      5      1

1Z10_A                          I
CP2A6_H                         I
Q307K8                          I
Q8SQ68                          I
CP2A5_M                         I



Printing out site pattern counts


         5          1  P

1Z10_A                          I
CP2A6_H                         I
Q307K8                          I
Q8SQ68                          I
CP2A5_M                         I


AAML (in paml version 4.8, March 2014)  CytochromeP450_Aln_Tree.nex_153.nex
Model: Empirical for branches,  (MyModel_153.dat) ns =   5  ls =   1


Frequencies..
                                    A      R      N      D      C      Q      E      G      H      I      L      K      M      F      P      S      T      W      Y      V
1Z10_A                         0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
CP2A6_H                        0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
Q307K8                         0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
Q8SQ68                         0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000
CP2A5_M                        0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000

Homogeneity statistic: X2 = 0.00000 G = 0.00000 

Average                        0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000 0.00000

# constant sites:      1 (100.00%)
AA distances (raw proportions of different sites)

1Z10_A         
CP2A6_H          0.0000
Q307K8           0.0000  0.0000
Q8SQ68           0.0000  0.0000  0.0000
CP2A5_M          0.0000  0.0000  0.0000  0.0000


TREE #  1:  ((2, ((4, 5), 3)), 1);   MP score: 0
This is a rooted tree.  Please check!
lnL(ntime:  0  np:  0):     -2.128939      +0.000000


tree length =   0.23328

((2: 0.000000, ((4: 0.038538, 5: 0.065489): 0.021289, 3: 0.024340): 0.081534): 0.000000, 1: 0.002092);

((CP2A6_H: 0.000000, ((Q8SQ68: 0.038538, CP2A5_M: 0.065489): 0.021289, Q307K8: 0.024340): 0.081534): 0.000000, 1Z10_A: 0.002092);

Time used:  0:00
