taoliu/MACS-v2.2.5.zip
taoliu-MACS-7276a8d
.github
ISSUE_TEMPLATE
bug_report.md
702 Bytes
feature_request.md
616 Bytes
general_question.md
492 Bytes
.gitignore
344 Bytes
.travis.yml
1.8 kB
ChangeLog
77.0 kB
DOCKER
Dockerfile
374 Bytes
Dockerfile-slim
601 Bytes
README.md
1.9 kB
INSTALL.md
5.6 kB
LICENSE
1.6 kB
MACS2
Constants.py
843 Bytes
IO
BedGraph.c
1.2 MB
BedGraph.pyx
43.7 kB
BedGraphIO.c
293.6 kB
BedGraphIO.pyx
4.8 kB
CallPeakUnit.c
1.6 MB
CallPeakUnit.pyx
81.8 kB
CallPeakUnitPrecompiled.c
1.6 MB
FixWidthTrack.c
1.3 MB
FixWidthTrack.pyx
37.9 kB
PairedEndTrack.c
966.6 kB
PairedEndTrack.pyx
22.3 kB
Parser.c
1.6 MB
Parser.pyx
44.3 kB
PeakIO.c
1.5 MB
PeakIO.pyx
51.1 kB
ScoreTrack.c
1.9 MB
ScoreTrack.pyx
71.2 kB
__init__.py
0 Bytes
OptValidator.py
28.5 kB
OutputWriter.py
10.8 kB
PeakDetect.c
441.5 kB
PeakDetect.pyx
23.1 kB
PeakModel.c
954.1 kB
PeakModel.pyx
25.2 kB
Pileup.c
841.5 kB
Pileup.pyx
31.9 kB
Prob.c
629.3 kB
Prob.pyx
23.9 kB
Signal.c
604.2 kB
Signal.pyx
13.7 kB
Statistics.c
536.3 kB
Statistics.pyx
7.4 kB
__init__.py
24 Bytes
bdgbroadcall_cmd.py
2.1 kB
bdgcmp_cmd.py
3.7 kB
bdgdiff_cmd.py
4.3 kB
bdgopt_cmd.py
2.5 kB
bdgpeakcall_cmd.py
2.7 kB
cPosValCalculation.c
13.9 kB
cPosValCalculation.h
1.8 kB
cPosValCalculation.pxd
1.2 kB
callpeak_cmd.py
19.5 kB
cmbreps_cmd.py
1.9 kB
diffpeak_cmd.py
9.7 kB
filterdup_cmd.py
4.6 kB
khash.h
21.0 kB
khash.pxd
3.2 kB
pileup_cmd.py
4.0 kB
predictd_cmd.py
3.2 kB
randsample_cmd.py
3.9 kB
refinepeak_cmd.py
6.8 kB
MANIFEST.in
223 Bytes
README.md
23.4 kB
_config.yml
25 Bytes
bin
macs2
67.5 kB
pyproject.toml
76 Bytes
requirements.txt
83 Bytes
setup.py
4.2 kB
test
CTCF_12878_5M.bed.gz
31.8 MB
CTCF_PE_CTRL_chr22_50k.bam
11.8 MB
CTCF_PE_CTRL_chr22_50k.bedpe.gz
364.1 kB
CTCF_PE_ChIP_chr22_50k.bam
9.5 MB
CTCF_PE_ChIP_chr22_50k.bedpe.gz
304.7 kB
CTCF_SE_CTRL_chr22_50k.bed.gz
388.1 kB
CTCF_SE_ChIP_chr22_50k.bed.gz
332.7 kB
Input_12878_5M.bed.gz
35.2 MB
cmdlinetest
11.5 kB
contigs50k.bed.gz
697.2 kB
hg19.len
2.0 kB
prockreport
634 Bytes
pyprofile
704 Bytes
pyprofile_stat
510 Bytes
standard_results_50kcontigs
run_callpeak_50kcontigs_peaks.narrowPeak
0 Bytes
run_callpeak_50kcontigs_summits.bed
0 Bytes
run_filterdup_result.bed
4.9 MB
run_pileup_ChIP.bed.bdg
10.4 MB
standard_results_bdgbroadcall
run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12
851.5 kB
standard_results_bdgcmp
run_bdgcmp_FE.bdg
6.2 MB
run_bdgcmp_ppois.bdg
6.2 MB
standard_results_bdgdiff
common.bed
89 Bytes
cond1.bed
30.0 kB
cond2.bed
90 Bytes
run_bdgdiff_prefix_c3.0_common.bed
89 Bytes
run_bdgdiff_prefix_c3.0_cond1.bed
40.4 kB
run_bdgdiff_prefix_c3.0_cond2.bed
90 Bytes
standard_results_bdgpeakcall
run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak
795.2 kB
standard_results_callpeak_broad
run_callpeak_broad_control_lambda.bdg
6.0 MB
run_callpeak_broad_peaks.broadPeak
61.4 kB
run_callpeak_broad_peaks.gappedPeak
85.2 kB
run_callpeak_broad_treat_pileup.bdg
3.0 MB
standard_results_callpeak_narrow
run_callpeak_narrow0_control_lambda.bdg
6.0 MB
run_callpeak_narrow0_peaks.narrowPeak
64.8 kB
run_callpeak_narrow0_summits.bed
45.2 kB
run_callpeak_narrow0_treat_pileup.bdg
3.0 MB
