cited_doi,conceptdoi,citations,resource_type,github_url,github_downloads,github_forks,github_languages,github_license,github_stars,github_subscribers,github_topics,github_watchers,zenodo_unique_downloads,zenodo_unique_views,zenodo_version_downloads,zenodo_version_unique_downloads,zenodo_version_unique_views,zenodo_version_views,zenodo_version_volume,zenodo_views,zenodo_volume 10.5281/zenodo.11813,10.5281/zenodo.598352,97,software,,80,,,,,,,,79,3459,198,64,1669,2267,283784440,3949,67734400 10.5281/zenodo.27878,,76,software,https://github.com/Lasagne/Lasagne,26,945,"{""Python"": 864687}",Other,3642,222,"[deep-learning-library, neural-networks, python, theano]",3642,25,1900,26,25,1900,2021,4220164,2021,4220164 10.5281/zenodo.11020,,47,software,https://github.com/dfm/triangle.py,7,148,"{""Python"": 34701, ""TeX"": 4876}",Other,233,21,"[python, plotting, data-analysis, data-visualization]",233,7,645,7,7,645,671,1013229,671,1013229 10.5281/zenodo.22558,,33,publication,,403,,,,,,,,372,1316,403,372,1316,1374,113536876,1374,113536876 10.5281/zenodo.12710,10.5281/zenodo.592845,27,software,https://github.com/mwaskom/seaborn,5,988,"{""Python"": 899185, ""Makefile"": 357, ""Shell"": 143}","BSD 3-Clause ""New"" or ""Revised"" License",6193,240,[],6193,5,2195,179,167,7462,9202,69010672,2365,11556875 10.5281/zenodo.45906,10.5281/zenodo.591491,27,software,https://github.com/dfm/corner.py,2,148,"{""Python"": 34701, ""TeX"": 4876}",Other,233,21,"[python, plotting, data-analysis, data-visualization]",233,2,474,13,13,886,1047,64259829,494,765684 10.5281/zenodo.45133,10.5281/zenodo.592845,21,software,https://github.com/mwaskom/seaborn,9,988,"{""Python"": 899185, ""Makefile"": 357, ""Shell"": 143}","BSD 3-Clause ""New"" or ""Revised"" License",6193,240,[],6193,9,494,179,167,7462,9202,69010672,518,2546874 10.5281/zenodo.16303,,18,software,,14,,,,,,,,12,426,14,12,426,491,15643460,491,15643460 10.5281/zenodo.170284,10.5281/zenodo.742000,18,software,,31,,,,,,,,29,403,44,39,552,656,115313246,441,76699177 10.5281/zenodo.12157,,17,software,https://github.com/dfm/python-fsps,2,17,"{""Python"": 69989, ""Fortran"": 16441}",MIT License,28,17,[],28,2,191,2,2,191,217,96562,217,96562 10.5281/zenodo.54844,10.5281/zenodo.592845,17,software,https://github.com/mwaskom/seaborn,19,988,"{""Python"": 899185, ""Makefile"": 357, ""Shell"": 143}","BSD 3-Clause ""New"" or ""Revised"" License",6193,240,[],6193,19,595,179,167,7462,9202,69010672,635,5477966 10.5281/zenodo.14833,10.5281/zenodo.593200,12,software,https://github.com/astroML/gatspy,34,26,"{""Python"": 126258, ""Makefile"": 217}","BSD 2-Clause ""Simplified"" License",48,11,[],48,34,2490,45,40,2548,2676,21390363,2577,14861774 10.5281/zenodo.18579,10.5281/zenodo.593005,12,software,https://github.com/igrins/plp,6,10,"{""Python"": 899157, ""Jupyter Notebook"": 40933, ""JavaScript"": 5579, ""HTML"": 3412}",,9,9,[],9,4,111,8,5,242,290,342714420,117,212377794 10.5281/zenodo.19108,10.5281/zenodo.592845,12,software,https://github.com/mwaskom/seaborn,11,988,"{""Python"": 899185, ""Makefile"": 357, ""Shell"": 143}","BSD 3-Clause ""New"" or ""Revised"" License",6193,240,[],6193,11,429,179,167,7462,9202,69010672,437,2981638 10.5281/zenodo.34073,,12,publication,,230,,,,,,,,207,236,230,207,236,254,1264327480,254,1264327480 10.5281/zenodo.44579,10.5281/zenodo.592536,12,software,https://github.com/matplotlib/matplotlib,6,4186,"{""Python"": 6382630, ""C++"": 627375, ""Jupyter Notebook"": 94988, ""Objective-C"": 81696, ""JavaScript"": 24731, ""C"": 22456, ""CSS"": 5382, ""HTML"": 4046, ""Shell"": 2072, ""Batchfile"": 942, ""TeX"": 326}",,9477,534,[],9477,6,346,243,69,4228,5303,11040266055,351,330676218 10.5281/zenodo.60550,,12,software,,13,,,,,,,,13,544,13,13,544,589,1192451,589,1192451 10.5281/zenodo.20349,,11,software,,714,,,,,,,,494,4532,714,494,4532,8501,2246997402,8501,2246997402 10.5281/zenodo.31628,10.5281/zenodo.594183,11,software,https://github.com/tanghaibao/goatools,19,117,"{""Python"": 111670251, ""Jupyter Notebook"": 213870, ""Makefile"": 24233, ""Shell"": 1068}","BSD 2-Clause ""Simplified"" License",256,23,"[gene-ontology, genomics, gene-set-enrichment, fdr]",256,16,848,22,19,922,965,50290494,876,8874710 10.5281/zenodo.11938,,10,software,,1,,,,,,,,1,152,1,1,152,167,375347,167,375347 10.5281/zenodo.13276,,10,software,https://github.com/vahtras/loprop,6,1,"{""Python"": 264591, ""Visual Basic"": 58778, ""Roff"": 111, ""Batchfile"": 51, ""Shell"": 42}",GNU General Public License v3.0,4,1,"[quantum-chemistry, dalton, python]",4,6,97,6,6,97,101,333479550,101,333479550 10.5281/zenodo.18775,,10,software,https://github.com/jgagneastro/FireHose_v2,7,0,"{""IDL"": 21565242, ""Ruby"": 5387542, ""Prolog"": 4117212, ""C"": 1513296, ""HTML"": 1436771, ""Fortran"": 1346230, ""TeX"": 444826, ""Shell"": 394186, ""Python"": 329173, ""Cool"": 67085, ""Makefile"": 62012, 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10.5281/zenodo.44222,,10,software,,11,,,,,,,,11,342,11,11,342,350,72870072,350,72870072 10.5281/zenodo.883859,10.5281/zenodo.592845,10,software,https://github.com/mwaskom/seaborn,29,988,"{""Python"": 899185, ""Makefile"": 357, ""Shell"": 143}","BSD 3-Clause ""New"" or ""Revised"" License",6193,240,[],6193,27,1746,179,167,7462,9202,69010672,2087,9123429 10.5281/zenodo.44765,10.5281/zenodo.594576,9,software,https://github.com/MTMurphy77/UVES_popler,0,1,"{""C"": 1225220, ""Makefile"": 55471, ""C++"": 13709, ""TeX"": 1450, ""Shell"": 113}",,4,4,[],4,0,69,0,0,90,106,0,73,0 10.5281/zenodo.53155,10.5281/zenodo.591491,9,software,https://github.com/dfm/corner.py,11,148,"{""Python"": 34701, ""TeX"": 4876}",Other,233,21,"[python, plotting, data-analysis, data-visualization]",233,11,444,13,13,886,1047,64259829,553,63494145 10.5281/zenodo.56818,10.5281/zenodo.594754,9,software,https://github.com/dean0x7d/pybinding,8,28,"{""C++"": 456494, ""Python"": 341395, ""CMake"": 12902, ""Cuda"": 10135, 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10.5281/zenodo.9971,10.5281/zenodo.591577,8,software,https://github.com/soft-matter/trackpy,2,75,"{""Python"": 808910, ""Jupyter Notebook"": 1054, ""Shell"": 108}",Other,169,19,[],169,2,153,8,8,362,397,75476902,157,18843346 10.5281/zenodo.32193,,7,software,https://github.com/bmcfee/librosa,5,483,"{""Python"": 849782, ""MATLAB"": 18269, ""Jupyter Notebook"": 7257, ""Shell"": 985}",ISC License,2825,132,"[audio, python, music, dsp, librosa, scipy, nyucds]",2825,5,182,5,5,182,189,146280690,189,146280690 10.5281/zenodo.47719,10.5281/zenodo.594910,7,software,https://github.com/brianstock/MixSIAR,24,45,"{""R"": 328704, ""TeX"": 63729}",,31,31,[],31,23,213,43,41,439,479,1499472132,237,798239664 10.5281/zenodo.546100,,7,publication,,2344,,,,,,,,2072,19092,2344,2072,19092,20534,1353153696,20534,1353153696 10.5281/zenodo.56159,10.5281/zenodo.594910,7,software,https://github.com/brianstock/MixSIAR,4,45,"{""R"": 328704, ""TeX"": 63729}",,31,31,[],31,4,86,43,41,439,479,1499472132,87,92080428 10.5281/zenodo.15669,10.5281/zenodo.592752,6,software,https://github.com/kbarbary/sep,0,27,"{""C"": 184698, ""Python"": 110828, ""Makefile"": 2637, ""PowerShell"": 2353, ""Batchfile"": 1842, ""TeX"": 650}",,74,20,[],74,0,60,1,1,169,192,567245,61,0 10.5281/zenodo.259534,,6,software,,15,,,,,,,,13,430,15,13,430,475,108905085,475,108905085 10.5281/zenodo.292632,10.5281/zenodo.596700,6,software,https://github.com/sdss/marvin,4,10,"{""Python"": 1491008, ""JavaScript"": 217760, ""CSS"": 210343, ""TSQL"": 154701, ""SQLPL"": 141212, ""HTML"": 69253, ""PLpgSQL"": 1577, ""Shell"": 1150}","BSD 3-Clause ""New"" or ""Revised"" License",29,11,"[astronomy, manga, marvin, sdss]",29,4,84,59,9,197,232,1120894901,87,60450408 10.5281/zenodo.293021,10.5281/zenodo.774759,6,software,,9,,,,,,,,9,351,9,9,351,362,13772430,362,13772430 10.5281/zenodo.30624,,6,software,,,,,,,,,,,,,,,,,, 10.5281/zenodo.34028,,6,software,https://github.com/soft-matter/trackpy,1,75,"{""Python"": 808910, ""Jupyter Notebook"": 1054, ""Shell"": 108}",Other,169,19,[],169,1,155,1,1,155,157,86784,157,86784 10.5281/zenodo.344973,10.5281/zenodo.593372,6,software,https://github.com/KeplerGO/kadenza,3,13,"{""Python"": 91828}",MIT License,11,7,[],11,3,39,3,3,43,44,102957,40,102957 10.5281/zenodo.34938,10.5281/zenodo.594435,6,software,https://github.com/marcharper/python-ternary,21,61,"{""Python"": 59622}",MIT License,217,10,[],217,20,496,30,28,754,801,113692287,506,70753074 10.5281/zenodo.55161,10.5281/zenodo.594351,6,software,https://github.com/manodeep/Corrfunc,2,24,"{""C"": 1674104, ""Python"": 375245, ""Makefile"": 95477, ""C++"": 50395, ""TeX"": 11905}",MIT License,72,9,"[astrophysics, galaxies, cosmology, large-scale-structure, pair-counting, intrinsics, python, c, openmp, simd, avx512, avx2, avx, sse42, correlation-functions]",72,2,67,28,8,158,181,2598457060,70,167617644 10.5281/zenodo.10282,,5,software,https://github.com/aschn/gnuplot-colorbrewer,9,34,"{""Gnuplot"": 46086}",,153,15,[],153,8,196,9,8,196,201,718119,201,718119 10.5281/zenodo.1034511,10.5281/zenodo.1034510,5,software,https://github.com/Szunyike/Long-read-sequencing-of-the-HCMV-transcriptome-with-the-Pacific-Biosciences-RSII-platform,8,0,"{""Visual Basic"": 29498}",,0,0,[],0,6,267,8,6,267,271,206456,271,206456 10.5281/zenodo.1116491,10.5281/zenodo.1116490,5,software,https://github.com/bd-j/prospector,2,23,"{""Python"": 373365}",MIT License,40,21,[],40,2,114,2,2,114,127,5197586,127,5197586 10.5281/zenodo.1165086,10.5281/zenodo.1163815,5,software,https://github.com/jgagneastro/banyan_sigma_idl,0,0,"{""IDL"": 218682, ""Prolog"": 57173}",MIT License,0,1,[],0,0,13,0,0,14,14,0,13,0 10.5281/zenodo.12158,10.5281/zenodo.592762,5,software,https://github.com/SHTOOLS/SHTOOLS,5,44,"{""Fortran"": 1282159, ""Python"": 746299, ""Makefile"": 22659}","BSD 3-Clause ""New"" or ""Revised"" License",91,13,"[spherical-harmonics, spectral-analysis, python, fortran, gravity-field, magnetic-field, topography, slepian-functions]",91,4,90,104,56,643,732,1709696957,96,10167295 10.5281/zenodo.12255,10.5281/zenodo.591577,5,software,https://github.com/soft-matter/trackpy,6,75,"{""Python"": 808910, ""Jupyter Notebook"": 1054, ""Shell"": 108}",Other,169,19,[],169,6,183,8,8,362,397,75476902,199,56633556 10.5281/zenodo.12620,10.5281/zenodo.592834,5,software,https://github.com/biasmv/pv,3,61,"{""JavaScript"": 634313, ""Python"": 16524, ""HTML"": 6736, ""CSS"": 4992, ""Shell"": 337}",MIT License,219,31,[],219,3,341,8,8,736,774,18998560,352,11041695 10.5281/zenodo.12879,10.5281/zenodo.592909,5,software,https://github.com/dgrapov/DeviumWeb,3,44,{},,53,19,[],53,3,94,5,5,184,191,53507631,96,39872619 10.5281/zenodo.166238,,5,publication,,18,,,,,,,,17,199,18,17,199,200,61775460,200,61775460 10.5281/zenodo.167959,,5,publication,,17,,,,,,,,17,78,17,17,78,83,97368826,83,97368826 10.5281/zenodo.16850,10.5281/zenodo.592838,5,software,https://github.com/hyperspy/hyperspy,11,114,"{""Python"": 4216839, ""Jupyter Notebook"": 100688, ""Batchfile"": 103, ""C"": 29}",GNU General Public License v3.0,201,24,"[python, data-visualization, data-analysis, multi-dimensional]",201,7,148,242,81,2653,3587,8969539634,150,78002595 10.5281/zenodo.215824,,5,software,https://github.com/aleimba/bac-genomics-scripts,4,20,"{""Perl"": 428750, ""Shell"": 12613}",GNU General Public License v3.0,24,7,"[perl, bioinformatics, genomics, science, microbial-genomics, microbiology, ngs, sequencing, annotation, mlst, blast, unix, bioperl, scripts-collection, opensource, computational-biology]",24,4,163,4,4,163,187,4161620,187,4161620 10.5281/zenodo.27872,,5,publication,,405,,,,,,,,306,1934,405,306,1934,2005,151271175,2005,151271175 10.5281/zenodo.32790,,5,software,https://github.com/tvwenger/tmbidl,0,0,"{""IDL"": 8910291, ""Prolog"": 4923395, ""HTML"": 410801, ""TeX"": 159505, ""Arc"": 44637, ""Shell"": 8720, ""Python"": 2910, ""Groff"": 1359, ""Fortran"": 577}",MIT License,1,2,[],1,0,130,0,0,130,134,0,134,0 10.5281/zenodo.344520,,5,publication,,12,,,,,,,,12,20,12,12,20,20,6459504,20,6459504 10.5281/zenodo.44637,10.5281/zenodo.592939,5,software,https://github.com/nathanieljohnston/QETLAB,5,11,"{""MATLAB"": 373708}","BSD 2-Clause ""Simplified"" License",24,10,[],24,5,65,5,5,137,146,904755,68,904755 10.5281/zenodo.56067,10.5281/zenodo.593005,5,software,https://github.com/igrins/plp,0,10,"{""Python"": 899157, ""Jupyter Notebook"": 40933, ""JavaScript"": 5579, ""HTML"": 3412}",,9,9,[],9,0,36,8,5,242,290,342714420,38,0 10.5281/zenodo.57855,10.5281/zenodo.595503,5,software,https://github.com/tdecarlo19/coralCT,21,0,"{""MATLAB"": 215758}",MIT License,0,2,[],0,21,286,30,27,358,404,325568061,294,227791683 10.5281/zenodo.59290,10.5281/zenodo.595049,5,software,https://github.com/fiji/Trainable_Segmentation,15,33,"{""Java"": 1172144, ""Shell"": 121}",,46,24,[],46,15,455,29,21,520,594,21670946,492,3758340 10.5281/zenodo.597181,10.5281/zenodo.597181,5,software,https://github.com/zerothi/sisl,42,21,"{""C"": 14563631, ""Python"": 2125409, ""Fortran"": 50709, ""Jupyter Notebook"": 5758, ""Shell"": 5333}",GNU Lesser General Public License v3.0,33,12,"[physics, negf, geometry, density-functional-theory, density-of-states, io, siesta, transiesta, condensed-matter, solid-state-physics, solid-state, graphene, tbtrans, wannier90, gulp, vasp, bigdft]",33,25,227,112,49,572,661,244874638,267,179199762 10.5281/zenodo.59840,10.5281/zenodo.594587,5,software,https://github.com/flav-io/flavio,13,19,"{""Python"": 1025564, ""Makefile"": 54358}",MIT License,29,8,"[flavour-physics, python, hep, physics, high-energy-physics, particle-physics, eft]",29,11,68,431,35,629,728,294614165,82,7958834 10.5281/zenodo.10236,10.5281/zenodo.592174,4,software,https://github.com/gplepage/lsqfit,7,5,"{""Python"": 312057, ""Makefile"": 4263}",GNU General Public License v3.0,17,5,[],17,7,48,278,20,139,169,551544393,50,11355617 10.5281/zenodo.10471,,4,software,https://github.com/genomeannotation/transvestigator,0,0,"{""Python"": 77710, ""Shell"": 2895}",MIT License,2,6,[],2,0,62,0,0,62,66,0,66,0 10.5281/zenodo.1134899,10.5281/zenodo.1134898,4,software,,11,,,,,,,,10,217,11,10,217,230,131798293,230,131798293 