMU_9_602               0.10698 0.05581 0.02791 0.07907 0.00000 0.06047 0.10233 0.05116 0.00930 0.10233 0.06512 0.08837 0.02791 0.01860 0.04651 0.04651 0.05116 0.00000 0.00465 0.05581
DNAK_CHLPN_10_603              0.07907 0.05581 0.03721 0.07442 0.00000 0.05116 0.11628 0.04651 0.01395 0.10233 0.06047 0.09302 0.02791 0.02326 0.04651 0.05116 0.05116 0.00000 0.00465 0.06512
DNAK_AQUAE_8_606               0.06977 0.03256 0.01395 0.05116 0.00930 0.03721 0.13023 0.05581 0.02326 0.07907 0.08372 0.10233 0.00930 0.01395 0.05116 0.03721 0.07442 0.00000 0.02326 0.10233
DNAK_PORPU_4_597               0.05116 0.04651 0.06512 0.06512 0.00465 0.04651 0.11628 0.05116 0.00000 0.08372 0.09302 0.09302 0.01860 0.02326 0.03721 0.06512 0.06977 0.00000 0.00465 0.06512
DNAK_GUITH_4_599               0.04651 0.04186 0.06977 0.07907 0.00465 0.04186 0.08372 0.06047 0.00465 0.07442 0.09767 0.08837 0.01860 0.01860 0.03721 0.07907 0.07907 0.00000 0.01395 0.06047
DNAK_PAVLU_4_601               0.06512 0.02791 0.05581 0.05116 0.00465 0.05581 0.11628 0.05581 0.00465 0.08372 0.09302 0.10698 0.01395 0.01860 0.04186 0.05116 0.06977 0.00000 0.01860 0.06512
DNAK_CYACA_4_599               0.06047 0.02791 0.05581 0.05116 0.00930 0.06512 0.11163 0.05116 0.00465 0.10698 0.08372 0.11628 0.01860 0.01395 0.03256 0.03721 0.08372 0.00000 0.02326 0.04651
DNAK_THEMA_8_586               0.03721 0.06977 0.02326 0.08372 0.00000 0.02791 0.10698 0.06512 0.01395 0.09767 0.08372 0.09767 0.02326 0.02791 0.05116 0.04651 0.04186 0.00000 0.02326 0.07907
DNAK_THEAC_4_581               0.07907 0.03256 0.04651 0.05116 0.00000 0.04186 0.09767 0.05116 0.01395 0.07442 0.07907 0.10698 0.02791 0.01395 0.03721 0.04651 0.10233 0.00000 0.01395 0.08372
DNAK_THETH_4_597               0.11268 0.08920 0.02817 0.03286 0.00939 0.04695 0.14085 0.05634 0.02347 0.06573 0.08451 0.05164 0.01408 0.01408 0.05164 0.02817 0.07512 0.00000 0.00469 0.07042
DNAK_MYCGE_8_593               0.06512 0.04651 0.07907 0.05581 0.00465 0.03721 0.10698 0.05581 0.00000 0.09767 0.08372 0.10698 0.01395 0.02326 0.04186 0.05581 0.06047 0.00465 0.00930 0.05116
DNAK_MYCPN_8_586               0.06512 0.04651 0.06977 0.05581 0.00465 0.04186 0.10698 0.05581 0.00000 0.09767 0.07907 0.10698 0.01395 0.02326 0.04186 0.06047 0.06512 0.00465 0.00930 0.05116
HSP71_HUMAN                    0.07570 0.03586 0.04781 0.05578 0.00797 0.04382 0.09960 0.10359 0.00398 0.06375 0.08367 0.08765 0.01594 0.02390 0.04781 0.05578 0.06375 0.00398 0.01992 0.05976

Homogeneity statistic: X2 = 2.56714 G = 2.48725 

Average                        0.08917 0.03842 0.04538 0.06855 0.00171 0.05135 0.10393 0.05977 0.01195 0.07868 0.08209 0.09405 0.02061 0.02049 0.03476 0.05501 0.06977 0.00037 0.00866 0.06526
(Ambiguity characters are used to calculate freqs.)