run_callpeak_narrow1_control_lambda.bdg
6.0 MB
run_callpeak_narrow1_peaks.narrowPeak
65.3 kB
run_callpeak_narrow1_summits.bed
45.5 kB
run_callpeak_narrow1_treat_pileup.bdg
3.0 MB
run_callpeak_narrow2_control_lambda.bdg
6.6 MB
run_callpeak_narrow2_peaks.narrowPeak
67.7 kB
run_callpeak_narrow2_summits.bed
47.6 kB
run_callpeak_narrow2_treat_pileup.bdg
2.9 MB
run_callpeak_narrow3_control_lambda.bdg
6.6 MB
run_callpeak_narrow3_peaks.narrowPeak
67.1 kB
run_callpeak_narrow3_summits.bed
47.4 kB
run_callpeak_narrow3_treat_pileup.bdg
2.9 MB
run_callpeak_narrow4_control_lambda.bdg
25 Bytes
run_callpeak_narrow4_peaks.narrowPeak
128.7 kB
run_callpeak_narrow4_summits.bed
91.5 kB
run_callpeak_narrow4_treat_pileup.bdg
2.9 MB
run_callpeak_narrow5_control_lambda.bdg
6.0 MB
run_callpeak_narrow5_peaks.narrowPeak
64.1 kB
run_callpeak_narrow5_summits.bed
44.7 kB
run_callpeak_narrow5_treat_pileup.bdg
3.0 MB
standard_results_callpeak_narrow_revert
run_callpeak_narrow_revert_control_lambda.bdg
3.9 MB
run_callpeak_narrow_revert_peaks.narrowPeak
0 Bytes
run_callpeak_narrow_revert_summits.bed
0 Bytes
run_callpeak_narrow_revert_treat_pileup.bdg
3.2 MB
standard_results_callpeak_pe_broad
run_callpeak_bampe_broad_control_lambda.bdg
10.5 MB
run_callpeak_bampe_broad_peaks.broadPeak
63.4 kB
run_callpeak_bampe_broad_peaks.gappedPeak
86.0 kB
run_callpeak_bampe_broad_treat_pileup.bdg
3.0 MB
run_callpeak_bedpe_broad_control_lambda.bdg
10.5 MB
run_callpeak_bedpe_broad_peaks.broadPeak
63.4 kB
run_callpeak_bedpe_broad_peaks.gappedPeak
86.0 kB
run_callpeak_bedpe_broad_treat_pileup.bdg
3.0 MB
standard_results_callpeak_pe_narrow
run_callpeak_bampe_narrow_control_lambda.bdg
10.5 MB
run_callpeak_bampe_narrow_peaks.narrowPeak
68.8 kB
run_callpeak_bampe_narrow_summits.bed
49.0 kB
run_callpeak_bampe_narrow_treat_pileup.bdg
3.0 MB
run_callpeak_bedpe_narrow_control_lambda.bdg
10.5 MB
run_callpeak_bedpe_narrow_peaks.narrowPeak
68.8 kB
run_callpeak_bedpe_narrow_summits.bed
49.0 kB
run_callpeak_bedpe_narrow_treat_pileup.bdg
3.0 MB
run_callpeak_pe_narrow_onlychip_control_lambda.bdg
4.4 MB
run_callpeak_pe_narrow_onlychip_peaks.narrowPeak
82.5 kB
run_callpeak_pe_narrow_onlychip_summits.bed
60.3 kB
run_callpeak_pe_narrow_onlychip_treat_pileup.bdg
3.0 MB
standard_results_cmbreps
run_cmbreps_fisher.bdg
13.5 MB
run_cmbreps_max.bdg
7.6 MB
run_cmbreps_mean.bdg
13.5 MB
standard_results_filterdup
run_filterdup_result.bed
1.4 MB
run_filterdup_result_pe.bedpe
1.2 MB
standard_results_pileup
run_pileup_CTRL.bed.bdg
3.2 MB
run_pileup_CTRLPE.bampe.bdg
3.2 MB
run_pileup_CTRLPE.bedpe.bdg
3.2 MB
run_pileup_ChIP.bed.bdg
3.0 MB
run_pileup_ChIPPE.bampe.bdg
3.0 MB
run_pileup_ChIPPE.bedpe.bdg
3.0 MB
standard_results_refinepeak
run_refinepeak_w_ofile.bed
44.4 kB
run_refinepeak_w_prefix_refinepeak.bed
44.4 kB
test_BedGraph.py
4.9 kB
test_BedGraphIO.py
0 Bytes
test_CallPeakUnit.py
0 Bytes
test_FixWidthTrack.py
3.6 kB
test_PairedEndTrack.py
0 Bytes
test_Parser.py
208 Bytes
test_PeakDetect.py
0 Bytes
test_PeakIO.py
1.8 kB
test_PeakModel.py
0 Bytes
test_Pileup.py
3.4 kB
test_Prob.py
5.9 kB
test_ScoreTrack.py
8.5 kB
test_Signal.py
2.9 kB
test_Statistics.py
230 Bytes
test_hashtable.py
0 Bytes