10.5281/zenodo.1165085,10.5281/zenodo.1163794,4,software,https://github.com/jgagneastro/banyan_sigma,1,3,"{""Python"": 68690, ""Shell"": 856}",MIT License,6,2,[],6,1,5,1,1,6,6,25528287,5,25528287 10.5281/zenodo.11989,10.5281/zenodo.592348,4,software,https://github.com/dfm/george,1,92,"{""Python"": 90672, ""C++"": 73029, ""Shell"": 2090}",MIT License,292,21,"[python, gaussian-processes, time-series, cpp, c-plus-plus]",292,1,40,5,2,44,48,38170506,41,8516920 10.5281/zenodo.12390,,4,publication,,18,,,,,,,,17,44,18,17,44,44,119696292,44,119696292 10.5281/zenodo.12495,,4,software,https://github.com/mikgroup/bart,0,0,{},,0,3,[],0,0,41,0,0,41,41,0,41,0 10.5281/zenodo.14475,10.5281/zenodo.593209,4,software,https://github.com/jakevdp/supersmoother,2,14,"{""Python"": 50522, ""Makefile"": 245}","BSD 2-Clause ""Simplified"" License",45,4,[],45,2,154,2,2,158,163,478594,158,478594 10.5281/zenodo.14704,,4,publication,,154,,,,,,,,136,32,154,136,32,35,3000608072,35,3000608072 10.5281/zenodo.158920,,4,software,https://github.com/klprint/TrypRNAseq,2,1,"{""CSS"": 23171, ""Python"": 22240, ""HTML"": 16069, ""JavaScript"": 16017}",,1,1,[],1,2,79,2,2,79,92,169295418,92,169295418 10.5281/zenodo.15983,,4,software,https://github.com/reslp/phylo-scripts,0,0,"{""Python"": 12997, ""Shell"": 4167}",,0,1,[],0,0,18,0,0,18,18,0,18,0 10.5281/zenodo.16722,,4,software,,2,,,,,,,,2,71,2,2,71,72,15704596,72,15704596 10.5281/zenodo.200365,,4,software,,50,,,,,,,,47,458,50,47,458,490,2084900,490,2084900 10.5281/zenodo.22057,,4,publication,,94,,,,,,,,82,284,94,82,284,288,138309062,288,138309062 10.5281/zenodo.23657,,4,publication,,58,,,,,,,,42,169,58,42,169,173,8610314252,173,8610314252 10.5281/zenodo.24756,10.5281/zenodo.593867,4,software,https://github.com/c-h-david/rapid,1,14,"{""Fortran"": 453530, ""Shell"": 325164, ""Makefile"": 11280, ""Dockerfile"": 3724}",Other,40,10,[],40,1,85,18,13,179,239,1932148,88,46535 10.5281/zenodo.30769,10.5281/zenodo.596358,4,software,https://github.com/cmci/CorrectBleach,21,0,"{""Java"": 27624}",,0,1,[],0,20,294,22,20,307,340,331449,314,314769 10.5281/zenodo.33624,10.5281/zenodo.591699,4,software,https://github.com/openPMD/openPMD-standard,3,7,{},Other,32,10,"[openpmd, openscience, fileformat, community, research, document, standardization]",32,3,150,4,4,175,194,145257,155,105375 10.5281/zenodo.44404,10.5281/zenodo.592695,4,software,https://github.com/Kevin-Mattheus-Moerman/GIBBON,2,,,,,,,,2,126,12,12,266,269,1044925324,126,192827998 10.5281/zenodo.44961,10.5281/zenodo.591669,4,software,https://github.com/astropy/astroquery,4,189,"{""Python"": 2192465, ""HTML"": 977519, ""Shell"": 8576}","BSD 3-Clause ""New"" or ""Revised"" License",230,32,"[astropy, python, astropy-affiliated, astronomy]",230,4,86,37,8,638,748,106780000,93,10245952 10.5281/zenodo.48795,,4,software,https://github.com/simonspa/resolution-simulator,2,10,"{""C++"": 44561, ""CMake"": 14586, ""Shell"": 2980, ""C"": 894}",GNU Lesser General Public License v3.0,1,1,[],1,2,79,2,2,79,87,64838,87,64838 10.5281/zenodo.49553,10.5281/zenodo.592388,4,software,https://github.com/ALaDyn/ALaDyn,15,11,"{""Fortran"": 998730, ""CMake"": 21171, ""Shell"": 14310, ""C++"": 7172, ""Batchfile"": 955, ""PowerShell"": 635}",GNU General Public License v3.0,18,11,"[pic, laser-plasma-acceleration, beam-plasma-acceleration, plasma]",18,14,217,78,46,487,584,28636966,227,3104775 10.5281/zenodo.50575,,4,software,,6,,,,,,,,6,97,6,6,97,102,37512890,102,37512890 10.5281/zenodo.50641,10.5281/zenodo.594510,4,software,https://github.com/OpenKinect/libfreenect2,63,545,"{""C++"": 866367, ""C"": 125236, ""Cuda"": 78783, ""CMake"": 38449, ""GLSL"": 15027, ""Python"": 5618, ""Batchfile"": 4555, ""Shell"": 2435, ""Makefile"": 2098}",,1405,136,[],1405,62,1979,79,77,2527,2662,21651432,2091,17757306 10.5281/zenodo.51370,,4,software,https://github.com/jesford/cluster-lensing,0,6,"{""Jupyter Notebook"": 336997, ""Python"": 75895}",MIT License,13,9,[],13,0,36,0,0,36,38,0,38,0 10.5281/zenodo.56158,10.5281/zenodo.594576,4,software,https://github.com/MTMurphy77/UVES_popler,0,1,"{""C"": 1225220, ""Makefile"": 55471, ""C++"": 13709, ""TeX"": 1450, ""Shell"": 113}",,4,4,[],4,0,12,0,0,90,106,0,13,0 10.5281/zenodo.594647,10.5281/zenodo.594647,4,software,https://github.com/computationalmodelling/fidimag,2,16,"{""Jupyter Notebook"": 824503, ""Python"": 666764, ""C"": 191690, ""C++"": 22059, ""Dockerfile"": 6680, ""Shell"": 5219, ""Makefile"": 4032}",Other,28,12,[],28,1,0,21,17,182,218,80710598,0,10561748 10.5281/zenodo.60206,10.5281/zenodo.595684,4,software,https://github.com/neurodata/ndmg,2,23,"{""Python"": 335882, ""Dockerfile"": 4559}",Apache License 2.0,26,9,[],26,2,562,5,4,712,788,16499425,624,15059908 10.5281/zenodo.826942,10.5281/zenodo.594754,4,software,https://github.com/dean0x7d/pybinding,31,28,"{""C++"": 456494, ""Python"": 341395, ""CMake"": 12902, ""Cuda"": 10135, ""Shell"": 431}","BSD 2-Clause ""Simplified"" License",67,14,"[scientific-computing, condensed-matter, tight-binding, band-structure, quantum-mechanics, solid-state-physics]",67,28,628,50,43,1069,1208,30040447,702,19608275 10.5281/zenodo.840087,10.5281/zenodo.839854,4,software,https://github.com/hzambran/hydroGOF,2,6,"{""R"": 168232}",,13,4,[],13,2,57,2,2,57,68,284652,67,284652 10.5281/zenodo.853186,10.5281/zenodo.853186,4,software,https://github.com/mctools/ncrystal,6,2,"{""C++"": 1075723, ""Python"": 54594, ""C"": 18696, ""CMake"": 10778, ""Shell"": 2876}",Other,5,4,"[physics-simulation, monte-carlo-simulation, neutrons, scattering]",5,5,40,120,24,155,214,41308407,44,2639454 10.5281/zenodo.886055,10.5281/zenodo.886054,4,software,,2,,,,,,,,2,92,2,2,92,95,49296910,95,49296910 10.5281/zenodo.1041040,10.5281/zenodo.1041039,3,software,https://github.com/kitchenknif/PyATMM,7,1,"{""Python"": 11112}",,0,2,[],0,6,37,7,6,37,39,1453396,39,1453396 10.5281/zenodo.10470,,3,software,https://github.com/genomeannotation/Annie,0,1,"{""Python"": 38490}",MIT License,1,12,[],1,0,14,0,0,14,17,0,17,0 10.5281/zenodo.1048204,10.5281/zenodo.1048203,3,software,,11,,,,,,,,11,67,11,11,67,71,21278004,71,21278004 10.5281/zenodo.1051244,10.5281/zenodo.1051243,3,software,https://github.com/bccp/nbodykit,1,29,"{""Python"": 978488, ""Shell"": 201}",GNU General Public License v3.0,53,19,"[astrophysics, cosmology, large-scale-structure, clustering, data-analysis, python, mpi, mpi4py, parallel-computing]",53,1,29,15,4,77,93,16490430,30,1162609 10.5281/zenodo.10532,10.5281/zenodo.592175,3,software,https://github.com/ankitrohatgi/WebPlotDigitizer,5,107,"{""JavaScript"": 440850, ""Jupyter Notebook"": 129722, ""HTML"": 71221, ""CSS"": 8511, ""Go"": 7249, ""Shell"": 6381, ""C++"": 1538, ""Python"": 1419}",GNU Affero General Public License v3.0,761,59,"[javascript, webplotdigitizer, html, data-mining, visualization, reverse-engineering]",761,5,67,100,68,610,710,1484209149,71,44054150 10.5281/zenodo.10598,,3,software,https://github.com/dfm/triangle.py,1,148,"{""Python"": 34701, ""TeX"": 4876}",Other,233,21,"[python, plotting, data-analysis, data-visualization]",233,1,85,1,1,85,85,144573,85,144573 10.5281/zenodo.1119025,10.5281/zenodo.1119025,3,software,,5,,,,,,,,5,150,5,5,150,162,40531195,162,40531195 10.5281/zenodo.11377,,3,software,https://github.com/mlafave/sam2pairwise,0,3,"{""C++"": 14248, ""Shell"": 8232, ""Makefile"": 509}",,14,4,[],14,0,78,0,0,78,80,0,80,0 10.5281/zenodo.1161381,10.5281/zenodo.1161380,3,other,,2,,,,,,,,2,1422,2,2,1422,1467,1822391330,1467,1822391330 10.5281/zenodo.1161476,10.5281/zenodo.1161475,3,software,,1,,,,,,,,1,44,1,1,44,45,2212467915,45,2212467915 10.5281/zenodo.1163398,10.5281/zenodo.1163397,3,software,https://github.com/adeffur/ANIMA,2,0,"{""R"": 717249}",Other,0,1,[],0,1,29,5,3,31,33,11508306,30,4606082 10.5281/zenodo.1167670,10.5281/zenodo.1167669,3,software,https://github.com/patzaw/neo2R,0,0,"{""R"": 7061}",GNU General Public License v3.0,1,1,[],1,0,23,12,6,28,29,99936,23,0 10.5281/zenodo.1198885,10.5281/zenodo.1198884,3,software,https://github.com/datascienceinc/Skater,4,124,"{""Python"": 318969, ""Shell"": 1992}",Universal Permissive License v1.0,779,56,"[ml, predictive-modeling, machine-learning, modeling-tools, model-interpretation, blackbox, datascience, python, model-explanation, explanation-system, deep-learning, deep-neural-networks, attribution, lstm-neural-networks, cnn-classification]",779,3,157,24,13,206,250,3022141953,181,97163740 10.5281/zenodo.12902,10.5281/zenodo.593013,3,software,,7,,,,,,,,7,204,8,8,220,237,53280589,210,46443397 10.5281/zenodo.12914,,3,software,https://github.com/pbfrandsen/fast_TIGER,12,0,"{""C++"": 270723, ""C"": 6153, ""Groff"": 3129, ""Makefile"": 296}",GNU General Public License v2.0,1,2,[],1,12,156,12,12,156,159,11649768,159,11649768 10.5281/zenodo.1308157,10.5281/zenodo.1308157,3,software,https://github.com/strengejacke/sjPlot,35,49,"{""R"": 769569}",,275,24,"[statistics, data-visualization, r, social-sciences, plotting]",275,35,317,101,82,2128,2401,489938982,355,178854060 10.5281/zenodo.13688,,3,software,https://github.com/tylerjereddy/py_sphere_Voronoi,1,10,"{""Jupyter Notebook"": 4664341, ""Python"": 77927}",MIT License,18,5,[],18,1,47,1,1,47,51,1594448,51,1594448 10.5281/zenodo.13740,10.5281/zenodo.593018,3,software,https://github.com/mlubin/JuMPChance.jl,1,4,"{""Julia"": 74689}",Other,12,7,[],12,1,93,3,3,99,110,94530,96,28486 10.5281/zenodo.14561,10.5281/zenodo.593044,3,software,https://github.com/bbglab/muts-needle-plot,12,21,"{""JavaScript"": 81524, ""CSS"": 2322, ""HTML"": 1395}",Other,20,9,[],20,12,170,12,12,279,327,3308064,180,3308064 10.5281/zenodo.14809,10.5281/zenodo.608046,3,dataset,,30,,,,,,,,29,659,30,29,659,717,68604900,717,68604900 10.5281/zenodo.15423,10.5281/zenodo.592536,3,software,https://github.com/matplotlib/matplotlib,7,4186,"{""Python"": 6382630, ""C++"": 627375, ""Jupyter Notebook"": 94988, ""Objective-C"": 81696, ""JavaScript"": 24731, ""C"": 22456, ""CSS"": 5382, ""HTML"": 4046, ""Shell"": 2072, ""Batchfile"": 942, ""TeX"": 326}",,9477,534,[],9477,7,434,243,69,4228,5303,11040266055,437,360332448 10.5281/zenodo.154400,,3,publication,,14,,,,,,,,14,29,14,14,29,30,63949480,30,63949480 10.5281/zenodo.154483,10.5281/zenodo.594642,3,software,https://github.com/aopp-pred/rpe,1,6,"{""Fortran"": 107652, ""Python"": 21687, ""Makefile"": 15898, ""Shell"": 10138, ""Pascal"": 1267}",Apache License 2.0,4,5,[],4,1,20,1,1,22,23,532221,21,532221 10.5281/zenodo.155068,,3,publication,,8,,,,,,,,8,67,8,8,67,69,7651512,69,7651512 10.5281/zenodo.165132,10.5281/zenodo.596747,3,software,https://github.com/klprint/DESeqUI,2,1,"{""R"": 17472}",,0,1,[],0,2,65,3,3,77,84,2403282,69,1305668 10.5281/zenodo.166019,,3,publication,,29,,,,,,,,28,127,29,28,127,131,227108106,131,227108106 10.5281/zenodo.17560,10.5281/zenodo.593588,3,software,https://github.com/broadinstitute/viral-ngs,10,37,"{""Python"": 1486010, ""Shell"": 74992, ""wdl"": 63554, ""Perl"": 4433, ""Dockerfile"": 2312, ""Roff"": 597}",Other,101,20,"[viral-ngs, viral, genomics, genome, genome-assembly, genome-sequencing, bam, fastq, variant-calling, variant-annotations, illumina]",101,7,103,470,27,420,497,10638630007,110,125488000 10.5281/zenodo.20045,,3,software,https://github.com/fredRos/pypmc,0,6,"{""Python"": 358152, ""Makefile"": 6999}",GNU General Public License v2.0,26,3,"[clustering, python, variational-bayes, population-monte-carlo, markov-chain, importance-sampling, cython]",26,0,21,0,0,21,21,0,21,0 10.5281/zenodo.20920,10.5281/zenodo.592762,3,software,https://github.com/SHTOOLS/SHTOOLS,6,44,"{""Fortran"": 1282159, ""Python"": 746299, ""Makefile"": 22659}","BSD 3-Clause ""New"" or ""Revised"" License",91,13,"[spherical-harmonics, spectral-analysis, python, fortran, gravity-field, magnetic-field, topography, slepian-functions]",91,4,87,104,56,643,732,1709696957,89,31527474 10.5281/zenodo.22281,,3,software,https://github.com/JoFrhwld/FAVE,2,25,"{""Python"": 312543, ""TeX"": 99}",GNU General Public License v3.0,58,11,[],58,2,81,2,2,81,87,60251366,87,60251366 10.5281/zenodo.242643,10.5281/zenodo.729408,3,publication,,12,,,,,,,,11,37,12,11,37,40,18157776,40,18157776 10.5281/zenodo.262111,,3,software,,5,,,,,,,,5,60,5,5,60,62,23623070,62,23623070 10.5281/zenodo.28016,10.5281/zenodo.592485,3,software,https://github.com/wkerzendorf/starkit,3,0,"{""Python"": 140770}",,0,1,[],0,2,72,6,5,99,115,52809546,78,25836234 10.5281/zenodo.28019,10.5281/zenodo.592119,3,publication,https://github.com/biocaddie/WG3-MetadataSpecifications,12,11,"{""Python"": 6643}",,21,35,"[data-discovery, dats-model, data-modeling, json-schemas, json-ld, schema-org]",21,12,434,44,38,896,1010,238354936,482,10480956 10.5281/zenodo.283096,,3,publication,,0,,,,,,,,0,34,0,0,34,55,0,55,0 10.5281/zenodo.30281,10.5281/zenodo.593065,3,software,https://github.com/TheoryInPractice/CONCUSS,0,6,"{""Python"": 258147, ""Shell"": 8862}",Other,6,3,[],6,0,11,0,0,28,30,0,11,0 10.5281/zenodo.30938,,3,software,https://github.com/coleoguy/evobir,5,5,"{""R"": 47182}",,9,3,[],9,5,99,5,5,99,102,553545,102,553545 10.5281/zenodo.31202,10.5281/zenodo.592640,3,software,https://github.com/richarddmorey/BayesFactor,1,30,"{""R"": 304271, ""C++"": 103300, ""CSS"": 1852, ""C"": 1057, ""Rebol"": 292}",,87,14,[],87,1,76,1,1,133,151,340649,88,340649 10.5281/zenodo.32912,,3,publication,,126,,,,,,,,91,364,126,91,364,373,3872400840,373,3872400840 10.5281/zenodo.34044,,3,publication,,55,,,,,,,,50,147,55,50,147,163,34001605,163,34001605 10.5281/zenodo.34142,10.5281/zenodo.593323,3,software,https://github.com/petebrew/fhaes,1,1,"{""Java"": 2179448, ""PostScript"": 158743, ""NSIS"": 23293, ""JavaScript"": 1447, ""HTML"": 1292, ""Shell"": 800}",GNU General Public License v3.0,4,4,[],4,1,35,1,1,55,67,14931339,37,14931339 10.5281/zenodo.35117,10.5281/zenodo.595481,3,software,https://github.com/vtraag/louvain-igraph,5,34,"{""Python"": 196251, ""C++"": 194804, ""Shell"": 1827, ""Batchfile"": 1667}",GNU General Public License v3.0,143,11,"[louvain-algorithm, louvain, community-detection]",143,5,329,12,11,457,502,3478009,342,292795 