# constant sites:     27 (10.76%)
AA distances (raw proportions of different sites)

DNAK_ECOLI_3_603
DNAK_SALTY_3_603  0.0279
DNAK_HAEIN_3_602  0.1992  0.2032
DNAK_BUCAI_4_604  0.2072  0.1952  0.2869
DNAK_BUCBP_4_604  0.2271  0.2191  0.2869  0.1833
DNAK_VIBCH_4_603  0.2191  0.2151  0.2311  0.2908  0.3187
DNAK_COXBU_4_609  0.2948  0.2749  0.2869  0.3347  0.3347  0.2869
DNAK_HELPY_3_599  0.3426  0.3426  0.3466  0.3785  0.3745  0.3586  0.3426
DNAK_CAMJE_4_600  0.3187  0.3108  0.3147  0.3466  0.3506  0.3426  0.2829  0.2590
DNAK_RHIME_4_601  0.3187  0.3227  0.2988  0.3625  0.3904  0.3466  0.2988  0.3147  0.3108
DNAK_CAUCR_4_598  0.3227  0.3227  0.3227  0.3904  0.3984  0.3347  0.3108  0.3705  0.3625  0.2351
DNAK_RICPR_4_598  0.3267  0.3267  0.3386  0.3586  0.3865  0.3506  0.3347  0.3386  0.3347  0.2390  0.2789
DNAK_BORBU_4_599  0.3625  0.3665  0.3665  0.3904  0.4064  0.3944  0.3347  0.3466  0.3187  0.2988  0.3466  0.2829
DNAK_TREPA_4_598  0.3347  0.3307  0.3347  0.3944  0.3785  0.3586  0.3307  0.3347  0.3426  0.2869  0.3108  0.3147  0.2351
DNAK_LACLC_4_574  0.3665  0.3705  0.3506  0.3825  0.3904  0.3984  0.3147  0.3904  0.3665  0.3187  0.3586  0.3426  0.3307  0.3147
DNAK_STRMU_4_575  0.4422  0.4462  0.4382  0.4701  0.4661  0.4661  0.4104  0.4582  0.4382  0.3944  0.4382  0.4263  0.4104  0.4064  0.2231
DNAK_STRPN_4_574  0.3944  0.3904  0.3745  0.4263  0.4143  0.4104  0.3506  0.4064  0.3745  0.3506  0.3904  0.3745  0.3546  0.3307  0.1434  0.1195
DNAK_STRPY_4_574  0.3865  0.3904  0.3865  0.4223  0.4183  0.4143  0.3586  0.4064  0.3825  0.3466  0.3825  0.3665  0.3386  0.3307  0.1514  0.1275  0.0637
DNAK_BACSU_3_573  0.3865  0.3904  0.3785  0.3904  0.3785  0.4064  0.3546  0.3705  0.3785  0.3267  0.3825  0.3386  0.3307  0.3147  0.1753  0.3108  0.2430  0.2430
DNAK_BACST_3_572  0.3705  0.3745  0.3665  0.3904  0.3865  0.3904  0.3546  0.3944  0.3665  0.3386  0.3625  0.3466  0.3227  0.2948  0.2072  0.2908  0.2311  0.2311  0.1633
DNAK_LISMO_4_574  0.3586  0.3586  0.3546  0.3586  0.3705  0.3745  0.3307  0.3825  0.3625  0.3347  0.3825  0.3426  0.3267  0.3307  0.1833  0.3108  0.2351  0.2550  0.2032  0.2191
DNAK_MYCTU_3_582  0.3705  0.3705  0.3625  0.4183  0.4343  0.4183  0.3546  0.4024  0.3825  0.3147  0.3625  0.3546  0.3386  0.3466  0.3307  0.4183  0.3665  0.3705  0.3745  0.3386  0.3466
DNAK_MYCLE_3_583  0.3625  0.3546  0.3546  0.4064  0.4303  0.3944  0.3307  0.3825  0.3705  0.3108  0.3586  0.3506  0.3307  0.3386  0.3307  0.4143  0.3705  0.3785  0.3705  0.3426  0.3426  0.0438
DNAK_CLOPE_4_575  0.4024  0.4024  0.4024  0.4263  0.4343  0.3984  0.3705  0.3904  0.3904  0.3347  0.3506  0.3227  0.3227  0.3187  0.3586  0.4343  0.3944  0.4024  0.3546  0.3506  0.3347  0.3625  0.3625
DNAK_CHLTR_9_602  0.3705  0.3665  0.4064  0.4183  0.3944  0.4143  0.3546  0.4024  0.3705  0.3825  0.3984  0.3586  0.3625  0.3785  0.3785  0.4622  0.3984  0.3984  0.3825  0.3825  0.3745  0.4024  0.4064  0.3865
DNAK_CHLMU_9_602  0.3665  0.3546  0.3904  0.4104  0.3904  0.3944  0.3546  0.4024  0.3705  0.3665  0.3944  0.3546  0.3705  0.3705  0.3705  0.4502  0.3865  0.3865  0.3904  0.3745  0.3705  0.3984  0.4024  0.3944  0.0478
