      5      1

1EY2_A                          D
HGD_HUM                         D
B8YB76_B                        D
HGD_MOU                         D
Q6AYR0                          D



Printing out site pattern counts


         5          1  P

1EY2_A                          D
HGD_HUM                         D
B8YB76_B                        D
HGD_MOU                         D
Q6AYR0                          D


AAML (in paml version 4.8, March 2014)  Homogentisate_Aln_Tree.nex_190.nex
Model: Empirical for branches,  (MyModel_190.dat) ns =   5  ls =   1


Frequencies..
                                    A      R      N      D      C      Q      E      G      H      I      L      K      M      F      P      S      T      W      Y      V
1EY2_A                         0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
HGD_HUM                        0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
B8YB76_B                       0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
HGD_MOU                        0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
Q6AYR0                         0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000

Homogeneity statistic: X2 = 0.00000 G = 0.00000 

Average                        0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000

# constant sites:      1 (100.00%)
AA distances (raw proportions of different sites)

1EY2_A         
HGD_HUM          0.0000
B8YB76_B         0.0000  0.0000
HGD_MOU          0.0000  0.0000  0.0000
Q6AYR0           0.0000  0.0000  0.0000  0.0000


TREE #  1:  ((2, (3, (4, 5))), 1);   MP score: 0
This is a rooted tree.  Please check!
lnL(ntime:  0  np:  0):     -3.683527      +0.000000


tree length =   0.13339

((2: 0.002246, (3: 0.029948, (4: 0.015790, 5: 0.027504): 0.035239): 0.022660): 0.000000, 1: 0.000000);

((HGD_HUM: 0.002246, (B8YB76_B: 0.029948, (HGD_MOU: 0.015790, Q6AYR0: 0.027504): 0.035239): 0.022660): 0.000000, 1EY2_A: 0.000000);

Time used:  0:00