10.5281/zenodo.35389,10.5281/zenodo.593009,3,software,https://github.com/ftalbrecht/dune-gdt,0,1,"{""C++"": 1235738, ""CMake"": 5508}","BSD 2-Clause ""Simplified"" License",0,1,[],0,0,22,0,0,26,26,0,22,0 10.5281/zenodo.40565,10.5281/zenodo.592682,3,software,https://github.com/lebedov/scikit-cuda,1,130,"{""Python"": 1108185, ""C"": 12944, ""Makefile"": 473}",Other,624,44,"[python, gpu, cuda, blas, lapack, numerical, cublas, cusolver, cufft, pycuda]",624,1,108,7,5,186,216,1171876,113,182437 10.5281/zenodo.44283,10.5281/zenodo.593315,3,software,https://github.com/KeplerGO/K2fov,0,11,"{""Python"": 166771}",MIT License,6,3,[],6,0,17,0,0,33,35,0,18,0 10.5281/zenodo.46656,,3,publication,,4,,,,,,,,4,16,4,4,16,16,2311948,16,2311948 10.5281/zenodo.47798,10.5281/zenodo.591483,3,software,https://github.com/diana-hep/carl,1,16,"{""Python"": 142285, ""Mako"": 33700, ""Shell"": 2653, ""TeX"": 433}","BSD 3-Clause ""New"" or ""Revised"" License",52,13,[],52,1,127,2,2,133,138,1924107,131,964544 10.5281/zenodo.47887,10.5281/zenodo.593200,3,software,https://github.com/astroML/gatspy,8,26,"{""Python"": 126258, ""Makefile"": 217}","BSD 2-Clause ""Simplified"" License",48,11,[],48,8,45,45,40,2548,2676,21390363,49,4742096 10.5281/zenodo.48902,,3,dataset,,2,,,,,,,,2,110,2,2,110,115,328674595,115,328674595 10.5281/zenodo.50186,10.5281/zenodo.596855,3,software,https://github.com/nipy/nipype,10,382,"{""Python"": 6620896, ""Tcl"": 44554, ""Shell"": 16134, ""HTML"": 9823, ""Makefile"": 2368, ""MATLAB"": 1718}",Other,439,57,"[python, workflow-engine, brain-imaging, big-data, dataflow, data-science, dataflow-programming, neuroimaging]",439,7,224,246,28,951,1160,1001859352,231,37218870 10.5281/zenodo.50982,,3,software,https://github.com/clawpack/clawpack,11,65,"{""Python"": 9731, ""Shell"": 1215}","BSD 3-Clause ""New"" or ""Revised"" License",90,18,[],90,11,81,11,11,81,83,50743044,83,50743044 10.5281/zenodo.545778,,3,publication,,172,,,,,,,,157,362,172,157,362,395,58117940,395,58117940 10.5281/zenodo.546148,10.5281/zenodo.594104,3,software,https://github.com/prisms-center/CASMcode,5,38,"{""C++"": 4189239, ""Python"": 979270, ""M4"": 72896, ""Shell"": 51355, ""Dockerfile"": 5141, ""Makefile"": 2577, ""MATLAB"": 840}",Other,43,28,[],43,5,149,6,6,202,241,14598844,180,12305765 10.5281/zenodo.55143,,3,software,https://github.com/soft-matter/trackpy,3,75,"{""Python"": 808910, ""Jupyter Notebook"": 1054, ""Shell"": 108}",Other,169,19,[],169,3,64,3,3,64,66,246222,66,246222 10.5281/zenodo.55256,10.5281/zenodo.596640,3,software,https://github.com/PascalKieslich/mousetrap,0,5,"{""R"": 348711, ""C++"": 66690}",GNU General Public License v3.0,15,6,"[mouse-tracking, r, analysis, visualization, clustering]",15,0,4,2,2,182,194,3052648,4,0 10.5281/zenodo.557093,10.5281/zenodo.601555,3,publication,,482,,,,,,,,426,673,641,540,808,898,12477271934,718,9335464688 10.5281/zenodo.56091,10.5281/zenodo.595246,3,software,https://github.com/bobbypaton/GoodVibes,4,11,"{""Python"": 87106}",MIT License,20,10,"[compchem, thermochemistry, gaussian, vibrational-entropies, temperature, quasi-harmonic]",20,4,92,118,105,1199,1425,47456885,96,1699876 10.5281/zenodo.56660,,3,publication,,19,,,,,,,,16,26,19,16,26,28,35296148,28,35296148 10.5281/zenodo.56686,,3,dataset,https://github.com/aleimba/ecoli_VF_collection,6,0,{},Creative Commons Attribution 4.0 International,2,1,"[bioinformatics, annotation, genomics, microbial-genomics, microbiology, ecoli, opensource, science, virulence, pathogenicity, database, computational-biology, virulence-factor]",2,4,49,6,4,49,53,1703388,53,1703388 10.5281/zenodo.580821,10.5281/zenodo.596102,3,software,https://github.com/California-Planet-Search/radvel,13,23,"{""Python"": 251649, ""TeX"": 4290, ""C"": 2270}",MIT License,24,12,[],24,10,123,252,30,162,178,695125699,133,36161190 10.5281/zenodo.58491,,3,software,,9,,,,,,,,8,66,9,8,66,67,49907,67,49907 10.5281/zenodo.59786,10.5281/zenodo.594625,3,software,https://github.com/piermorel/gramm,3,100,"{""MATLAB"": 339125, ""HTML"": 151624, ""TeX"": 12767, ""M"": 633}",MIT License,326,62,"[matlab, visualization, stats, plot, data-visualization, statistics]",326,3,594,12,11,691,706,22503146,594,3971325 10.5281/zenodo.60053,10.5281/zenodo.595724,3,software,https://github.com/exa-analytics/exatomic,1,7,"{""Python"": 879305, ""JavaScript"": 130902, ""Jupyter Notebook"": 13176, ""Batchfile"": 814, ""Shell"": 711}",Apache License 2.0,8,3,"[chemistry, computational-chemistry, theoretical-physics, visualization]",8,1,24,5,4,56,60,167672481,24,177276 10.5281/zenodo.60142,10.5281/zenodo.594104,3,software,https://github.com/prisms-center/CASMcode,1,38,"{""C++"": 4189239, ""Python"": 979270, ""M4"": 72896, ""Shell"": 51355, ""Dockerfile"": 5141, ""Makefile"": 2577, ""MATLAB"": 840}",Other,43,28,[],43,1,59,6,6,202,241,14598844,61,2293079 10.5281/zenodo.60221,10.5281/zenodo.592174,3,software,https://github.com/gplepage/lsqfit,10,5,"{""Python"": 312057, ""Makefile"": 4263}",GNU General Public License v3.0,17,5,[],17,5,27,278,20,139,169,551544393,29,17296150 10.5281/zenodo.60223,,3,publication,,288,,,,,,,,276,665,288,276,665,685,96563808,685,96563808 10.5281/zenodo.60736,,3,software,,20,,,,,,,,20,445,20,20,445,458,946560,458,946560 10.5281/zenodo.60808,10.5281/zenodo.591597,3,software,https://github.com/nipy/nibabel,3,165,"{""Python"": 2400807, ""Makefile"": 7681, ""Shell"": 4790, ""PowerShell"": 2988, ""MATLAB"": 2702}",Other,261,42,[],261,3,113,92,14,541,674,288534681,122,11330862 10.5281/zenodo.61108,10.5281/zenodo.597553,3,software,https://github.com/markummitchell/engauge-digitizer,8,92,"{""C++"": 3415468, ""HTML"": 80889, ""QMake"": 70936, ""Python"": 62456, ""Shell"": 55478, ""C"": 25616, ""Batchfile"": 9757, ""Gnuplot"": 1550, ""CSS"": 486, ""Dockerfile"": 242}",GNU General Public License v2.0,500,46,"[digitizer, image-analysis, extract-data, utility]",500,4,103,1236,767,4148,4717,83334237274,104,85009720 10.5281/zenodo.61166,10.5281/zenodo.595760,3,software,https://github.com/zqhuang/COOP,0,2,"{""Fortran"": 4343031, ""Python"": 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10.5281/zenodo.1006698,10.5281/zenodo.1006697,2,dataset,https://github.com/travc/paper-Predicted-MF-Quarantine-Length-Data-and-Code,1,0,"{""Jupyter Notebook"": 2855884, ""Shell"": 10390, ""Python"": 3371}",MIT License,0,1,[],0,1,33,1,1,33,35,422923127,35,422923127 10.5281/zenodo.1009065,10.5281/zenodo.1009064,2,software,,6,,,,,,,,6,31,6,6,31,32,1353816,32,1353816 10.5281/zenodo.1009163,10.5281/zenodo.808831,2,software,https://github.com/knights-lab/shi7,0,3,"{""Python"": 139460, ""C"": 25036, ""Shell"": 312, ""Makefile"": 310}",GNU Affero General Public License v3.0,13,8,[],13,0,2,4,2,63,75,16719324,2,0 10.5281/zenodo.1010415,10.5281/zenodo.1010415,2,dataset,,5,,,,,,,,2,40,5,2,40,45,3619458,45,3619458 10.5281/zenodo.10202,,2,image,,55,,,,,,,,49,303,55,49,303,318,10032852885,318,10032852885 10.5281/zenodo.10204,,2,software,https://github.com/F1000Research/cytoscape-wikipathways-app,0,0,{},,0,1,[],0,0,33,0,0,33,33,0,33,0 10.5281/zenodo.1022770,10.5281/zenodo.1022769,2,software,,4,,,,,,,,4,47,4,4,47,49,16949524,49,16949524 10.5281/zenodo.10237,10.5281/zenodo.592232,2,software,https://github.com/gplepage/corrfitter,4,1,"{""Python"": 158995, ""Makefile"": 3718, ""BitBake"": 172}",GNU General Public License v3.0,5,3,[],5,4,15,95,12,45,54,290386012,16,6077080 10.5281/zenodo.10385,,2,software,https://github.com/F1000Research/CytoscapePlugIn,2,0,{},,0,1,[],0,2,30,2,2,30,31,132406,31,132406 10.5281/zenodo.1039642,10.5281/zenodo.1039641,2,software,https://github.com/hkoohy/Machine_Learning_in_Life_Sciences,4,1,"{""HTML"": 43472, ""R"": 3968}",,2,1,[],2,3,53,4,3,53,54,150524,54,150524 10.5281/zenodo.10438,,2,software,https://github.com/JasonFriedman/RepeatedMeasures,0,8,"{""MATLAB"": 838654, ""C"": 195791, ""C++"": 91980, ""Makefile"": 4289, ""M"": 4171}",Other,17,5,[],17,0,44,0,0,44,45,0,45,0 10.5281/zenodo.1051310,10.5281/zenodo.1051309,2,software,https://github.com/rainwoodman/fastpm-python,0,3,"{""Jupyter 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10.5281/zenodo.11304,10.5281/zenodo.591659,2,software,https://github.com/thoppe/Encyclopedia-of-Finite-Graphs,1,0,"{""C++"": 333813, ""Python"": 101697, ""TeX"": 63594, ""C"": 31884, ""Makefile"": 5014}",GNU General Public License v2.0,9,2,[],9,1,33,1,1,40,42,359203,34,359203 10.5281/zenodo.1133609,10.5281/zenodo.1133608,2,other,,4,,,,,,,,3,43,19,11,78,89,165869,46,43320 10.5281/zenodo.1143675,10.5281/zenodo.801458,2,software,https://github.com/SuperDARN/rst,10,6,"{""C"": 4390792, ""IDL"": 805708, ""Makefile"": 192664, ""Shell"": 72431, ""C++"": 64548, ""Prolog"": 56962, ""Objective-C"": 19470, ""Scheme"": 5669, ""Scilab"": 5661, ""SAS"": 5626, ""CSS"": 2974, ""JavaScript"": 1270}",,9,14,"[superdarn, c, idl]",9,6,68,26,13,150,205,290998376,78,106651860 10.5281/zenodo.11459,,2,software,https://github.com/nkeim/philatracks,0,1,"{""Python"": 68262, ""Makefile"": 5584, ""Batchfile"": 5106}",Other,0,3,[],0,0,16,0,0,16,16,0,16,0 10.5281/zenodo.1146104,10.5281/zenodo.1146075,2,software,https://github.com/JCVenterInstitute/HumanSubtractionDB1,4,0,"{""Shell"": 14703, ""Perl"": 2351}",,0,6,[],0,2,24,6,3,28,28,10469894,24,10465132 10.5281/zenodo.1146916,10.5281/zenodo.594718,2,software,,1,,,,,,,,1,39,3,1,42,42,671780,39,151277 10.5281/zenodo.11581,,2,publication,,10,,,,,,,,10,52,10,10,52,53,4974400,53,4974400 10.5281/zenodo.1158836,10.5281/zenodo.1158835,2,software,https://github.com/psychoinformatics-de/studyforrest-paper-auditorydecoding,2,0,"{""Python"": 16458, ""Shell"": 9092}",MIT License,1,2,[],1,1,17,2,1,17,17,132832,17,132832 10.5281/zenodo.1164038,10.5281/zenodo.1164037,2,software,,3,,,,,,,,2,68,105,55,395,461,33982424938,72,1437582500 10.5281/zenodo.1164284,10.5281/zenodo.1164283,2,software,,0,,,,,,,,0,13,0,0,13,13,0,13,0 10.5281/zenodo.1168739,10.5281/zenodo.1168738,2,software,https://github.com/johnksander/BreatheEasyEDA,5,0,"{""MATLAB"": 74738, ""Objective-C"": 336}",GNU General Public License v3.0,2,3,[],2,5,76,5,5,76,82,7033795,82,7033795 10.5281/zenodo.11698,,2,software,https://github.com/planetserver/webclient-neo,0,0,"{""JavaScript"": 5445968, ""CSS"": 97621, ""Python"": 15793, ""PHP"": 13852, ""C"": 1364}",GNU General Public License v3.0,0,3,[],0,0,8,0,0,8,8,0,8,0 10.5281/zenodo.1170572,10.5281/zenodo.1170571,2,software,,5,,,,,,,,4,42,5,4,42,45,1148080,45,1148080 10.5281/zenodo.1174079,10.5281/zenodo.1174078,2,software,,6,,,,,,,,6,61,6,6,61,65,2424960,65,2424960 10.5281/zenodo.1174374,10.5281/zenodo.1174373,2,software,https://github.com/brittonsmith/ytree,4,4,"{""Python"": 250149}",Other,9,6,"[data, analytics, python, astronomy, astrophysics, merger-tree, merger-trees]",9,2,35,27,6,70,77,3864903,36,460864 10.5281/zenodo.1175163,10.5281/zenodo.1175162,2,publication,,3,,,,,,,,3,24,3,3,24,25,3280035,25,3280035 10.5281/zenodo.11827,,2,software,https://github.com/tylerjereddy/diffusion_analysis_MD_simulations,6,6,"{""Jupyter Notebook"": 227121, ""JavaScript"": 54587, 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10.5281/zenodo.1205753,10.5281/zenodo.596622,2,software,https://github.com/choderalab/openmmtools,2,25,"{""Python"": 1771496, ""Shell"": 3673, ""Batchfile"": 139}",MIT License,50,24,"[openmm, molecular-dynamics, alchemical-free-energy-calculations, integrators, free-energy-calculations, molecular-simulations, python, mcmc, markov-chain-monte-carlo, replica-exchange]",50,1,18,30,11,94,115,347872221,20,23146910 10.5281/zenodo.1206100,10.5281/zenodo.1203274,2,software,https://github.com/RahmanTeamDevelopment/CoverView,4,0,"{""JavaScript"": 1379229, ""HTML"": 1082646, ""Python"": 226038, ""CSS"": 15559, ""Shell"": 2442, ""Makefile"": 1577}",MIT License,2,6,[],2,2,33,29,19,103,128,104389843,37,14398704 10.5281/zenodo.1210204,10.5281/zenodo.1210203,2,software,https://github.com/rbutleriii/Clinotator,27,0,"{""Python"": 33206}",GNU General Public License v3.0,5,3,[],5,27,297,32,29,308,752,1781952,636,1492641 10.5281/zenodo.1213306,10.5281/zenodo.1213305,2,software,,92,,,,,,,,32,308,92,32,308,733,251348739,733,251348739 10.5281/zenodo.1213573,10.5281/zenodo.1213573,2,software,https://github.com/agbarnett/decimal.places,2,0,"{""R"": 18151}",,0,0,"[statistics, journals, decimal-places]",0,2,25,3,3,51,52,7658084,25,5362604 10.5281/zenodo.1215650,10.5281/zenodo.1201323,2,dataset,,55,,,,,,,,40,48,75,52,69,80,200821675992,56,182720664975 10.5281/zenodo.1216011,10.5281/zenodo.1216010,2,software,https://github.com/fangohr/finmag,17,2,"{""Jupyter Notebook"": 2476782, ""Python"": 2209440, ""C++"": 217347, ""C"": 184482, ""Shell"": 46273, ""Makefile"": 25720, ""Gnuplot"": 10664, ""Dockerfile"": 9811, ""GLSL"": 5733, ""Ruby"": 5470}",Other,6,3,[],6,16,226,17,16,226,251,223599725,251,223599725 10.5281/zenodo.1217007,10.5281/zenodo.1217006,2,software,https://github.com/GooStats/GooStats,5,2,"{""C++"": 725847, ""Cuda"": 179944, ""CMake"": 170743, ""Makefile"": 6698, ""Shell"": 3156, ""Python"": 2820, 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""Makefile"": 4685, ""Objective-C"": 1257, ""Batchfile"": 1140, ""Vim script"": 1022, ""Awk"": 959}",Other,4,7,[],4,5,74,5,5,74,87,18604290,87,18604290 10.5281/zenodo.12400,10.5281/zenodo.592536,2,software,https://github.com/matplotlib/matplotlib,5,4186,"{""Python"": 6382630, ""C++"": 627375, ""Jupyter Notebook"": 94988, ""Objective-C"": 81696, ""JavaScript"": 24731, ""C"": 22456, ""CSS"": 5382, ""HTML"": 4046, ""Shell"": 2072, ""Batchfile"": 942, ""TeX"": 326}",,9477,534,[],9477,5,185,243,69,4228,5303,11040266055,187,258546670 10.5281/zenodo.1243931,10.5281/zenodo.1243930,2,software,,0,,,,,,,,0,14,0,0,14,21,0,21,0 10.5281/zenodo.1244150,10.5281/zenodo.1167663,2,software,https://github.com/patzaw/BED,4,1,"{""R"": 280016}",GNU General Public License v3.0,4,2,[],4,2,21,23,9,34,37,102610434,22,18806104 10.5281/zenodo.1246814,10.5281/zenodo.1246813,2,software,https://github.com/cytoscape/idmapper,0,0,"{""Java"": 83492}",,2,17,[identifier-mapping],2,0,208,0,0,208,396,0,396,0 