DNAK_CHLPN_10_603  0.3825  0.3865  0.3944  0.3984  0.3904  0.3984  0.3625  0.3944  0.3665  0.3586  0.3984  0.3546  0.3307  0.3586  0.3705  0.4542  0.3904  0.3865  0.3865  0.3705  0.3466  0.4064  0.3984  0.3984  0.1394  0.1315
DNAK_AQUAE_8_606  0.4263  0.4223  0.4542  0.4622  0.4661  0.4622  0.4104  0.4303  0.4303  0.4024  0.4183  0.4024  0.3745  0.3745  0.4183  0.4701  0.4382  0.4462  0.3865  0.3825  0.4064  0.3825  0.3785  0.3944  0.4263  0.4263  0.4223
DNAK_PORPU_4_597  0.4024  0.4064  0.4143  0.4143  0.4382  0.4343  0.3944  0.3825  0.3865  0.3825  0.3984  0.3745  0.3665  0.3865  0.4024  0.4940  0.4303  0.4343  0.3865  0.3944  0.4223  0.3825  0.3785  0.4303  0.4263  0.4223  0.4183  0.4183
DNAK_GUITH_4_599  0.4143  0.4183  0.4183  0.4263  0.4382  0.4343  0.4064  0.3825  0.3825  0.3904  0.4143  0.3825  0.3785  0.3944  0.4143  0.4701  0.4143  0.4064  0.3865  0.3944  0.4024  0.4024  0.3984  0.4263  0.4382  0.4462  0.4263  0.4024  0.2311
DNAK_PAVLU_4_601  0.4263  0.4263  0.4183  0.4303  0.4303  0.4343  0.3944  0.3944  0.3944  0.4024  0.4382  0.3904  0.3944  0.4143  0.4024  0.4701  0.4183  0.4183  0.3944  0.4024  0.4024  0.4183  0.4104  0.4064  0.4422  0.4422  0.4343  0.4303  0.2789  0.2629
DNAK_CYACA_4_599  0.4303  0.4343  0.4223  0.4343  0.4303  0.4542  0.4223  0.4064  0.4104  0.4024  0.4303  0.3984  0.3904  0.4104  0.4343  0.4861  0.4542  0.4582  0.3904  0.3904  0.4303  0.4183  0.4143  0.3984  0.4263  0.4303  0.4223  0.3665  0.2908  0.3028  0.3068
DNAK_THEMA_8_586  0.4622  0.4622  0.5020  0.4781  0.4861  0.4940  0.4741  0.4781  0.4582  0.4263  0.4422  0.4024  0.3984  0.3825  0.4542  0.5020  0.4661  0.4622  0.4422  0.4223  0.4502  0.4382  0.4382  0.4263  0.4422  0.4502  0.4542  0.3745  0.4661  0.4223  0.4741  0.4303
DNAK_THEAC_4_581  0.4622  0.4502  0.4542  0.4622  0.4701  0.4861  0.4582  0.4343  0.4024  0.4223  0.4422  0.4024  0.4263  0.4303  0.4542  0.4940  0.4582  0.4582  0.3984  0.4064  0.4422  0.4422  0.4343  0.3825  0.4582  0.4622  0.4741  0.3904  0.4064  0.4104  0.4303  0.3944  0.3865
DNAK_THETH_4_597  0.4622  0.4582  0.4422  0.4741  0.4781  0.4661  0.4542  0.4502  0.4542  0.4223  0.4741  0.4382  0.4143  0.4024  0.4542  0.4821  0.4382  0.4343  0.4183  0.3825  0.4263  0.4263  0.4183  0.4223  0.4303  0.4223  0.4422  0.3785  0.4303  0.4223  0.4422  0.3865  0.4542  0.4542
DNAK_MYCGE_8_593  0.4542  0.4462  0.4303  0.4382  0.4462  0.4741  0.4622  0.4741  0.4661  0.4542  0.4542  0.4502  0.4622  0.4661  0.4263  0.4900  0.4422  0.4382  0.4303  0.4143  0.4263  0.4661  0.4701  0.4343  0.4542  0.4502  0.4582  0.4940  0.4821  0.4900  0.4701  0.4542  0.4900  0.4502  0.4582
DNAK_MYCPN_8_586  0.4542  0.4462  0.4382  0.4422  0.4422  0.4741  0.4582  0.4701  0.4661  0.4422  0.4542  0.4462  0.4582  0.4542  0.4183  0.4781  0.4303  0.4263  0.4263  0.4064  0.4223  0.4582  0.4701  0.4343  0.4502  0.4462  0.4582  0.4940  0.4741  0.4781  0.4661  0.4582  0.4900  0.4422  0.4462  0.0438
HSP71_HUMAN      0.6056  0.6016  0.6016  0.6295  0.6215  0.6335  0.5857  0.6016  0.5697  0.5697  0.5857  0.5857  0.5936  0.6056  0.6056  0.6614  0.6255  0.6255  0.5857  0.5817  0.5976  0.5697  0.5618  0.5976  0.6056  0.6016  0.5936  0.6255  0.5817  0.5936  0.6215  0.6096  0.6653  0.6295  0.6135  0.6375  0.6295


