workflowPsiPairedSamples.Rd
This workflow executes the following steps:
Computes the autosum of the sequences with autoSum
.
Computes the distance between paired samples and sums it with distancePairedSamples
.
Computes the dissimilarity measure psi with the function psi
.
Delivers an output of type "list" (default), "data.frame" or "matrix", depending on the user input, through formatPsi
.
workflowPsiPairedSamples( sequences = NULL, grouping.column = NULL, time.column = NULL, exclude.columns = NULL, method = "manhattan", format = "dataframe", parallel.execution = TRUE )
sequences | dataframe with multiple sequences identified by a grouping column generated by |
---|---|
grouping.column | character string, name of the column in |
time.column | character string, name of the column with time/depth/rank data. |
exclude.columns | character string or character vector with column names in |
method | character string naming a distance metric. Valid entries are: "manhattan", "euclidean", "chi", and "hellinger". Invalid entries will throw an error. |
format | string, type of output. One of: "data.frame", "matrix". If |
parallel.execution | boolean, if |
A list, matrix, or dataframe, with sequence names and psi values.