10.5281/zenodo.1250447,10.5281/zenodo.1250446,2,dataset,,173,,,,,,,,44,140,173,44,140,156,21597407074,156,21597407074 10.5281/zenodo.1252524,10.5281/zenodo.1252523,2,software,https://github.com/RPGroup-PBoC/mscl_survival,0,1,"{""Jupyter Notebook"": 59502681, ""HTML"": 30792274, ""Python"": 475061, ""CSS"": 44529, ""Stan"": 22179, ""JavaScript"": 14996, ""Ruby"": 819}",MIT License,0,1,"[research, biophysics, image-processing, bayesian-inference]",0,0,14,8,5,57,66,3718860240,14,0 10.5281/zenodo.1253039,10.5281/zenodo.1253038,2,software,,7,,,,,,,,7,25,7,7,25,25,21413,25,21413 10.5281/zenodo.1255864,10.5281/zenodo.610952,2,software,,18,,,,,,,,5,70,19,6,129,152,26162629,84,26123423 10.5281/zenodo.12635,,2,dataset,,11,,,,,,,,11,77,11,11,77,79,6296426631,79,6296426631 10.5281/zenodo.12665,,2,software,,6,,,,,,,,6,38,6,6,38,38,262446,38,262446 10.5281/zenodo.12781,,2,dataset,,75,,,,,,,,35,1864,75,35,1864,1937,9868895737,1937,9868895737 10.5281/zenodo.1284246,10.5281/zenodo.1248509,2,software,https://github.com/korseby/container-mtbls520,5,0,"{""R"": 88039, ""Shell"": 7818, ""Dockerfile"": 1778}",Apache License 2.0,0,1,[],0,5,67,6,6,74,78,12140731,68,11352655 10.5281/zenodo.1287302,10.5281/zenodo.1287302,2,software,https://github.com/idekerlab/aMatReader,0,0,"{""Java"": 71887, ""Python"": 22280}",,0,0,[],0,0,32,0,0,32,32,0,32,0 10.5281/zenodo.1287307,10.5281/zenodo.1287306,2,software,https://github.com/cytoscape/copycat-layout,0,0,"{""Jupyter Notebook"": 280117, ""Java"": 39079, ""Python"": 14160}",,1,10,[],1,0,32,0,0,32,32,0,32,0 10.5281/zenodo.1288697,10.5281/zenodo.1288696,2,software,https://github.com/NuGrid/NuPyCEE,0,9,"{""Jupyter Notebook"": 15053587, ""HTML"": 1367502, ""Python"": 752164, ""Fortran"": 185287, ""JavaScript"": 91558, ""TeX"": 35544, ""CSS"": 17813, ""Makefile"": 12344, ""Batchfile"": 6714, ""Shell"": 4007}","BSD 3-Clause ""New"" or ""Revised"" License",13,10,"[galaxies, chemical-evolution, nugrid]",13,0,72,0,0,72,87,0,87,0 10.5281/zenodo.12887,10.5281/zenodo.592324,2,software,https://github.com/smuething/dune-multidomaingrid,0,0,"{""C++"": 273290, ""CMake"": 6815, ""Makefile"": 4725, ""M4"": 1169}",Other,2,2,[],2,0,10,0,0,10,10,0,10,0 10.5281/zenodo.1289908,10.5281/zenodo.1289907,2,software,,26,,,,,,,,24,78,26,24,78,82,44096,82,44096 10.5281/zenodo.1291375,10.5281/zenodo.1291374,2,dataset,,113,,,,,,,,59,99,113,59,99,116,985422612480,116,985422612480 10.5281/zenodo.1291404,10.5281/zenodo.1291403,2,dataset,,46,,,,,,,,18,64,46,18,64,70,435341547520,70,435341547520 10.5281/zenodo.1291443,10.5281/zenodo.1291442,2,dataset,,124,,,,,,,,20,70,124,20,70,76,1191351091200,76,1191351091200 10.5281/zenodo.1291522,10.5281/zenodo.1291521,2,dataset,,78,,,,,,,,35,92,78,35,92,102,28185178597,102,28185178597 10.5281/zenodo.1292312,10.5281/zenodo.1292095,2,software,https://github.com/RGLab/DataPackageR,8,16,"{""R"": 132612, ""TeX"": 1276}",Other,108,14,"[r, r-package, reproducibility, rstats, peer-reviewed]",108,4,6,81,18,118,132,24887309,6,734248 10.5281/zenodo.1297013,10.5281/zenodo.1297012,2,software,https://github.com/phicau/olaFlow,30,4,"{""C++"": 651380, ""C"": 509786, ""Objective-C"": 73850, ""Shell"": 25977, ""Python"": 23978}",,9,3,[],9,28,388,30,28,388,426,90652710,426,90652710 10.5281/zenodo.1297190,10.5281/zenodo.594576,2,software,https://github.com/MTMurphy77/UVES_popler,0,1,"{""C"": 1225220, ""Makefile"": 55471, ""C++"": 13709, ""TeX"": 1450, ""Shell"": 113}",,4,4,[],4,0,14,0,0,90,106,0,20,0 10.5281/zenodo.1308048,10.5281/zenodo.1308048,2,software,https://github.com/vkuznet/TFaaS,0,3,"{""JavaScript"": 5218027, ""C++"": 66971, ""CSS"": 60734, ""Go"": 39195, ""Python"": 20348, ""HTML"": 11491, ""PureBasic"": 2731, ""Makefile"": 2555, ""Dockerfile"": 1798, ""Shell"": 588}",MIT License,45,9,"[tensorflow, python, go, tf-model, inference, machine-learning, deeplearning, tensorflow-models, prediction, tfaas-server]",45,0,20,0,0,20,22,0,22,0 10.5281/zenodo.1314669,10.5281/zenodo.1314499,2,software,https://github.com/NESTCollaboration/nest,7,3,"{""C++"": 253063, ""CMake"": 6018}",Other,3,19,"[physics-simulation-library, physics, xenon, argon, microphysics-routines, dark-matter]",3,5,228,14,8,261,312,1173952,267,584864 10.5281/zenodo.13193,,2,software,https://github.com/smuething/dune-multidomain,0,0,"{""C++"": 587222, ""C"": 5419}",Other,1,2,[],1,0,11,0,0,11,11,0,11,0 10.5281/zenodo.1327591,10.5281/zenodo.1327591,2,software,https://github.com/ejhigson/perfectns,8,0,"{""Python"": 147364}",MIT License,5,3,"[nested-sampling, dynamic-nested-sampling, pure-python, bayesian-inference]",5,5,2,29,11,35,45,1673297,2,526160 10.5281/zenodo.13279,,2,dataset,,107,,,,,,,,24,99,107,24,99,106,44569537890,106,44569537890 10.5281/zenodo.13348,,2,software,https://github.com/iesiee/PVF,1,2,"{""R"": 18455}",GNU General Public License v2.0,1,3,[],1,1,42,1,1,42,44,28559,44,28559 10.5281/zenodo.13361,,2,software,https://github.com/CKrawczyk/densityplot,0,2,"{""Python"": 47856}",MIT License,1,2,[],1,0,30,0,0,30,30,0,30,0 10.5281/zenodo.1345235,10.5281/zenodo.598174,2,software,https://github.com/NeoGeographyToolkit/StereoPipeline,31,75,"{""C++"": 3705866, ""Python"": 1044469, ""M4"": 99052, ""CMake"": 53289, ""Makefile"": 48259, ""XSLT"": 41773, ""MATLAB"": 25700, ""Shell"": 17617, ""Perl"": 8080, ""Cuda"": 3235, ""C"": 850, ""GLSL"": 830}",Apache License 2.0,202,42,[],202,11,134,42,15,348,398,3219999154,154,2378225233 10.5281/zenodo.1345307,10.5281/zenodo.1217593,2,dataset,,102,,,,,,,,48,75,160,67,103,121,1063623072,85,753879733 10.5281/zenodo.13823,10.5281/zenodo.592492,2,software,https://github.com/smaret/thindisk,2,3,"{""Python"": 5397}",GNU General Public License v3.0,4,2,[],4,2,56,4,3,64,122,40766,84,7840 10.5281/zenodo.13877,10.5281/zenodo.606832,2,dataset,,108,,,,,,,,9,49,222,60,370,457,33686188392,62,12983213984 10.5281/zenodo.13882,10.5281/zenodo.591453,2,software,https://github.com/oscarperpinan/meteoForecast,0,21,"{""R"": 39809}",GNU General Public License v3.0,40,7,[],40,0,25,2,2,68,71,342557,26,0 10.5281/zenodo.14071,,2,publication,,9,,,,,,,,9,38,9,9,38,38,13637295,38,13637295 10.5281/zenodo.1435831,10.5281/zenodo.1435025,2,software,https://github.com/gtrensch/RigorousNeuralNetworkSimulations,7,0,"{""Python"": 17076602, ""C++"": 115738, ""C"": 62457, ""Shell"": 1560, ""CMake"": 726}",GNU General Public License v2.0,0,1,[],0,5,16,15,10,26,48,65561757,29,30654477 10.5281/zenodo.1443581,10.5281/zenodo.1443580,2,software,,9,,,,,,,,4,28,9,4,28,34,991385,34,991385 10.5281/zenodo.14566,,2,software,https://github.com/pyeparse/pyeparse,0,8,"{""Python"": 120468, ""PowerShell"": 2988, ""Makefile"": 684}",Other,9,7,[],9,0,15,0,0,15,15,0,15,0 10.5281/zenodo.14941,,2,publication,,5,,,,,,,,5,18,5,5,18,20,25696750,20,25696750 10.5281/zenodo.153937,,2,software,https://github.com/F1000Research/GeneBreak,0,0,"{""R"": 72262}",,0,1,[],0,0,5,0,0,5,5,0,5,0 10.5281/zenodo.153978,,2,software,https://github.com/hsosik/ifcb-analysis,2,6,"{""MATLAB"": 3152600, ""Python"": 140224, ""HTML"": 39158, ""Limbo"": 27046, ""JavaScript"": 24942, ""TeX"": 14370, ""CSS"": 6604, ""Shell"": 5611, ""XSLT"": 2600, ""M"": 2540, ""Objective-C"": 1100}",Other,12,11,[],12,2,50,2,2,50,54,11037648,54,11037648 10.5281/zenodo.154113,10.5281/zenodo.595824,2,software,https://github.com/IstvanZachar/Neurodynamics,0,0,"{""Mathematica"": 1177239, ""C"": 80144, ""Shell"": 163}",GNU General Public License v3.0,0,1,[],0,0,10,0,0,10,10,0,10,0 10.5281/zenodo.154354,10.5281/zenodo.646531,2,dataset,,0,,,,,,,,0,13,3,3,63,72,148358232,14,0 10.5281/zenodo.154533,,2,software,https://github.com/jswoboda/GeoDataPython,0,2,"{""Python"": 143153, ""Shell"": 317}",MIT License,4,5,[],4,0,5,0,0,5,5,0,5,0 10.5281/zenodo.154536,,2,software,https://github.com/jswoboda/GeoDataMATLAB,0,0,"{""MATLAB"": 143856}",MIT License,0,4,[],0,0,6,0,0,6,6,0,6,0 10.5281/zenodo.154647,,2,publication,,42,,,,,,,,39,268,42,39,268,271,63880278,271,63880278 10.5281/zenodo.15524,10.5281/zenodo.592195,2,software,https://github.com/torognes/vsearch,2,70,"{""C++"": 960413, ""C"": 119644, ""M4"": 2958, ""Makefile"": 2803, ""Shell"": 39}",Other,328,46,"[metabarcoding, metagenomics, chimera, clustering, search, bioinformatics, fastq, fasta, microbiome, amplicon, sequence-alignment]",328,2,177,9,7,525,577,470531915,183,232955962 10.5281/zenodo.15681,10.5281/zenodo.605835,2,software,,3,,,,,,,,3,104,3,3,104,112,1604748,112,1604748 10.5281/zenodo.159007,,2,software,,2,,,,,,,,2,22,2,2,22,22,19503216,22,19503216 10.5281/zenodo.159271,,2,software,https://github.com/F1000Research/Network-Randomizer,1,0,"{""Java"": 193342}",Apache License 2.0,0,1,[],0,1,165,1,1,165,253,306415,253,306415 10.5281/zenodo.159680,,2,software,,0,,,,,,,,0,29,0,0,29,33,0,33,0 10.5281/zenodo.15981,10.5281/zenodo.593263,2,software,https://github.com/pederpansen/dune-ax1,0,0,"{""C++"": 3871834, ""Makefile"": 98350, ""Jupyter Notebook"": 43790, ""Shell"": 16072, ""Python"": 8501, ""Gnuplot"": 6741, ""M4"": 3155, ""Roff"": 1673, ""Dockerfile"": 628, ""M"": 307}","BSD 3-Clause ""New"" or ""Revised"" License",0,1,[],0,0,234,2,1,235,241,14052356,237,0 10.5281/zenodo.15991,,2,software,https://github.com/eblur/dust,18,5,"{""Python"": 177015, ""Jupyter Notebook"": 42995}",,5,2,[],5,17,921,18,17,921,1007,19657260,1007,19657260 10.5281/zenodo.16005,,2,software,https://github.com/chumo/Schroedinger_SOLVER-IgorPRO,5,0,"{""IGOR Pro"": 14544}",Eclipse Public License 1.0,3,2,[],3,5,47,5,5,47,52,373000,52,373000 10.5281/zenodo.160118,,2,dataset,,100,,,,,,,,51,178,100,51,178,190,13314750460,190,13314750460 10.5281/zenodo.160344,,2,dataset,,24,,,,,,,,18,62,24,18,62,64,289386433,64,289386433 10.5281/zenodo.160351,10.5281/zenodo.596163,2,software,https://github.com/LozRiviera/COMPASS_paper,7,0,"{""Jupyter Notebook"": 3654915, ""Processing"": 5096, ""Arduino"": 4222}",Other,0,1,[],0,5,32,14,11,79,90,92112634,32,45490928 10.5281/zenodo.160743,,2,dataset,,5,,,,,,,,5,13,5,5,13,15,10065235,15,10065235 10.5281/zenodo.160744,,2,publication,,2,,,,,,,,2,9,2,2,9,10,1083520,10,1083520 10.5281/zenodo.161323,,2,publication,,42,,,,,,,,39,45,42,39,45,45,845668026,45,845668026 10.5281/zenodo.161532,,2,publication,,12,,,,,,,,11,31,12,11,31,32,59052,32,59052 10.5281/zenodo.16166,10.5281/zenodo.593396,2,software,https://github.com/sjvs/paleolatitude,4,1,"{""C++"": 120088, ""Makefile"": 12584, ""Shell"": 2689, ""C"": 830}",GNU Lesser General Public License v3.0,0,1,[],0,4,42,4,4,58,59,846052,42,846052 10.5281/zenodo.16178,10.5281/zenodo.593306,2,software,https://github.com/florisvanvugt/taparduino,8,0,"{""C"": 68912, ""Python"": 19803}",GNU General Public License v3.0,0,4,[],0,8,59,10,9,71,76,7528594,61,3822056 10.5281/zenodo.162058,10.5281/zenodo.596351,2,software,https://github.com/landlab/pub_adams_etal_gmd,4,0,"{""Python"": 9531}",MIT License,1,8,[],1,3,39,4,3,41,42,65614764,40,65614764 10.5281/zenodo.16248,,2,software,,2,,,,,,,,2,32,2,2,32,32,31860068,32,31860068 10.5281/zenodo.163202,10.5281/zenodo.596631,2,software,https://github.com/WMD-group/MacroDensity,13,26,"{""Jupyter Notebook"": 376850, ""Python"": 53639}",MIT License,37,5,"[electrostatic-potential, ionisation-potential, workfunction, density-functional-theory, vasp, semiconductor-physics]",37,10,40,21,17,72,84,2234597676,45,161756556 10.5281/zenodo.163609,10.5281/zenodo.591684,2,software,https://github.com/ComputationalRadiationPhysics/libSplash,0,14,"{""C++"": 594013, ""Python"": 23082, ""CMake"": 20990, ""Shell"": 4732, ""C"": 2417}",GNU Lesser General Public License v3.0,12,4,[],12,0,2,1,1,37,44,744908,2,0 10.5281/zenodo.163737,,2,software,https://github.com/calacademy-research/GItaxidIsVert,2,2,"{""Python"": 7777}",MIT License,0,2,[],0,2,14,2,2,14,16,13018,16,13018 10.5281/zenodo.163963,,2,publication,,39,,,,,,,,38,284,39,38,284,292,148527093,292,148527093 10.5281/zenodo.165123,,2,publication,,80,,,,,,,,74,106,80,74,106,109,76622000,109,76622000 10.5281/zenodo.165134,,2,software,,2,,,,,,,,2,25,2,2,25,25,45596808,25,45596808 10.5281/zenodo.16557,10.5281/zenodo.593145,2,software,https://github.com/FCP-INDI/C-PAC,7,73,"{""Python"": 1996120, ""HTML"": 446813, ""JavaScript"": 182402, ""Shell"": 59212, ""CSS"": 39802, ""Gherkin"": 10100, ""Dockerfile"": 5652}","BSD 3-Clause ""New"" or ""Revised"" License",91,23,[],91,4,87,113,21,220,234,2836234784,87,123557273 10.5281/zenodo.16565,,2,dataset,,4245,,,,,,,,548,290,4245,548,290,307,535067945753,307,535067945753 10.5281/zenodo.165979,,2,presentation,,22,,,,,,,,20,13,22,20,13,14,124294522,14,124294522 10.5281/zenodo.166564,,2,software,https://github.com/harperic/freud,2,2,"{""C++"": 808804, ""Python"": 452754, ""CMake"": 28126, ""C"": 20813, ""Perl"": 3188}",Other,2,0,[],2,2,235,2,2,235,261,3848988,261,3848988 10.5281/zenodo.16671,,2,software,,0,,,,,,,,0,15,0,0,15,15,0,15,0 10.5281/zenodo.166725,10.5281/zenodo.596759,2,software,https://github.com/weecology/sad-comparison,8,5,"{""Python"": 122613, ""TeX"": 106923, ""R"": 15516, ""Makefile"": 1755}",,4,5,[],4,8,80,8,8,82,90,269576496,88,269576496 10.5281/zenodo.167330,,2,software,https://github.com/ErasmusMC-Bioinformatics/galaxytools-emc,1,2,"{""Python"": 42869, ""Shell"": 2194, ""R"": 605}",MIT License,3,3,[],3,1,24,1,1,24,28,17295,28,17295 10.5281/zenodo.16767,10.5281/zenodo.592875,2,software,https://github.com/statnet/EpiModel,3,18,"{""R"": 727828, ""C"": 1822, ""CSS"": 1254}",GNU General Public License v3.0,72,21,"[epidemics, agent-based-modeling, network-graph, epidemiology, infectious-diseases]",72,3,42,43,11,131,146,11585576,43,695997 10.5281/zenodo.168074,10.5281/zenodo.595175,2,software,https://github.com/spunt/bspmview,26,15,"{""MATLAB"": 857766, ""HTML"": 31274, ""Java"": 1053}",,30,5,[],30,23,393,30,25,414,454,1539476814,431,1334214466 10.5281/zenodo.168087,,2,software,https://github.com/PsychoinformaticsLab/nipymc,1,4,"{""Shell"": 1437658, ""Jupyter Notebook"": 1347398, ""Python"": 98908, ""R"": 8292}",MIT License,30,5,[],30,1,25,1,1,25,25,28910663,25,28910663 10.5281/zenodo.169751,,2,publication,,0,,,,,,,,0,6,0,0,6,6,0,6,0 10.5281/zenodo.17158,,2,dataset,,0,,,,,,,,0,70,0,0,70,78,0,78,0 