TREE #  1:  ((((((((((((1, 2), (4, 5)), 6), 3), 7), (8, 9)), (12, (10, 11))), (24, (21, ((19, 20), (15, (18, (16, 17))))))), (13, 14)), (((25, 26), 27), (28, (((36, 37), 35), ((33, 34), (32, (30, (29, 31)))))))), (22, 23)), 38);   MP score: -1
This is a rooted tree.  Please check!
lnL(ntime: 74  np: 74):  -9431.851012      +0.000000
  39..40   40..41   41..42   42..43   43..44   44..45   45..46   46..47   47..48   48..49   49..50   50..1    50..2    49..51   51..4    51..5    48..6    47..3    46..7    45..52   52..8    52..9    44..53   53..12   53..54   54..10   54..11   43..55   55..24   55..56   56..21   56..57   57..58   58..19   58..20   57..59   59..15   59..60   60..18   60..61   61..16   61..17   42..62   62..13   62..14   41..63   63..64   64..65   65..25   65..26   64..27   63..66   66..28   66..67   67..68   68..69   69..36   69..37   68..35   67..70   70..71   71..33   71..34   70..72   72..32   72..73   73..30   73..74   74..29   74..31   40..75   75..22   75..23   39..38 
 0.430705 0.128067 0.040363 0.021929 0.059380 0.046836 0.049346 0.158707 0.030969 0.080580 0.032710 0.019146 0.011557 0.141522 0.108574 0.159096 0.173535 0.131058 0.179250 0.126141 0.213737 0.174628 0.066511 0.187143 0.030222 0.135239 0.178597 0.078094 0.270913 0.197090 0.097151 0.044577 0.076057 0.080789 0.127290 0.069400 0.033703 0.131772 0.030810 0.014183 0.092811 0.027659 0.083591 0.171505 0.161853 0.042069 0.315807 0.064644 0.024103 0.029120 0.085306 0.081806 0.311914 0.065209 0.066934 0.568803 0.042970 0.004701 0.318281 0.058528 0.097339 0.340615 0.305467 0.140457 0.213675 0.092592 0.143609 0.034761 0.155472 0.242150 0.186077 0.027745 0.020015 0.110260

