      5      1

1SZ2_A                          N
GLK_ECO                         N
I0ABJ0                          N
C9XXD4                          Q
GLK_YER                         Q



Printing out site pattern counts


         5          1  P

1SZ2_A                          N
GLK_ECO                         N
I0ABJ0                          N
C9XXD4                          Q
GLK_YER                         Q


AAML (in paml version 4.8, March 2014)  Glucokinases_Aln_Tree.nex_301.nex
Model: Empirical for branches,  (MyModel_301.dat) ns =   5  ls =   1


Frequencies..
                                    A      R      N      D      C      Q      E      G      H      I      L      K      M      F      P      S      T      W      Y      V
1SZ2_A                         0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
GLK_ECO                        0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
I0ABJ0                         0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
C9XXD4                         0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
GLK_YER                        0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000

Homogeneity statistic: X2 = 5.00000 G = 6.73012 

Average                        0.00000 0.00000 0.60000 0.00000 0.00000 0.40000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000

# constant sites:      0 (0.00%)
AA distances (raw proportions of different sites)

1SZ2_A         
GLK_ECO          0.0000
I0ABJ0           0.0000  0.0000
C9XXD4           1.0000  1.0000  1.0000
GLK_YER          1.0000  1.0000  1.0000  0.0000


TREE #  1:  ((2, (3, (4, 5))), 1);   MP score: 1
This is a rooted tree.  Please check!
lnL(ntime:  0  np:  0):    -10.137587      +0.000000


tree length =   0.36688

((2: 0.000000, (3: 0.043948, (4: 0.062773, 5: 0.190296): 0.042896): 0.026964): 0.000000, 1: 0.000000);

((GLK_ECO: 0.000000, (I0ABJ0: 0.043948, (C9XXD4: 0.062773, GLK_YER: 0.190296): 0.042896): 0.026964): 0.000000, 1SZ2_A: 0.000000);

Time used:  0:00