10.5281/zenodo.17418,,2,dataset,,14,,,,,,,,10,45,14,10,45,51,2414282,51,2414282 10.5281/zenodo.17593,10.5281/zenodo.593587,2,software,https://github.com/AlejandroRuete/IgnoranceMaps,0,2,"{""R"": 20747, ""HTML"": 4868, ""CSS"": 1774}",GNU General Public License v3.0,3,5,[],3,0,34,1,1,48,49,408474,34,0 10.5281/zenodo.17752,,2,publication,,547,,,,,,,,501,244,547,501,244,254,28490629015,254,28490629015 10.5281/zenodo.17874,10.5281/zenodo.593453,2,software,https://github.com/radical-cybertools/radical.synapse,0,0,"{""Python"": 174066, ""Gnuplot"": 48001, ""C"": 28938, ""Shell"": 1167, ""Makefile"": 36}",Other,4,18,[],4,0,13,0,0,20,21,0,14,0 10.5281/zenodo.17900,10.5281/zenodo.592291,2,software,https://github.com/aeantipov/pomerol,2,14,"{""C++"": 517280, ""CMake"": 31973, ""Python"": 1260}",GNU General Public License v2.0,16,11,"[exact-diagonalization, hubbard, greens-functions, pomerol, quantum, condensed-matter, physics, c-plus-plus]",16,2,221,2,2,240,266,548944,234,548944 10.5281/zenodo.179966,,2,publication,,0,,,,,,,,0,3,0,0,3,3,0,3,0 10.5281/zenodo.181058,,2,publication,,0,,,,,,,,0,29,0,0,29,34,0,34,0 10.5281/zenodo.18238,,2,software,,10,,,,,,,,9,151,10,9,151,160,466800,160,466800 10.5281/zenodo.183819,,2,software,https://github.com/EuropePMC/Biojs.Annotator,2,1,"{""JavaScript"": 166808, ""CSS"": 14521, ""Java"": 6128}",,8,1,[],8,2,46,2,2,46,46,40081442,46,40081442 10.5281/zenodo.18548,,2,software,https://github.com/aammd/precipitation.experiment.schedule,1,3,"{""HTML"": 295272, ""R"": 92665, ""TeX"": 13800, ""Shell"": 2251}",Other,0,6,[],0,1,51,1,1,51,52,27174423,52,27174423 10.5281/zenodo.18767,,2,software,https://github.com/psychoinformatics-de/paper-f1000_pandora_data,1,3,"{""TeX"": 52230, ""Python"": 6646, ""Makefile"": 4649, ""Shell"": 1021}",,4,7,[],4,1,58,1,1,58,58,1263737,58,1263737 10.5281/zenodo.18770,10.5281/zenodo.593732,2,software,https://github.com/hanke/gumpdata,2,4,"{""Python"": 82180, ""Shell"": 39269, ""Makefile"": 1610}",Other,10,3,[],10,2,44,2,2,51,52,1395334,44,1395334 10.5281/zenodo.187828,,2,publication,,0,,,,,,,,0,9,0,0,9,9,0,9,0 10.5281/zenodo.188391,,2,publication,,1,,,,,,,,1,15,1,1,15,17,1826539,17,1826539 10.5281/zenodo.18907,,2,software,https://github.com/krischer/hypoDDpy,10,20,"{""Python"": 82986}",,33,9,[],33,10,135,10,10,135,138,1288810,138,1288810 10.5281/zenodo.189503,,2,software,https://github.com/daler/erythroid-genes,2,1,"{""HTML"": 480128, ""Jupyter Notebook"": 188236}",MIT License,0,1,[],0,2,43,2,2,43,44,501744,44,501744 10.5281/zenodo.19113,,2,publication,,0,,,,,,,,0,16,0,0,16,16,0,16,0 10.5281/zenodo.191884,,2,dataset,,21,,,,,,,,11,71,21,11,71,79,24538,79,24538 10.5281/zenodo.192106,10.5281/zenodo.595754,2,software,https://github.com/rinde/RinSim,1,42,"{""Java"": 2753390, ""R"": 5988, ""Shell"": 4013}",Other,76,21,"[java, rinsim, simulator, logistics, agents, optimization, logistics-simulator, operational-research]",76,1,5,13,12,137,157,39403927,5,4178379 10.5281/zenodo.192386,,2,dataset,,45,,,,,,,,37,165,45,37,165,181,6129664875,181,6129664875 10.5281/zenodo.192388,,2,dataset,,19,,,,,,,,18,64,19,18,64,68,5674624721,68,5674624721 10.5281/zenodo.192390,,2,dataset,,24,,,,,,,,22,70,24,22,70,73,5509524528,73,5509524528 10.5281/zenodo.192391,,2,dataset,,19,,,,,,,,18,68,19,18,68,74,2053252290,74,2053252290 10.5281/zenodo.192398,,2,dataset,,21,,,,,,,,18,95,21,18,95,99,11466,99,11466 10.5281/zenodo.192400,,2,dataset,,8,,,,,,,,8,58,8,8,58,60,2248,60,2248 10.5281/zenodo.193184,,2,publication,,0,,,,,,,,0,4,0,0,4,4,0,4,0 10.5281/zenodo.19465,,2,software,https://github.com/F1000Research/PSFC,1,0,"{""Java"": 387230}",,0,1,[],0,1,31,1,1,31,33,968662,33,968662 10.5281/zenodo.194650,,2,publication,,0,,,,,,,,0,10,0,0,10,11,0,11,0 10.5281/zenodo.196488,,2,publication,,0,,,,,,,,0,133,0,0,133,149,0,149,0 10.5281/zenodo.19738,,2,publication,,1566,,,,,,,,1469,5549,1566,1469,5549,5668,3737116494,5668,3737116494 10.5281/zenodo.203295,,2,publication,,389,,,,,,,,363,1453,389,363,1453,1638,40101232,1638,40101232 10.5281/zenodo.20740,,2,dataset,,2,,,,,,,,2,93,2,2,93,93,954655286,93,954655286 10.5281/zenodo.21029,10.5281/zenodo.593947,2,software,https://github.com/josephryan/alien_index,1,1,"{""Perl"": 8603}",GNU General Public License v2.0,2,1,[],2,1,83,1,1,96,104,11826,86,11826 10.5281/zenodo.221095,,2,dataset,,1,,,,,,,,1,52,1,1,52,57,169925376,57,169925376 10.5281/zenodo.221367,,2,software,https://github.com/annayqho/TheCannon,2,13,"{""Python"": 616358, ""TeX"": 73358, ""Makefile"": 406, ""Shell"": 37}",MIT License,23,12,[],23,2,47,2,2,47,47,86312720,47,86312720 10.5281/zenodo.223009,,2,software,https://github.com/BSGOxford/Opossum,2,6,"{""Python"": 75272}",GNU General Public License v3.0,21,9,[],21,2,96,2,2,96,102,66458,102,66458 10.5281/zenodo.224125,10.5281/zenodo.597703,2,software,https://github.com/jason-weirather/AlignQC,1,8,"{""Python"": 228061, ""R"": 54818, ""CSS"": 2657, ""Shell"": 27}",Apache License 2.0,22,3,[],22,1,71,1,1,89,111,163447,82,163447 10.5281/zenodo.22826,,2,publication,,1210,,,,,,,,1070,2390,1210,1070,2390,2530,177859110,2530,177859110 10.5281/zenodo.229168,,2,dataset,,1,,,,,,,,1,25,1,1,25,25,24198540,25,24198540 10.5281/zenodo.229893,,2,software,https://github.com/shennanw/AR2,1,0,"{""MATLAB"": 192395}",GNU General Public License v3.0,0,1,[],0,1,31,1,1,31,31,74509,31,74509 10.5281/zenodo.23423,,2,publication,,11,,,,,,,,10,18,11,10,18,18,29921375,18,29921375 10.5281/zenodo.23429,,2,publication,,16,,,,,,,,15,27,16,15,27,27,77120368,27,77120368 10.5281/zenodo.23590,,2,publication,,99,,,,,,,,85,43,99,85,43,44,1845226251,44,1845226251 10.5281/zenodo.23658,,2,publication,,16,,,,,,,,14,26,16,14,26,26,388045856,26,388045856 10.5281/zenodo.23670,,2,publication,,,,,,,,,,,,,,,,,, 10.5281/zenodo.23671,,2,publication,,8,,,,,,,,8,13,8,8,13,13,19825624,13,19825624 10.5281/zenodo.23677,,2,publication,,6,,,,,,,,6,8,6,6,8,8,55364994,8,55364994 10.5281/zenodo.23682,,2,publication,,9,,,,,,,,8,13,9,8,13,13,70733547,13,70733547 10.5281/zenodo.23689,,2,publication,,8,,,,,,,,7,7,8,7,7,7,68613592,7,68613592 10.5281/zenodo.23697,,2,publication,,19,,,,,,,,19,15,19,19,15,15,121335330,15,121335330 10.5281/zenodo.237116,,2,dataset,,69,,,,,,,,35,171,69,35,171,184,1171318122,184,1171318122 10.5281/zenodo.23739,,2,publication,,10,,,,,,,,9,9,10,9,9,10,61150390,10,61150390 10.5281/zenodo.238778,,2,publication,,9,,,,,,,,9,8,9,9,8,9,237707946,9,237707946 10.5281/zenodo.23887,,2,publication,,71,,,,,,,,60,68,71,60,68,71,819078294,71,819078294 10.5281/zenodo.248351,10.5281/zenodo.592536,2,software,https://github.com/matplotlib/matplotlib,5,4186,"{""Python"": 6382630, ""C++"": 627375, ""Jupyter Notebook"": 94988, ""Objective-C"": 81696, ""JavaScript"": 24731, ""C"": 22456, ""CSS"": 5382, ""HTML"": 4046, ""Shell"": 2072, ""Batchfile"": 942, ""TeX"": 326}",,9477,534,[],9477,5,291,243,69,4228,5303,11040266055,297,272774535 10.5281/zenodo.249090,,2,software,https://github.com/esbg/kinconform,0,1,"{""OpenEdge ABL"": 234245, ""Smarty"": 124611, ""Python"": 6005, ""Makefile"": 238}",,1,2,[],1,0,8,0,0,8,10,0,10,0 10.5281/zenodo.250258,10.5281/zenodo.594916,2,software,https://github.com/stevertaylor/NX01,1,4,"{""Jupyter Notebook"": 2295724, ""Python"": 795817}",MIT License,5,4,[],5,1,38,1,1,51,54,2271291,41,2271291 10.5281/zenodo.25216,,2,publication,,5,,,,,,,,4,10,5,4,10,11,7409375,11,7409375 10.5281/zenodo.25290,,2,publication,,47,,,,,,,,32,41,47,32,41,43,727769385,43,727769385 10.5281/zenodo.25708,,2,publication,,10,,,,,,,,10,10,10,10,10,10,7570060,10,7570060 10.5281/zenodo.2576189,10.5281/zenodo.597466,2,software,https://github.com/MosquitoAlert/Data,14,0,{},Other,0,0,[],0,13,1,139818,593,416,823,183590953065,1,28283094 10.5281/zenodo.258084,,2,publication,,4,,,,,,,,4,49,4,4,49,64,2443516,64,2443516 10.5281/zenodo.260230,,2,software,https://github.com/bluehood/tdataframe,9,2,"{""C++"": 109003, ""Jupyter Notebook"": 39058, ""C"": 5117, ""Shell"": 1177, ""Makefile"": 590}",GNU Lesser General Public License v3.0,1,4,[],1,9,325,9,9,325,352,653490,352,653490 10.5281/zenodo.26334,,2,publication,,24,,,,,,,,22,28,24,22,28,30,383776608,30,383776608 10.5281/zenodo.266673,,2,software,,0,,,,,,,,0,18,0,0,18,18,0,18,0 10.5281/zenodo.26795,,2,publication,,5,,,,,,,,5,7,5,5,7,7,3597280,7,3597280 10.5281/zenodo.268049,,2,software,https://github.com/MichaelDAlbrow/pyDIA,1,2,"{""Python"": 273396, ""C"": 96740, ""Makefile"": 811}",MIT License,7,0,[],7,1,76,1,1,76,86,65045366,86,65045366 10.5281/zenodo.27242,10.5281/zenodo.593867,2,software,https://github.com/c-h-david/rapid,0,14,"{""Fortran"": 453530, ""Shell"": 325164, ""Makefile"": 11280, ""Dockerfile"": 3724}",Other,40,10,[],40,0,35,18,13,179,239,1932148,38,0 10.5281/zenodo.27357,10.5281/zenodo.593839,2,software,https://github.com/sbussmann/uvmcmcfit,0,4,"{""Python"": 167789}",Other,5,5,[],5,0,16,0,0,18,18,0,16,0 10.5281/zenodo.28025,10.5281/zenodo.592838,2,software,https://github.com/hyperspy/hyperspy,12,114,"{""Python"": 4216839, ""Jupyter Notebook"": 100688, ""Batchfile"": 103, ""C"": 29}",GNU General Public License v3.0,201,24,"[python, data-visualization, data-analysis, multi-dimensional]",201,9,105,242,81,2653,3587,8969539634,106,92419104 10.5281/zenodo.290682,10.5281/zenodo.597221,2,software,https://github.com/lwtnn/lwtnn,9,29,"{""C++"": 113782, ""Python"": 69483, ""Shell"": 35950, ""CMake"": 12713, ""Makefile"": 3074}",MIT License,68,7,[],68,5,99,99,15,387,443,8345701,105,494136 10.5281/zenodo.292635,,2,software,https://github.com/peterstangl/svg2data,1,0,"{""Python"": 64401}",GNU General Public License v2.0,8,4,"[svg, plot, pdf, extract-data, data-extraction]",8,1,19,1,1,19,19,23587,19,23587 10.5281/zenodo.293759,,2,publication,,8,,,,,,,,8,46,8,8,46,49,3510384,49,3510384 10.5281/zenodo.30310,,2,publication,,4,,,,,,,,4,5,4,4,5,5,848504,5,848504 10.5281/zenodo.30587,,2,software,https://github.com/david-mateo/swarming-spp,1,2,"{""C++"": 76278, ""C"": 1470, ""Makefile"": 921}",GNU General Public License v3.0,9,1,[],9,1,15,1,1,15,15,52928,15,52928 10.5281/zenodo.31286,,2,software,https://github.com/MathieuLeocmach/colloids,2,2,"{""Jupyter Notebook"": 3230480, ""C++"": 2922325, ""HTML"": 1146585, ""Python"": 397535, ""Shell"": 328349, ""Makefile"": 80398, ""M4"": 3126}",GNU General Public License v3.0,5,3,[],5,2,60,2,2,60,63,75980922,63,75980922 10.5281/zenodo.31443,10.5281/zenodo.592195,2,software,https://github.com/torognes/vsearch,1,70,"{""C++"": 960413, ""C"": 119644, ""M4"": 2958, ""Makefile"": 2803, ""Shell"": 39}",Other,328,46,"[metabarcoding, metagenomics, chimera, clustering, search, bioinformatics, fastq, fasta, microbiome, amplicon, sequence-alignment]",328,1,78,9,7,525,577,470531915,80,264360 10.5281/zenodo.32033,10.5281/zenodo.593226,2,software,https://github.com/karrolcia/ACI_monitoring,0,0,"{""MATLAB"": 62315}",GNU General Public License v2.0,1,2,[],1,0,67,1,1,69,72,12577132,68,0 10.5281/zenodo.321957,10.5281/zenodo.597734,2,software,https://github.com/scottgigante/picopore,0,4,"{""Python"": 47023}",GNU General Public License v3.0,30,4,[],30,0,32,0,0,36,37,0,32,0 10.5281/zenodo.322459,,2,software,https://github.com/ydluo/qdyn,19,8,"{""Fortran"": 376128, ""MATLAB"": 90708, ""Python"": 48742, ""Perl"": 3499, ""Shell"": 3423, ""Makefile"": 2051}",GNU General Public License v3.0,18,9,[],18,18,195,19,18,195,203,110620128,203,110620128 10.5281/zenodo.322661,,2,publication,,34,,,,,,,,32,49,34,32,49,52,57939604,52,57939604 10.5281/zenodo.33715,,2,publication,,89,,,,,,,,89,88,89,89,88,88,302965968,88,302965968 10.5281/zenodo.34043,,2,publication,,74,,,,,,,,63,109,74,63,109,118,185089836,118,185089836 10.5281/zenodo.34341,,2,publication,,28,,,,,,,,26,27,28,26,27,28,92987104,28,92987104 10.5281/zenodo.344623,10.5281/zenodo.592692,2,software,https://github.com/geodynamics/aspect,4,111,"{""Gnuplot"": 28266313, ""C++"": 7443202, ""CMake"": 284536, ""Shell"": 100990, ""Makefile"": 56633, ""Python"": 38045, ""Jupyter Notebook"": 15969, ""Groovy"": 5602, ""MATLAB"": 4703, ""Dockerfile"": 4576, ""Perl"": 3155, ""Roff"": 367}",Other,76,34,"[c-plus-plus, geoscience, mantle-convection, cig, geodynamics, high-performance-computing]",76,3,42,18,9,240,276,216848050,42,37787420 10.5281/zenodo.344977,,2,publication,,12,,,,,,,,12,25,12,12,25,25,4017480,25,4017480 10.5281/zenodo.346005,10.5281/zenodo.591746,2,software,https://github.com/ComputationalRadiationPhysics/picongpu,2,141,"{""C++"": 3429595, ""Shell"": 249722, ""Python"": 151958, ""CMake"": 63536, ""Dockerfile"": 4852, ""Awk"": 2245, ""Gnuplot"": 1136}",Other,350,49,"[laser, plasma, physics, gpu, physics-simulation, gpu-computing, particle-accelerator, particle-in-cell, pic, research]",350,1,6,48,11,342,429,150452842,6,4892660 10.5281/zenodo.34975,10.5281/zenodo.591311,2,software,https://github.com/stakahama/aprl-ssp,0,1,"{""Python"": 58276, ""R"": 9216}",GNU General Public License v3.0,0,1,[],0,0,12,0,0,23,26,0,12,0 10.5281/zenodo.35388,,2,publication,,33,,,,,,,,30,163,33,30,163,163,290733960,163,290733960 10.5281/zenodo.35401,,2,publication,,68,,,,,,,,67,128,68,67,128,130,18941876,130,18941876 10.5281/zenodo.376618,,2,software,,4,,,,,,,,3,62,4,3,62,63,8784,63,8784 10.5281/zenodo.376621,,2,software,https://github.com/peterkirton/permutations,16,2,"{""Python"": 29356}",GNU General Public License v3.0,1,0,[],1,16,112,16,16,112,119,379776,119,379776 10.5281/zenodo.376982,10.5281/zenodo.594191,2,software,https://github.com/Parallel-in-Time/pySDC,2,9,"{""Python"": 1733889, ""Shell"": 5555}","BSD 2-Clause ""Simplified"" License",10,10,"[parallel-in-time, python, iterative-methods, parallel-computing, partial-differential-equations, ordinary-differential-equations, collocation-method, multigrid, pfasst, spectral-deferred-corrections]",10,1,0,24,7,57,77,43119494,0,4329434 10.5281/zenodo.377036,,2,publication,,93,,,,,,,,45,179,93,45,179,188,1219435893,188,1219435893 10.5281/zenodo.377047,10.5281/zenodo.597892,2,software,,0,,,,,,,,0,21,1,1,30,33,13572194,21,0 10.5281/zenodo.400708,,2,software,https://github.com/lukedeo/adversarial-jets,3,10,"{""Jupyter Notebook"": 673959, ""Python"": 41006, ""Makefile"": 