tree length =   9.09522

((((((((((((1: 0.019146, 2: 0.011557): 0.032710, (4: 0.108574, 5: 0.159096): 0.141522): 0.080580, 6: 0.173535): 0.030969, 3: 0.131058): 0.158707, 7: 0.179250): 0.049346, (8: 0.213737, 9: 0.174628): 0.126141): 0.046836, (12: 0.187143, (10: 0.135239, 11: 0.178597): 0.030222): 0.066511): 0.059380, (24: 0.270913, (21: 0.097151, ((19: 0.080789, 20: 0.127290): 0.076057, (15: 0.033703, (18: 0.030810, (16: 0.092811, 17: 0.027659): 0.014183): 0.131772): 0.069400): 0.044577): 0.197090): 0.078094): 0.021929, (13: 0.171505, 14: 0.161853): 0.083591): 0.040363, (((25: 0.024103, 26: 0.029120): 0.064644, 27: 0.085306): 0.315807, (28: 0.311914, (((36: 0.042970, 37: 0.004701): 0.568803, 35: 0.318281): 0.066934, ((33: 0.340615, 34: 0.305467): 0.097339, (32: 0.213675, (30: 0.143609, (29: 0.155472, 31: 0.242150): 0.034761): 0.092592): 0.140457): 0.058528): 0.065209): 0.081806): 0.042069): 0.128067, (22: 0.027745, 23: 0.020015): 0.186077): 0.430705, 38: 0.110260);

((((((((((((DNAK_ECOLI_3_603: 0.019146, DNAK_SALTY_3_603: 0.011557): 0.032710, (DNAK_BUCAI_4_604: 0.108574, DNAK_BUCBP_4_604: 0.159096): 0.141522): 0.080580, DNAK_VIBCH_4_603: 0.173535): 0.030969, DNAK_HAEIN_3_602: 0.131058): 0.158707, DNAK_COXBU_4_609: 0.179250): 0.049346, (DNAK_HELPY_3_599: 0.213737, DNAK_CAMJE_4_600: 0.174628): 0.126141): 0.046836, (DNAK_RICPR_4_598: 0.187143, (DNAK_RHIME_4_601: 0.135239, DNAK_CAUCR_4_598: 0.178597): 0.030222): 0.066511): 0.059380, (DNAK_CLOPE_4_575: 0.270913, (DNAK_LISMO_4_574: 0.097151, ((DNAK_BACSU_3_573: 0.080789, DNAK_BACST_3_572: 0.127290): 0.076057, (DNAK_LACLC_4_574: 0.033703, (DNAK_STRPY_4_574: 0.030810, (DNAK_STRMU_4_575: 0.092811, DNAK_STRPN_4_574: 0.027659): 0.014183): 0.131772): 0.069400): 0.044577): 0.197090): 0.078094): 0.021929, (DNAK_BORBU_4_599: 0.171505, DNAK_TREPA_4_598: 0.161853): 0.083591): 0.040363, (((DNAK_CHLTR_9_602: 0.024103, DNAK_CHLMU_9_602: 0.029120): 0.064644, DNAK_CHLPN_10_603: 0.085306): 0.315807, (DNAK_AQUAE_8_606: 0.311914, (((DNAK_MYCGE_8_593: 0.042970, DNAK_MYCPN_8_586: 0.004701): 0.568803, DNAK_THETH_4_597: 0.318281): 0.066934, ((DNAK_THEMA_8_586: 0.340615, DNAK_THEAC_4_581: 0.305467): 0.097339, (DNAK_CYACA_4_599: 0.213675, (DNAK_GUITH_4_599: 0.143609, (DNAK_PORPU_4_597: 0.155472, DNAK_PAVLU_4_601: 0.242150): 0.034761): 0.092592): 0.140457): 0.058528): 0.065209): 0.081806): 0.042069): 0.128067, (DNAK_MYCTU_3_582: 0.027745, DNAK_MYCLE_3_583: 0.020015): 0.186077): 0.430705, HSP71_HUMAN: 0.110260);

Time used:  0:08
