      5      1

1SRN_A                          A
RNAS1_1                         N
RNAS1_2                         A
RNAS1_M                         A
RNS1B_R                         A



Printing out site pattern counts


         5          1  P

1SRN_A                          A
RNAS1_1                         N
RNAS1_2                         A
RNAS1_M                         A
RNS1B_R                         A


AAML (in paml version 4.8, March 2014)  PancreaticRibonucleases_Aln_Tree.nex_56.nex
Model: Empirical for branches,  (MyModel_56.dat) ns =   5  ls =   1


Frequencies..
                                    A      R      N      D      C      Q      E      G      H      I      L      K      M      F      P      S      T      W      Y      V
1SRN_A                         1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
RNAS1_1                        0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
RNAS1_2                        1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
RNAS1_M                        1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
RNS1B_R                        1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000

Homogeneity statistic: X2 = 5.00000 G = 5.00402 

Average                        0.80000 0.00000 0.20000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000

# constant sites:      0 (0.00%)
AA distances (raw proportions of different sites)

1SRN_A         
RNAS1_1          1.0000
RNAS1_2          0.0000  1.0000
RNAS1_M          0.0000  1.0000  0.0000
RNS1B_R          0.0000  1.0000  0.0000  0.0000


TREE #  1:  (((2, 3), (4, 5)), 1);   MP score: 1
This is a rooted tree.  Please check!
lnL(ntime:  0  np:  0):     -9.250204      +0.000000


tree length =   0.96775

(((2: 0.162443, 3: 0.087616): 0.102522, (4: 0.095750, 5: 0.206332): 0.117698): 0.106399, 1: 0.088987);

(((RNAS1_1: 0.162443, RNAS1_2: 0.087616): 0.102522, (RNAS1_M: 0.095750, RNS1B_R: 0.206332): 0.117698): 0.106399, 1SRN_A: 0.088987);

Time used:  0:00