517}",Other,39,5,"[deep-learning, machine-learning, high-energy-physics, hep, physics, physics-simulation, cern, generative-adversarial-network, gan]",39,3,51,3,3,51,54,1442370,54,1442370 10.5281/zenodo.400748,,2,software,https://github.com/Trovemaster/exocross,0,3,"{""Fortran"": 219137, ""Makefile"": 1487, ""Batchfile"": 234, ""C++"": 175}",MIT License,2,1,[],2,0,11,0,0,11,11,0,11,0 10.5281/zenodo.437867,,2,publication,,13,,,,,,,,13,8,13,13,8,8,53719926,8,53719926 10.5281/zenodo.438024,,2,dataset,,120,,,,,,,,82,209,120,82,209,224,8211830,224,8211830 10.5281/zenodo.438045,,2,publication,,289,,,,,,,,273,530,289,273,530,574,21653614,574,21653614 10.5281/zenodo.438138,10.5281/zenodo.792935,2,software,,6,,,,,,,,2,145,6,2,145,179,472082000,179,472082000 10.5281/zenodo.438726,10.5281/zenodo.640645,2,publication,,54,,,,,,,,49,54,517,394,579,677,5592579829,57,592407324 10.5281/zenodo.439488,,2,software,,1,,,,,,,,1,40,1,1,40,40,10539427,40,10539427 10.5281/zenodo.439534,,2,software,https://github.com/daler/chromhmm-enhancers-umel,2,1,"{""Python"": 36695}",MIT License,2,1,[],2,2,34,2,2,34,35,2053826,35,2053826 10.5281/zenodo.45516,,2,software,https://github.com/dhimmel/delays,9,2,"{""Jupyter Notebook"": 310513}",Creative Commons Attribution 4.0 International,8,2,"[publishing, delays, publishing-delays, science, pubmed, satoshi-village]",8,9,505,9,9,505,601,5789506320,601,5789506320 10.5281/zenodo.45602,,2,software,https://github.com/hpparvi/PyDE,0,4,"{""Python"": 16070}",GNU General Public License v2.0,12,3,"[python, optimization, minimization, differential-evolution, global-optimization]",12,0,37,0,0,37,40,0,40,0 10.5281/zenodo.46287,,2,publication,,19,,,,,,,,18,27,19,18,27,27,68947010,27,68947010 10.5281/zenodo.46569,10.5281/zenodo.594531,2,software,https://github.com/dnicholson/gas_toolbox,1,0,"{""MATLAB"": 123482}",Other,0,2,[],0,1,15,6,6,62,70,1406942,15,231675 10.5281/zenodo.466050,,2,software,https://github.com/TGAC/brassica,2,4,"{""Ruby"": 1098205, ""HTML"": 128491, ""CoffeeScript"": 62086, ""CSS"": 26163, ""JavaScript"": 5410, ""R"": 2643}",GNU General Public License v3.0,5,8,[],5,2,32,2,2,32,33,27077202,33,27077202 10.5281/zenodo.46737,,2,software,,11,,,,,,,,11,83,11,11,83,84,63713078,84,63713078 10.5281/zenodo.46793,,2,dataset,,2,,,,,,,,2,41,2,2,41,42,2312652097,42,2312652097 10.5281/zenodo.46897,10.5281/zenodo.592838,2,software,https://github.com/hyperspy/hyperspy,8,114,"{""Python"": 4216839, ""Jupyter Notebook"": 100688, ""Batchfile"": 103, ""C"": 29}",GNU General Public License v3.0,201,24,"[python, data-visualization, data-analysis, multi-dimensional]",201,5,45,242,81,2653,3587,8969539634,45,85158120 10.5281/zenodo.46912,,2,software,,2,,,,,,,,2,49,2,2,49,51,32086072,51,32086072 10.5281/zenodo.472493,,2,dataset,,29,,,,,,,,23,254,29,23,254,263,11438597660,263,11438597660 10.5281/zenodo.47528,10.5281/zenodo.594879,2,software,https://github.com/azag0/mbd,7,3,"{""Fortran"": 251181, ""Python"": 53574, ""CMake"": 5887, ""Makefile"": 5221, ""C"": 2351, ""Shell"": 1554}",Mozilla Public License 2.0,7,2,[],7,7,46,11,9,57,66,1680949,48,1017765 10.5281/zenodo.47889,,2,software,https://github.com/munazzaalam/PHEW,39,3,"{""Python"": 12489}",MIT License,0,4,[],0,38,293,39,38,293,304,265083,304,265083 10.5281/zenodo.48543,10.5281/zenodo.594511,2,software,https://github.com/mjskay/ARTool,0,1,"{""R"": 68204}",,16,2,[],16,0,24,6,4,119,145,375084,24,0 10.5281/zenodo.48545,10.5281/zenodo.595859,2,software,https://github.com/msmbuilder/msmbuilder,1,65,"{""Python"": 1081940, ""C"": 96800, ""C++"": 60420, ""Shell"": 2815, ""HTML"": 1194, ""Batchfile"": 47}",GNU Lesser General Public License v2.1,91,24,"[molecular-dynamics, python, msmbuilder, dimensionality-reduction, hmm, feature-extraction, tica, pca, markov-model, clustering, analysis]",91,1,55,1,1,99,100,1114691,56,1114691 10.5281/zenodo.48735,,2,software,,19,,,,,,,,17,119,19,17,119,134,68599804,134,68599804 10.5281/zenodo.49422,10.5281/zenodo.591850,2,software,https://github.com/turbinesFoam/turbinesFoam,3,29,"{""C++"": 235174, ""C"": 200667, ""Python"": 31249, ""Shell"": 8125}",GNU General Public License v3.0,28,14,"[openfoam, turbines, airfoils, blade-element, actuator-line, wind-energy]",28,2,70,30,9,189,202,6889093,71,744582 10.5281/zenodo.49572,,2,software,https://github.com/albz/Architect,1,4,"{""Fortran"": 430928, ""Python"": 68343, ""MATLAB"": 29909, ""Makefile"": 17386, ""C++"": 10230, ""C"": 5767, ""R"": 1878}",GNU General Public License v3.0,7,10,[],7,1,38,1,1,38,41,124215,41,124215 10.5281/zenodo.49583,,2,dataset,,468,,,,,,,,264,2392,468,264,2392,2572,4334613836,2572,4334613836 10.5281/zenodo.50217,,2,software,https://github.com/barklem/kaulakys,1,1,"{""IDL"": 67244, ""Prolog"": 9191}",GNU General Public License v3.0,0,2,[],0,1,15,1,1,15,18,21316,18,21316 10.5281/zenodo.50310,,2,software,https://github.com/katrikorpela/mare,3,5,"{""R"": 404951}",,6,4,[],6,3,64,3,3,64,69,32261208,69,32261208 10.5281/zenodo.51303,10.5281/zenodo.591804,2,software,https://github.com/m-labs/artiq,6,77,"{""Python"": 2525292, ""Rust"": 568513, ""Jupyter Notebook"": 24511, ""Assembly"": 10247, ""C"": 3527, ""Makefile"": 2111}",Other,182,33,"[python, science, physics, quantum-computing, rust, compiler, qt]",182,5,831,31,13,942,1060,101227197,908,17535330 10.5281/zenodo.51723,10.5281/zenodo.595153,2,software,https://github.com/magic-sph/magic,0,6,"{""Fortran"": 2410811, ""Python"": 604119, ""Makefile"": 25901, ""CMake"": 22877, ""Shell"": 18123, ""C"": 6318, ""C++"": 1333, ""Batchfile"": 1148}",,27,15,[],27,0,32,0,0,50,55,0,32,0 10.5281/zenodo.51879,10.5281/zenodo.595844,2,software,https://github.com/javimarlop/eHabpy,0,2,"{""Python"": 651708, ""R"": 51612, ""Shell"": 1996}",,3,2,[],3,0,32,0,0,45,46,0,32,0 10.5281/zenodo.53231,10.5281/zenodo.595307,2,software,https://github.com/jrcunning/kbayrecov2014,2,0,"{""R"": 50324}",,0,1,[],0,2,44,2,2,44,45,276264678,45,276264678 10.5281/zenodo.53761,,2,software,,0,,,,,,,,0,24,0,0,24,24,0,24,0 10.5281/zenodo.53940,10.5281/zenodo.635346,2,software,,7,,,,,,,,5,91,7,5,91,95,18753525,95,18753525 10.5281/zenodo.54004,10.5281/zenodo.592838,2,software,https://github.com/hyperspy/hyperspy,8,114,"{""Python"": 4216839, ""Jupyter Notebook"": 100688, ""Batchfile"": 103, ""C"": 29}",GNU General Public License v3.0,201,24,"[python, data-visualization, data-analysis, multi-dimensional]",201,5,39,242,81,2653,3587,8969539634,39,85724712 10.5281/zenodo.545654,10.5281/zenodo.598195,2,software,https://github.com/RamsinghLab/Arkas-RNASeq,7,,,,,,,,7,193,7,7,204,210,5020384649,196,5020384649 10.5281/zenodo.545682,,2,dataset,,60,,,,,,,,39,213,60,39,213,220,1960968083,220,1960968083 10.5281/zenodo.556195,10.5281/zenodo.593800,2,software,https://github.com/NCBI-Hackathons/PubRunner,0,7,"{""JavaScript"": 49674, ""Python"": 20288, ""CSS"": 13642, ""HTML"": 12236, ""PHP"": 9128, ""Shell"": 2284, ""R"": 1889}",MIT License,12,10,[],12,0,42,0,0,67,68,0,42,0 10.5281/zenodo.556966,10.5281/zenodo.596663,2,software,https://github.com/gringer/bioinfscripts,5,8,"{""Perl"": 345763, ""R"": 167798, ""Python"": 85094, ""HTML"": 82159, ""Java"": 20606, ""JavaScript"": 16917, ""OpenSCAD"": 11756, ""TeX"": 8801, ""Shell"": 6605, ""CSS"": 3302}",GNU General Public License v3.0,38,6,[],38,4,40,6,5,65,67,2045529,40,1497990 10.5281/zenodo.56148,,2,publication,,75,,,,,,,,67,121,75,67,121,127,44303100,127,44303100 10.5281/zenodo.56251,10.5281/zenodo.593238,2,software,https://github.com/msmbuilder/osprey,0,20,"{""Python"": 173313, ""Shell"": 4748, ""TeX"": 2620, ""Batchfile"": 51}",Apache License 2.0,61,13,"[python, scikit-learn, hyperparameter-optimization, models, cross-validation, machine-learning, optimization, pretty-logo]",61,0,30,2,1,49,52,620264,31,0 10.5281/zenodo.56702,10.5281/zenodo.591877,2,software,https://github.com/fiji/KymographBuilder,2,2,"{""Java"": 32036, ""Python"": 1187, ""Shell"": 121}",MIT License,2,3,[],2,2,84,6,6,103,121,6193370,102,2066164 10.5281/zenodo.56720,,2,publication,,76,,,,,,,,67,358,76,67,358,379,137416892,379,137416892 10.5281/zenodo.56875,,2,publication,,11,,,,,,,,11,20,11,11,20,20,52003061,20,52003061 10.5281/zenodo.570934,,2,publication,,4,,,,,,,,4,12,4,4,12,13,3880884,13,3880884 10.5281/zenodo.573261,,2,software,https://github.com/vortex-exoplanet/VIP,0,25,"{""Python"": 971131}",MIT License,37,14,"[data-processing, high-contrast-imaging, low-rank-approximation, image-processing, extrasolar-planets-disks, pca, mcmc]",37,0,36,0,0,36,36,0,36,0 10.5281/zenodo.57407,10.5281/zenodo.593723,2,software,https://github.com/DallasTrinkle/Onsager,0,1,"{""Python"": 647999, ""Perl"": 33646}",MIT License,4,4,[],4,0,11,6,5,92,100,6211493,12,0 10.5281/zenodo.57760,10.5281/zenodo.594590,2,software,https://github.com/earth2observe/water-resource-reanalysis-v1,1,0,"{""HTML"": 1284725, ""CSS"": 2438, ""JavaScript"": 1010}",,1,3,[],1,1,45,19,12,211,231,3127887352,49,177782766 10.5281/zenodo.57900,10.5281/zenodo.592808,2,software,https://github.com/ewels/clusterflow,1,20,"{""Perl"": 416701, ""Python"": 15987, ""HTML"": 13345, ""R"": 3751}",GNU General Public License v3.0,76,11,"[clusterflow, bioinformatics, pipeline, bioinfomatics-pipeline, perl]",76,1,63,1,1,70,76,1362405,68,1362405 10.5281/zenodo.580065,,2,publication,,56,,,,,,,,50,33,56,50,33,35,169467592,35,169467592 10.5281/zenodo.58063,10.5281/zenodo.595479,2,software,https://github.com/jvegh/EMPAthY86,0,0,{},GNU General Public License v3.0,1,2,[],1,0,3,0,0,5,5,0,3,0 10.5281/zenodo.581815,,2,software,https://github.com/farzadf58/FractionMapper,0,0,"{""Java"": 38085}",,0,1,[],0,0,6,0,0,6,6,0,6,0 10.5281/zenodo.582307,10.5281/zenodo.786605,2,software,https://github.com/FRESNA/PyPSA,5,111,"{""Python"": 293251, ""CSS"": 948, ""Makefile"": 202}",GNU General Public License v3.0,235,56,"[python, loadflow, optimisation, pyomo, energy-system, power-systems-analysis, optimal-power-flow]",235,5,126,68,54,755,800,114815825,126,2897210 10.5281/zenodo.59259,10.5281/zenodo.595889,2,software,https://github.com/rinde/pdptw-dataset-generator,2,4,"{""Java"": 52195}",Other,5,2,[],5,2,19,3,3,41,45,125373,19,84708 10.5281/zenodo.592845,10.5281/zenodo.592845,2,software,https://github.com/mwaskom/seaborn,100,988,"{""Python"": 899185, ""Makefile"": 357, ""Shell"": 143}","BSD 3-Clause ""New"" or ""Revised"" License",6193,240,[],6193,95,2253,179,167,7462,9202,69010672,2654,33448900 10.5281/zenodo.59293,10.5281/zenodo.592838,2,software,https://github.com/hyperspy/hyperspy,8,114,"{""Python"": 4216839, ""Jupyter Notebook"": 100688, ""Batchfile"": 103, ""C"": 29}",GNU General Public License v3.0,201,24,"[python, data-visualization, data-analysis, multi-dimensional]",201,5,37,242,81,2653,3587,8969539634,39,163661176 10.5281/zenodo.592960,10.5281/zenodo.592960,2,software,https://github.com/mrirecon/bart,45,75,"{""C"": 1702441, ""C++"": 1095810, ""CMake"": 211571, ""Cuda"": 99259, ""Makefile"": 74530, ""Python"": 32737, ""Shell"": 11383, ""MATLAB"": 6886}","BSD 3-Clause ""New"" or ""Revised"" License",89,37,"[computational-imaging, mri, iterative-methods, compressed-sensing, bart-toolbox]",89,45,290,109,95,998,1109,75055696,342,36503730 10.5281/zenodo.595041,10.5281/zenodo.595041,2,software,https://github.com/simpway/HDLC-ICEC,9,0,{},GNU General Public License v3.0,3,1,[],3,9,49,9,9,58,66,1417257,56,1417257 10.5281/zenodo.59720,,2,software,https://github.com/rjleveque/KLslip-paper,1,0,"{""Jupyter Notebook"": 2160941, ""Python"": 118486}",,1,1,[],1,1,32,1,1,32,33,1600023,33,1600023 10.5281/zenodo.59937,,2,dataset,,17,,,,,,,,6,24,17,6,24,26,419066,26,419066 10.5281/zenodo.60023,,2,publication,,1,,,,,,,,1,3,1,1,3,3,671857,3,671857 10.5281/zenodo.60082,,2,software,https://github.com/bobbypaton/Kinisot,0,2,"{""Python"": 32432}",MIT License,3,1,"[kie, gaussian, quiver, frequencies, vibrational-scaling-factors]",3,0,76,0,0,76,84,0,84,0 10.5281/zenodo.60228,10.5281/zenodo.592502,2,software,https://github.com/ablejec/animatoR,0,0,"{""R"": 39190}",,0,2,[],0,0,10,0,0,14,15,0,11,0 10.5281/zenodo.60297,,2,software,https://github.com/jasonfrowe/Kepler,1,0,"{""Fortran"": 3045552, ""Jupyter Notebook"": 1133972, ""Makefile"": 52104, ""Shell"": 25486, ""Python"": 22865, ""Assembly"": 5024, ""M4"": 1126, ""Forth"": 12}",GNU General Public License v3.0,7,5,[],7,1,37,1,1,37,43,10681879,43,10681879 10.5281/zenodo.60313,,2,software,https://github.com/min110/mislabeled.samples.identification,0,0,"{""R"": 55162}",,1,2,[],1,0,53,0,0,53,73,0,73,0 10.5281/zenodo.60812,10.5281/zenodo.595753,2,software,,1,,,,,,,,1,31,1,1,33,34,1733490,31,1733490 10.5281/zenodo.61121,,2,publication,,10,,,,,,,,8,30,10,8,30,30,40151160,30,40151160 10.5281/zenodo.61236,10.5281/zenodo.595734,2,software,https://github.com/dh4gan/oberon,2,0,"{""C++"": 154380, ""Python"": 58591, ""C"": 13407, ""Makefile"": 1071}",GNU General Public License v3.0,1,1,"[climate, planet, star, astrophysics, simulation]",1,1,14,10,5,21,24,2197594,17,333026 10.5281/zenodo.61239,10.5281/zenodo.640949,2,publication,,31,,,,,,,,25,45,31,25,45,48,75245866,48,75245866 10.5281/zenodo.61355,,2,publication,,23,,,,,,,,21,139,23,21,139,139,35724934,139,35724934 10.5281/zenodo.61372,,2,software,,328,,,,,,,,309,1164,328,309,1164,1236,25026072,1236,25026072 10.5281/zenodo.61411,,2,publication,,17,,,,,,,,16,119,17,16,119,121,121235075,121,121235075 10.5281/zenodo.61418,,2,software,https://github.com/histogrammar/histogrammar-python,1,6,"{""Python"": 1579573, ""C++"": 26341, ""GAP"": 19235}",Apache License 2.0,26,9,[],26,1,40,1,1,40,40,39609816,40,39609816 10.5281/zenodo.61948,10.5281/zenodo.592536,2,software,https://github.com/matplotlib/matplotlib,12,4186,"{""Python"": 6382630, ""C++"": 627375, ""Jupyter Notebook"": 94988, ""Objective-C"": 81696, ""JavaScript"": 24731, ""C"": 22456, ""CSS"": 5382, ""HTML"": 4046, ""Shell"": 2072, ""Batchfile"": 942, ""TeX"": 326}",,9477,534,[],9477,9,188,243,69,4228,5303,11040266055,195,632058060 10.5281/zenodo.646576,10.5281/zenodo.646576,2,software,,1,,,,,,,,1,40,1,1,60,67,4039070,46,4039070 10.5281/zenodo.7706,,2,software,,10,,,,,,,,10,551,10,10,551,562,77470,562,77470 10.5281/zenodo.806818,10.5281/zenodo.806817,2,software,https://github.com/ThomasDOtto/IPA,0,1,"{""Perl"": 39743, ""Shell"": 7663}",GNU General Public License v3.0,2,1,[],2,0,33,0,0,33,36,0,36,0 10.5281/zenodo.808273,10.5281/zenodo.808272,2,dataset,,262,,,,,,,,238,2048,13047,2185,4986,5944,149903404167560,2339,1544385607148 10.5281/zenodo.810191,10.5281/zenodo.810191,2,publication,,33,,,,,,,,29,50,33,29,50,53,36708672,53,36708672 10.5281/zenodo.810199,10.5281/zenodo.810199,2,software,https://github.com/SHDShim/PeakPo,0,2,"{""Python"": 879698, ""HTML"": 559878, ""Jupyter Notebook"": 37753, ""Shell"": 70, ""Batchfile"": 69}",Apache License 2.0,5,3,"[xray-diffraction-analysis, pressure, temperature, python, crystallography, earth-science, physics]",5,0,15,16,9,156,180,144126698,19,0 10.5281/zenodo.810391,10.5281/zenodo.810391,2,software,https://github.com/astorfi/speechpy,30,97,"{""Python"": 33111, ""TeX"": 6631, ""Makefile"": 63}",Apache License 2.0,725,38,"[speech-recognition, python, feature-extraction, speechpy]",725,20,253,76,35,530,578,1533094631,270,809211600 10.5281/zenodo.814905,10.5281/zenodo.814904,2,software,https://github.com/binaypanda/RNAtor,1,1,"{""Java"": 57151, ""HTML"": 3911}",,3,2,[],3,1,22,1,1,22,22,891887,22,891887 10.5281/zenodo.817472,10.5281/zenodo.592960,2,software,https://github.com/mrirecon/bart,5,75,"{""C"": 1702441, ""C++"": 1095810, ""CMake"": 211571, ""Cuda"": 99259, ""Makefile"": 74530, ""Python"": 32737, ""Shell"": 11383, ""MATLAB"": 6886}","BSD 3-Clause ""New"" or ""Revised"" License",89,37,"[computational-imaging, mri, iterative-methods, compressed-sensing, bart-toolbox]",89,5,139,109,95,998,1109,75055696,144,2622360 10.5281/zenodo.821870,10.5281/zenodo.821864,2,software,https://github.com/bjmorgan/garnet-lgmc-data,2,0,"{""Jupyter Notebook"": 3660586, ""Python"": 6360, ""Ruby"": 1052, ""Shell"": 530}",Creative Commons Attribution Share Alike 4.0 International,1,1,[],1,2,44,16,14,146,240,68441017,44,8878268 10.5281/zenodo.822625,10.5281/zenodo.595698,2,software,https://github.com/mctools/mcpl,2,3,"{""C"": 3871500, ""Python"": 136861, ""C++"": 22340, ""CMake"": 7962, ""Makefile"": 2005}",Other,5,8,[],5,1,19,28,9,110,143,22019459,24,1505474 10.5281/zenodo.822859,10.5281/zenodo.604555,2,dataset,,87,,,,,,,,21,783,87,21,815,830,46755696806,794,46755696806 10.5281/zenodo.825675,10.5281/zenodo.825674,2,software,,5,,,,,,,,3,132,5,3,132,151,295719468,151,295719468 10.5281/zenodo.829949,10.5281/zenodo.829948,2,software,https://github.com/gscheler/GNN,1,,,,,,,,1,65,1,1,65,66,8125,66,8125 10.5281/zenodo.831438,10.5281/zenodo.831437,2,software,https://github.com/ropensci/rtimicropem,0,3,"{""R"": 48672, ""TeX"": 1223}",,9,5,"[rti-micropem, pm25, r, rstats, r-package, peer-reviewed]",9,0,7,1,1,14,15,1461096,7,0 10.5281/zenodo.832319,10.5281/zenodo.832318,2,software,https://github.com/poldracklab/CNP_task_analysis,1,1,"{""Jupyter Notebook"": 4978207, ""Python"": 38003, ""Shell"": 4629}",MIT License,1,9,[],1,1,33,1,1,33,35,23017,35,23017 10.5281/zenodo.833339,10.5281/zenodo.593786,2,software,https://github.com/adrn/gala,3,20,"{""Python"": 820779, ""C"": 102386, ""C++"": 15747, ""TeX"": 3702}",MIT License,52,9,"[python, dynamics, physics, astronomy, astrophysics, astropy-affiliated]",52,3,46,9,8,170,190,10330175,48,975675 10.5281/zenodo.836243,10.5281/zenodo.836242,2,software,,1,,,,,,,,1,6,1,1,6,6,42607,6,42607 10.5281/zenodo.837902,10.5281/zenodo.837901,2,dataset,,231,,,,,,,,132,642,285,159,806,887,361284615,672,298902549 10.5281/zenodo.838815,10.5281/zenodo.838814,2,dataset,,55,,,,,,,,42,172,55,42,172,174,226779628130,174,226779628130 10.5281/zenodo.838961,10.5281/zenodo.594221,2,software,https://github.com/rubenarslan/paternal_age_fitness,0,0,"{""HTML"": 7091234, ""JavaScript"": 83107, ""CSS"": 12498}",,1,1,[],1,0,24,0,0,44,46,0,26,0 10.5281/zenodo.845874,10.5281/zenodo.594213,2,software,https://github.com/thorstenwagner/ij-ridgedetection,52,12,"{""Java"": 311391, ""Shell"": 121}",GNU General Public License v2.0,16,11,"[detect-ridges, imagej, fiji]",16,45,452,65,54,712,787,6834433,511,5489120 10.5281/zenodo.848644,10.5281/zenodo.848643,2,software,,26,,,,,,,,9,38,26,9,38,40,19205363,40,19205363 10.5281/zenodo.861795,10.5281/zenodo.861794,2,software,,9,,,,,,,,9,51,9,9,51,51,54654771,51,54654771 10.5281/zenodo.883086,10.5281/zenodo.596388,2,software,https://github.com/ligo-cbc/pycbc,15,178,"{""Python"": 4701332, ""Shell"": 123435, ""HTML"": 19675, ""C"": 5058, ""JavaScript"": 4571, ""Dockerfile"": 3115, ""CSS"": 2861}",GNU General Public License v3.0,136,45,"[astronomy, physics, gravity, ligo, gravitational-waves, pycbc, analysis, python, black-hole, neutron-star, gwastro, virgo, signal-processing, open-science]",136,11,98,1068,53,1139,1438,12433542610,106,173230875 10.5281/zenodo.887935,10.5281/zenodo.887934,2,software,https://github.com/dib-lab/2017-tule-elk,1,0,"{""Shell"": 19353}",,3,17,[],3,1,39,1,1,39,53,5380177,53,5380177 10.5281/zenodo.889797,10.5281/zenodo.889797,2,dataset,,67,,,,,,,,63,914,248,226,1671,1863,162595140,976,45892856 10.5281/zenodo.889966,10.5281/zenodo.889965,2,software,https://github.com/dgerosa/gwdet,3,0,"{""Python"": 25854}",MIT License,4,3,[],4,3,58,3,3,58,66,152626584,66,152626584 10.5281/zenodo.893622,10.5281/zenodo.893619,2,software,https://github.com/TimLanglois/Habitat-annotation-of-forward-facing-benthic-imagery,6,8,"{""R"": 7402}",MIT License,0,1,[],0,6,29,6,6,31,33,53184636,30,53184636 10.5281/zenodo.896928,10.5281/zenodo.592752,2,software,https://github.com/kbarbary/sep,1,27,"{""C"": 184698, ""Python"": 110828, ""Makefile"": 2637, ""PowerShell"": 2353, ""Batchfile"": 1842, ""TeX"": 650}",,74,20,[],74,1,32,1,1,169,192,567245,38,567245 10.5281/zenodo.904324,10.5281/zenodo.904323,2,software,https://github.com/sacdallago/cellmap,1,1,"{""JavaScript"": 176494, ""HTML"": 129825, ""CSS"": 19132}",GNU General Public License v3.0,1,1,[],1,1,79,1,1,79,81,10570337,81,10570337 10.5281/zenodo.997157,10.5281/zenodo.997156,2,software,https://github.com/askhamwhat/modbh-paper,0,0,"{""Fortran"": 938871, ""Python"": 20232, ""Makefile"": 7841, ""Shell"": 1384}",,0,1,[],0,0,6,0,0,6,7,0,7,0 10.5281/zenodo.997256,10.5281/zenodo.593895,2,software,https://github.com/fredRos/pypmc,2,6,"{""Python"": 358152, ""Makefile"": 6999}",GNU General Public License v2.0,26,3,"[clustering, python, variational-bayes, population-monte-carlo, markov-chain, importance-sampling, cython]",26,1,4,8,4,25,25,1317303,4,325822 10.5281/zenodo.066862,,1,,,,,,,,,,,,,,,,,,, 10.5281/zenodo.1000098,10.5281/zenodo.808846,1,software,https://github.com/datalad/datalad,3,52,"{""Python"": 3167726, ""JavaScript"": 998039, ""Shell"": 36354, ""CSS"": 24510, ""HTML"": 15712, ""Makefile"": 1948, ""Roff"": 1555}",Other,151,16,"[python, git-annex, data-storage, dataset, usable]",151,3,59,102,23,257,304,142388402,62,3868071 10.5281/zenodo.10005,,1,software,https://github.com/nadiahpk/phenology-two-trait-migratory-bird,0,1,"{""MATLAB"": 74383, ""Python"": 2995, ""Gnuplot"": 2279}",The Unlicense,1,2,[],1,0,10,0,0,10,10,0,10,0 10.5281/zenodo.1001044,10.5281/zenodo.1001043,1,software,https://github.com/ashojaee/SLE_cytokines,0,0,"{""HTML"": 2695926}",,1,1,[],1,0,21,0,0,21,22,0,22,0 10.5281/zenodo.1001720,10.5281/zenodo.1001719,1,dataset,,19,,,,,,,,10,41,19,10,41,46,317427301,46,317427301 10.5281/zenodo.1001809,10.5281/zenodo.1001808,1,software,https://github.com/wolverton-research-group/nve,3,0,"{""Python"": 13460}",MIT License,0,7,[],0,3,35,3,3,35,37,17976,37,17976 10.5281/zenodo.10023,10.5281/zenodo.591863,1,software,https://github.com/henrikstranneheim/MIP,0,7,"{""Perl"": 6250829, ""R"": 8999, ""Shell"": 3255}",MIT License,16,8,"[clinical, variants, analysis, pipeline]",16,0,5,6,6,85,92,10474659,5,0 10.5281/zenodo.1002675,10.5281/zenodo.1002674,1,dataset,,325,,,,,,,,121,366,325,121,366,398,6170791771625,398,6170791771625 10.5281/zenodo.1002767,10.5281/zenodo.1002766,1,software,,0,,,,,,,,0,9,0,0,9,10,0,10,0 10.5281/zenodo.1003150,10.5281/zenodo.1003149,1,publication,https://github.com/citation-file-format/citation-file-format,29,5,{},Other,29,10,"[citation, citation-files, credit, attribution, research-software-engineering, software-sustainability, wssspe, format]",29,26,58,291,236,466,566,38316109,79,3824317 10.5281/zenodo.1003173,10.5281/zenodo.1003172,1,software,https://github.com/openalea/StructureAnalysis,0,4,"{""C++"": 8752258, ""Python"": 1467704, ""Haskell"": 31095, ""C"": 30666, ""Makefile"": 17927, ""Batchfile"": 15365, ""QMake"": 480, ""Shell"": 275, ""OpenEdge ABL"": 80}",,2,6,[],2,0,34,0,0,34,36,0,36,0 10.5281/zenodo.1003184,10.5281/zenodo.1003183,1,software,,1,,,,,,,,1,19,1,1,19,19,137271,19,137271 10.5281/zenodo.1003421,10.5281/zenodo.1003420,1,software,https://github.com/coq/coq,0,339,"{""OCaml"": 10188264, ""Coq"": 8122305, ""Shell"": 162052, ""TeX"": 120353, ""C"": 73417, ""Makefile"": 43208, ""Python"": 42203, ""Verilog"": 28528, ""NSIS"": 26177, ""Scheme"": 23322, 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10.5281/zenodo.1005175,10.5281/zenodo.1005174,1,dataset,,71,,,,,,,,52,67,71,52,67,75,14894735435,75,14894735435 10.5281/zenodo.1005942,10.5281/zenodo.1005941,1,software,https://github.com/clauswilke/proteinER,0,0,"{""Python"": 48115, ""HyPhy"": 4368, ""R"": 1178}",MIT License,5,5,[],5,0,24,2,2,60,62,1038000,25,0 10.5281/zenodo.1006724,10.5281/zenodo.596385,1,software,https://github.com/alightner/framingdata2017,0,0,"{""R"": 32216}",,0,1,[],0,0,10,0,0,15,15,0,10,0 10.5281/zenodo.1006726,10.5281/zenodo.1006725,1,software,https://github.com/alightner/dataAMT2017,0,0,"{""R"": 9847}",,0,1,[],0,0,97,0,0,97,97,0,97,0 10.5281/zenodo.1006730,10.5281/zenodo.1006729,1,software,https://github.com/alightner/RSOS_RR_framing,0,0,"{""HTML"": 3417687, ""TeX"": 293438, ""R"": 23343}",,0,1,[],0,0,98,0,0,98,98,0,98,0 10.5281/zenodo.10068,10.5281/zenodo.592037,1,software,https://github.com/ITensor/ITensor,0,100,"{""C++"": 2115672, ""Makefile"": 21733, ""C"": 5834, ""Groovy"": 1786}",Apache License 2.0,174,32,"[tensors, physics, chemistry, tensor-decomposition]",174,0,22,7,7,225,259,3000140,23,0 10.5281/zenodo.1007784,10.5281/zenodo.1007783,1,software,https://github.com/nuson/DSSon,1,0,"{""MATLAB"": 41929, ""Python"": 2139}",,1,1,[],1,1,10,1,1,10,11,40347986,11,40347986 10.5281/zenodo.1008754,10.5281/zenodo.1008753,1,software,,2,,,,,,,,2,24,2,2,24,25,155682078,25,155682078 10.5281/zenodo.1009056,10.5281/zenodo.999376,1,software,https://github.com/EIT-team/Load_data,0,0,"{""MATLAB"": 3595905, ""C++"": 206989, ""M"": 150862, ""HTML"": 21541, ""C"": 15311, ""Makefile"": 9345, ""TeX"": 5817}",GNU General Public License v3.0,3,11,"[electrical-impedance-tomography, eit, biomedical-engineering, scousetom, demodulation]",3,0,11,12,8,34,37,1590887532,11,0 10.5281/zenodo.1009061,10.5281/zenodo.592301,1,software,https://github.com/EIT-team/ScouseTom,8,1,"{""C++"": 240398, ""MATLAB"": 109627, ""AGS Script"": 60428, ""SMT"": 17998, ""C"": 7006, ""Game Maker Language"": 1350, ""Prolog"": 1069, ""Stata"": 467}",GNU General Public License v3.0,10,11,"[eeg, hardware, eit, tomography, arduino, brain-imaging, biomedical-instrumentation, electrical-impedance-tomography, scousetom]",10,7,44,10,8,48,50,861062380,45,703594696 10.5281/zenodo.1009086,10.5281/zenodo.1009086,1,publication,,40,,,,,,,,23,33,239,177,316,345,248659402,37,50467816 10.5281/zenodo.1009145,10.5281/zenodo.1009145,1,dataset,,203,,,,,,,,158,721,203,158,721,791,10634875447,791,10634875447 10.5281/zenodo.1009482,10.5281/zenodo.1009481,1,software,https://github.com/gsteele13/spyview,1,5,"{""C"": 885075, ""Roff"": 627970, ""Makefile"": 192023, ""C++"": 155649, ""Shell"": 95859, ""PostScript"": 39506, ""M4"": 24863, ""Python"": 17407, ""HTML"": 11356, ""Objective-C"": 6679, ""Awk"": 2451, ""Batchfile"": 2207, ""MATLAB"": 2007}",,1,3,[],1,1,38,1,1,38,38,14946455,38,14946455 10.5281/zenodo.1009576,10.5281/zenodo.1009575,1,dataset,,789,,,,,,,,568,210,789,568,210,225,2386688476,225,2386688476 10.5281/zenodo.1009710,10.5281/zenodo.1009709,1,publication,,22,,,,,,,,20,43,22,20,43,51,43742193,51,43742193 10.5281/zenodo.1010142,10.5281/zenodo.1010141,1,dataset,,,,,,,,,,,,,,,,,, 10.5281/zenodo.1010224,10.5281/zenodo.1010223,1,dataset,,7,,,,,,,,6,9,7,6,9,10,2158009,10,2158009 10.5281/zenodo.1010232,10.5281/zenodo.1010231,1,dataset,,,,,,,,,,,,,,,,,, 10.5281/zenodo.1010238,10.5281/zenodo.1010237,1,dataset,,1,,,,,,,,1,7,1,1,7,7,11779,7,11779 10.5281/zenodo.1010352,10.5281/zenodo.1010351,1,dataset,,5,,,,,,,,3,11,5,3,11,11,5104109457,11,5104109457 10.5281/zenodo.1010356,10.5281/zenodo.1010356,1,dataset,,7,,,,,,,,2,8,7,2,8,8,10196885689,8,10196885689 10.5281/zenodo.1010406,10.5281/zenodo.1010405,1,dataset,,0,,,,,,,,0,11,0,0,11,13,0,13,0 10.5281/zenodo.1010437,10.5281/zenodo.1010437,1,dataset,,3,,,,,,,,2,11,3,2,11,12,486362,12,486362 10.5281/zenodo.1011207,10.5281/zenodo.591597,1,software,https://github.com/nipy/nibabel,2,165,"{""Python"": 2400807, ""Makefile"": 7681, ""Shell"": 4790, ""PowerShell"": 2988, ""MATLAB"": 2702}",Other,261,42,[],261,2,32,92,14,541,674,288534681,34,7891846 10.5281/zenodo.1011360,10.5281/zenodo.1011359,1,publication,,95,,,,,,,,59,120,95,59,120,126,48789664,126,48789664 10.5281/zenodo.1012274,10.5281/zenodo.597824,1,software,https://github.com/Parallel-in-Time/pyParareal,0,1,"{""Python"": 142888}",,3,2,[],3,0,16,2,1,19,21,109670,18,0 10.5281/zenodo.1012306,10.5281/zenodo.1012305,1,software,https://github.com/rougier/spatial-computation,0,0,"{""Python"": 186477}",Other,8,1,"[python, matplotlib, voronoi, computational-neuroscience, biology, article]",8,0,3,0,0,3,3,0,3,0 10.5281/zenodo.1013210,10.5281/zenodo.1013209,1,software,https://github.com/joelbader/regulon-enrichment,2,0,"{""Python"": 28227, ""Makefile"": 6992, ""R"": 5905}",MIT License,0,2,[],0,2,20,2,2,20,21,1731926,21,1731926 10.5281/zenodo.1013415,10.5281/zenodo.1013414,1,software,https://github.com/HuffordLab/Wang_et_al._Demography,3,2,"{""R"": 106351, ""Shell"": 34040, ""Python"": 33549, ""PostScript"": 10408, ""Perl"": 7625}",,7,6,[],7,3,96,3,3,96,98,109789728,98,109789728 10.5281/zenodo.1013920,10.5281/zenodo.1013919,1,software,https://github.com/skrakau/PureCLIP,4,1,"{""C++"": 283945, ""CMake"": 38653, ""Shell"": 7909, ""Python"": 3219}",GNU General Public License v3.0,9,6,[],9,4,10,62,22,25,27,6423609,10,378488 10.5281/zenodo.1014052,10.5281/zenodo.793055,1,dataset,,6,,,,,,,,6,31,8,8,33,35,141063972,33,109959708 10.5281/zenodo.1014407,10.5281/zenodo.1014406,1,software,https://github.com/qian-yang/Skewt-QSO,1,0,"{""R"": 26981, ""IDL"": 13782, ""Python"": 2986, ""Prolog"": 2530}",GNU General Public License v3.0,2,1,[],2,1,85,1,1,85,85,320073943,85,320073943 10.5281/zenodo.1014582,10.5281/zenodo.802276,1,software,https://github.com/wence-/composable-solvers,5,1,"{""Python"": 88333, ""Shell"": 5088}",MIT License,0,2,[],0,5,24,9,8,39,43,76355103,25,76133535 10.5281/zenodo.10153,,1,software,https://github.com/F1000Research/cyrface,0,0,{},,0,1,[],0,0,6,0,0,6,6,0,6,0 10.5281/zenodo.1016153,10.5281/zenodo.1016152,1,software,https://github.com/tfursten/SI-cpp,2,0,"{""C++"": 104780, ""CMake"": 2211}",,0,1,[],0,1,20,2,1,20,24,89314,24,89314 10.5281/zenodo.1016257,10.5281/zenodo.598132,1,software,https://github.com/pierrepo/PBxplore,9,9,"{""Python"": 110164, ""Batchfile"": 236, ""Shell"": 219}",MIT License,14,8,"[python, protein, structure, bioinformatics-analysis]",14,6,55,11,6,75,80,144790179,60,118517553 10.5281/zenodo.10178,,1,software,https://github.com/ewanbarr/peasoup,0,5,"{""C++"": 324900, ""Cuda"": 51631, ""Makefile"": 13181, ""C"": 3685}",Apache License 2.0,6,5,[],6,0,10,0,0,10,10,0,10,0 10.5281/zenodo.1019880,10.5281/zenodo.1019879,1,software,https://github.com/diana-hep/spark-root,0,12,"{""Jupyter Notebook"": 2313379, ""Scala"": 246492}",Apache License 2.0,22,12,"[spark, scala, root, histogrammar, python, big-data]",22,0,15,5,4,50,58,1143865,17,0 10.5281/zenodo.1020266,10.5281/zenodo.1020265,1,software,https://github.com/NCBI-Hackathons/MetagenomicAntibioticResistance,4,10,"{""Shell"": 3086}",MIT License,8,12,[],8,3,32,4,3,32,34,3178792,34,3178792 10.5281/zenodo.1021149,10.5281/zenodo.1021148,1,software,https://github.com/liberfa/erfa,1,23,"{""C"": 2078287, ""M4"": 2889, ""Makefile"": 2628, ""Shell"": 116}",Other,54,19,[],54,1,39,1,1,39,43,778976,43,778976 10.5281/zenodo.1021607,10.5281/zenodo.1021606,1,dataset,,232,,,,,,,,64,82,232,64,82,84,62067200710,84,62067200710 10.5281/zenodo.1021859,10.5281/zenodo.1021858,1,dataset,,1,,,,,,,,1,10,1,1,10,10,47875,10,47875 10.5281/zenodo.10229,10.5281/zenodo.591979,1,software,https://github.com/psinger/PathTools,0,8,"{""Python"": 61152}",,10,4,[],10,0,10,0,0,11,13,0,10,0 10.5281/zenodo.10242,10.5281/zenodo.592034,1,software,https://github.com/MCTwo/MCMAC,3,0,"{""Python"": 23299}",Other,1,12,[],1,3,166,5,5,181,197,1495254,170,894783 10.5281/zenodo.1026617,10.5281/zenodo.1026616,1,software,https://github.com/hzi-bifo/SDplots_VaccineUpdates,2,0,{},,0,5,[],0,1,10,2,1,10,11,3663506,11,3663506 10.5281/zenodo.10271,,1,dataset,,46,,,,,,,,43,485,46,43,485,497,15417769998,497,15417769998 10.5281/zenodo.1027526,10.5281/zenodo.1027525,1,software,https://github.com/Tagliacollo/PartitionUCE,2,2,"{""Python"": 30414, ""R"": 11219, ""Shell"": 6055}",GNU General Public License v3.0,2,2,[],2,1,3,2,1,3,3,3762304082,3,3762304082 10.5281/zenodo.1028743,10.5281/zenodo.1028742,1,software,,,,,,,,,,,,,,,,,, 10.5281/zenodo.1028768,10.5281/zenodo.1028767,1,software,,5,,,,,,,,3,6,5,3,6,8,10174,8,10174 10.5281/zenodo.1030568,10.5281/zenodo.1030568,1,software,https://github.com/ealopez/flat_punch,2,0,"{""Python"": 74498, ""C"": 62032}",Other,0,1,[],0,1,11,2,1,11,11,152472170,11,152472170 10.5281/zenodo.1030812,10.5281/zenodo.1030811,1,software,https://github.com/cerebis/sim3C,2,1,"{""Python"": 148228}",GNU General Public License v3.0,7,2,[],7,1,0,5,3,25,29,9745567,0,3897076 10.5281/zenodo.1034025,10.5281/zenodo.1034024,1,dataset,,2,,,,,,,,1,2,6,1,29,40,88636,2,33574 10.5281/zenodo.1034082,10.5281/zenodo.1034082,1,dataset,,23,,,,,,,,9,21,23,9,22,22,977978,21,977978 10.5281/zenodo.1034385,10.5281/zenodo.1034384,1,dataset,,40,,,,,,,,17,70,40,17,70,75,5650474,75,5650474 10.5281/zenodo.1034551,10.5281/zenodo.786605,1,software,https://github.com/FRESNA/PyPSA,20,111,"{""Python"": 293251, ""CSS"": 948, ""Makefile"": 202}",GNU General Public License v3.0,235,56,"[python, loadflow, optimisation, pyomo, energy-system, power-systems-analysis, optimal-power-flow]",235,13,164,68,54,755,800,114815825,167,32831800 10.5281/zenodo.1034561,10.5281/zenodo.1034560,1,software,https://github.com/ashleefv/tbActivationDynamics,0,0,"{""Python"": 55567}","BSD 3-Clause ""New"" or ""Revised"" License",0,2,[],0,0,1,0,0,1,1,0,1,0 10.5281/zenodo.1035128,10.5281/zenodo.1035127,1,software,,1,,,,,,,,1,152,1,1,152,188,275220,188,275220 10.5281/zenodo.1035506,10.5281/zenodo.886330,1,software,https://github.com/moziya/OMSV,3,1,"{""C++"": 240188, ""MATLAB"": 11978, ""Shell"": 10808, ""Makefile"": 348}",,1,0,[],1,2,30,42,33,150,171,115102665,30,8269818 10.5281/zenodo.1035765,10.5281/zenodo.1035764,1,dataset,,15,,,,,,,,9,32,15,9,32,34,272399804775,34,272399804775 10.5281/zenodo.1035825,10.5281/zenodo.1035824,1,dataset,,4,,,,,,,,2,24,4,2,24,24,413619186,24,413619186 10.5281/zenodo.1035894,10.5281/zenodo.595522,1,software,https://github.com/danforthcenter/plantcv,9,92,"{""Python"": 828301, ""Shell"": 3752, ""Dockerfile"": 1239}",MIT License,192,43,"[science, phenotyping, bioinformatics, plant]",192,8,70,121,61,409,450,4408916019,71,194570811 10.5281/zenodo.1035995,10.5281/zenodo.1035994,1,dataset,,19,,,,,,,,15,18,19,15,18,18,3990639,18,3990639 10.5281/zenodo.1036007,10.5281/zenodo.1036006,1,software,https://github.com/FofanovLab/VaST,2,0,"{""Python"": 100395}",MIT License,4,3,[],4,1,2,2,1,2,2,1070734,2,1070734 10.5281/zenodo.1036739,10.5281/zenodo.1036738,1,dataset,,2,,,,,,,,2,26,2,2,26,30,26647201896,30,26647201896 10.5281/zenodo.1037126,10.5281/zenodo.1037125,1,publication,,0,,,,,,,,0,15,0,0,15,15,0,15,0 10.5281/zenodo.1037264,10.5281/zenodo.1037263,1,software,https://github.com/kklot/gennet,8,,,,,,,,8,35,8,8,35,36,2943280,36,2943280 10.5281/zenodo.1037439,10.5281/zenodo.1037438,1,software,https://github.com/hbc/bcbioRNASeq,10,16,"{""R"": 210295, ""TeX"": 39667, ""Shell"": 3241, ""CSS"": 55}",MIT License,30,5,"[bioinformatics, bioconductor, s4, rnaseq, deseq2, tximport]",30,9,12,505,40,65,78,1470768163,12,29636500 10.5281/zenodo.1037467,10.5281/zenodo.1037466,1,software,https://github.com/ccoolbaugh/Individualized_Cooling_Data_Analysis,3,1,"{""MATLAB"": 42504}",MIT License,0,2,"[matlab, data-analysis, thermoregulation, brown-adipose-tissue, skin-temperature, cold-exposure, ibutton]",0,2,0,11,5,5,5,575408,0,76560 10.5281/zenodo.1037563,10.5281/zenodo.1037562,1,software,https://github.com/james-dolezal/rp-tsne,3,1,"{""Python"": 14117}",,0,0,[],0,2,36,3,2,36,37,20343,37,20343 10.5281/zenodo.1037579,10.5281/zenodo.1037578,1,software,https://github.com/jellis18/PTMCMCSampler,0,10,"{""Python"": 64993, ""Shell"": 407}",MIT License,10,3,[],10,0,56,0,0,56,59,0,59,0 10.5281/zenodo.1037909,10.5281/zenodo.1036058,1,software,https://github.com/bio-tools/ToolDog,2,1,"{""Python"": 109487, ""Jupyter Notebook"": 39327, ""Common Workflow Language"": 15166}",MIT License,8,7,[],8,1,27,4,2,48,48,2519814,27,1259902 10.5281/zenodo.1037965,10.5281/zenodo.1037964,1,software,,1,,,,,,,,1,1,1,1,1,1,61809023,1,61809023 10.5281/zenodo.1038005,10.5281/zenodo.1036008,1,software,https://github.com/khillion/galaxyxml-analysis,0,1,"{""Python"": 30560}",MIT License,0,2,[],0,0,25,0,0,27,27,0,25,0 10.5281/zenodo.1038177,10.5281/zenodo.1038176,1,software,,2,,,,,,,,1,13,2,1,13,13,2417475,13,2417475 10.5281/zenodo.1038209,10.5281/zenodo.1038208,1,dataset,,35,,,,,,,,23,43,35,23,43,47,2662025,47,2662025 10.5281/zenodo.1038582,10.5281/zenodo.1038581,1,software,https://github.com/lukasgeyrhofer/phagegrowth,0,1,"{""Python"": 13623}",The Unlicense,1,1,[],1,0,8,0,0,8,10,0,10,0 10.5281/zenodo.1039241,10.5281/zenodo.832862,1,video,,43,,,,,,,,11,63,99,13,80,93,3522306939,69,1478505287 10.5281/zenodo.1039319,10.5281/zenodo.1039318,1,software,https://github.com/jbkalmbach/ESP,0,0,"{""Ruby"": 1384981, ""Python"": 161821}",GNU General Public License v3.0,1,2,[],1,0,7,0,0,7,7,0,7,0 10.5281/zenodo.1039729,10.5281/zenodo.1039728,1,software,https://github.com/Ifsttar/bil,7,0,"{""C"": 9178012, ""Rebol"": 6088931, ""GLSL"": 2338721, ""Fortran"": 713409, ""C++"": 140893, ""Yacc"": 84937, ""Gnuplot"": 80572, ""Assembly"": 80407, ""Makefile"": 43510, ""P4"": 20661, ""Lex"": 7588, ""CMake"": 3965, ""E"": 2955, ""MATLAB"": 2041, ""Shell"": 902, ""Forth"": 280}",Other,0,2,"[materials-science, finite-element-methods, finite-volume-methods, civil-engineering]",0,6,26,15,8,44,57,2607123496,29,1295222670 10.5281/zenodo.1039986,10.5281/zenodo.591576,1,software,https://github.com/tritemio/PyBroMo,0,4,"{""Python"": 215829, ""Jupyter Notebook"": 209678}",GNU General Public License v2.0,16,4,[],16,0,24,1,1,46,46,1056845,24,0 10.5281/zenodo.1040129,10.5281/zenodo.832284,1,dataset,,6,,,,,,,,6,21,7,6,23,24,137414785,21,117841146 10.5281/zenodo.1040160,10.5281/zenodo.1040159,1,software,https://github.com/miguelfp/nthRootsOfUnity,2,2,"{""Jupyter Notebook"": 1389616, ""Python"": 41908}",MIT License,0,1,[],0,1,3,8,7,30,35,45883670,3,2696 10.5281/zenodo.1040453,10.5281/zenodo.1040452,1,dataset,,11,,,,,,,,9,67,11,9,67,68,35175036930,68,35175036930 10.5281/zenodo.1040704,10.5281/zenodo.1040703,1,software,,3,,,,,,,,1,6,3,1,6,6,223245,6,223245 10.5281/zenodo.1040961,10.5281/zenodo.1036799,1,software,,3,,,,,,,,3,31,16,15,32,33,36845496,32,5362590 10.5281/zenodo.1041050,10.5281/zenodo.1041049,1,publication,,1,,,,,,,,1,8,1,1,8,11,1378668,11,1378668 10.5281/zenodo.1041310,10.5281/zenodo.1040865,1,publication,,12,,,,,,,,12,7,12,12,20,23,9547992,7,9547992 10.5281/zenodo.1041394,10.5281/zenodo.1041393,1,dataset,,7,,,,,,,,7,48,7,7,48,52,14268191,52,14268191 10.5281/zenodo.1041483,10.5281/zenodo.1041482,1,software,https://github.com/sonial/KniMet,2,1,{},Other,4,3,[],4,1,8,6,5,40,42,37003206,8,6813310 10.5281/zenodo.1041731,10.5281/zenodo.1041730,1,software,https://github.com/Marcraven/McStas-Imaging-Tools,4,0,{},,0,0,[],0,3,21,4,3,21,22,38684,22,38684 10.5281/zenodo.10421,,1,software,https://github.com/F1000Research/enhancedGraphics,2,0,{},,0,1,[],0,2,44,2,2,44,45,203830,45,203830 10.5281/zenodo.1042169,10.5281/zenodo.594196,1,software,https://github.com/refnx/refnx,4,9,"{""Jupyter Notebook"": 3675896, ""Python"": 1720597, ""TeX"": 54819, ""C++"": 19120, ""HTML"": 6142, ""C"": 3532, ""Batchfile"": 473, ""Dockerfile"": 406, ""Shell"": 209}","BSD 3-Clause ""New"" or ""Revised"" License",10,6,"[neutron, python, x-ray, reflectometry]",10,3,48,104,27,111,141,1625369928,51,49705848 10.5281/zenodo.1042177,10.5281/zenodo.1042176,1,software,https://github.com/adammarkovitz/sprint,0,0,{},,0,0,[],0,0,100,0,0,100,100,0,100,0 10.5281/zenodo.10424,,1,software,https://github.com/F1000Research/setsApp,0,0,{},,0,1,[],0,0,10,0,0,10,11,0,11,0 10.5281/zenodo.1042500,10.5281/zenodo.1042499,1,software,https://github.com/AshleySetter/optosim,2,1,"{""Python"": 98402, ""Makefile"": 84, ""Shell"": 73}",MIT License,2,1,"[stochastic-differential-equations, physics-simulation]",2,2,18,2,2,18,20,1135754,20,1135754 10.5281/zenodo.1042513,10.5281/zenodo.1042512,1,dataset,,2,,,,,,,,2,12,2,2,12,12,681666,12,681666 10.5281/zenodo.1042526,10.5281/zenodo.818085,1,software,https://github.com/AshleySetter/optoanalysis,0,3,"{""Python"": 225009, ""Batchfile"": 820, ""Makefile"": 613, ""Shell"": 117}",MIT License,2,2,"[data-analysis, data-visualisation, physics-analysis]",2,0,49,0,0,55,57,0,49,0 10.5281/zenodo.1042588,10.5281/zenodo.1042588,1,software,https://github.com/m3phisto/DSBS-MutInf-counterexample,0,0,"{""MATLAB"": 10201, ""M"": 76}",MIT License,0,1,[],0,0,4,0,0,4,5,0,5,0 10.5281/zenodo.1042809,10.5281/zenodo.1042808,1,software,,1,,,,,,,,1,14,1,1,14,22,22561551,22,22561551 10.5281/zenodo.10432,10.5281/zenodo.592130,1,software,https://github.com/fpetitjean/DBA,77,17,"{""Python"": 22954, ""Java"": 15285, ""MATLAB"": 4104, ""Shell"": 45}",GNU General Public License v3.0,48,9,[],48,73,555,82,78,607,630,1293593,571,1213058 10.5281/zenodo.10433,,1,software,https://github.com/kthyng/tracpy,2,18,"{""Python"": 177057, ""Fortran"": 81146, ""Makefile"": 2192}",MIT License,20,8,[],20,2,122,2,2,122,124,4930322,124,4930322 10.5281/zenodo.1043436,10.5281/zenodo.1043435,1,software,https://github.com/mritchie/EGSEA123,2,0,{},,6,1,[],6,1,50,2,1,50,63,928110,63,928110 10.5281/zenodo.1043486,10.5281/zenodo.1043485,1,software,https://github.com/IGITUGraz/spore-nest-module,0,7,"{""C++"": 211422, ""Python"": 53978, ""CMake"": 14652, ""Shell"": 3198}",GNU General Public License v2.0,19,8,"[nest, spiking-neural-networks, music, reinforcement-learning, nest-module]",19,0,27,0,0,27,28,0,28,0 10.5281/zenodo.1043571,10.5281/zenodo.1043570,1,software,https://github.com/mdmurbach/ImpedanceAnalyzer,22,8,"{""JavaScript"": 68631, ""Python"": 25323, ""HTML"": 21097, ""CSS"": 8530, ""Shell"": 284, ""Batchfile"": 93}",Other,16,4,"[impedance, electrochemistry, lithium-ion, batteries]",16,21,118,22,21,118,128,204663580,128,204663580 10.5281/zenodo.1043583,10.5281/zenodo.1043582,1,software,https://github.com/mdmurbach/ImpedanceAnalyzer-manuscript,39,0,"{""Jupyter Notebook"": 4375407, ""Python"": 11554, ""MATLAB"": 11335}",,4,2,[],4,26,127,39,26,127,138,2083099668,138,2083099668 10.5281/zenodo.1043585,10.5281/zenodo.1043584,1,software,,2,,,,,,,,1,3,2,1,3,5,60919970,5,60919970 10.5281/zenodo.1043612,10.5281/zenodo.1043611,1,publication,https://github.com/rrwick/Basecalling-comparison,5,32,"{""Python"": 45891, ""Shell"": 40578}",GNU General Public License v3.0,232,55,[],232,5,219,122,105,1623,1888,9237022401,229,292803395 10.5281/zenodo.1043867,10.5281/zenodo.1043867,1,software,https://github.com/JE1314/LAMMPS_builder,8,1,"{""Python"": 87614}",GNU General Public License v3.0,5,4,[],5,8,26,8,8,26,30,2656872,30,2656872 10.5281/zenodo.10439,,1,software,https://github.com/stain/ro-combine-archive,0,0,"{""Java"": 6507}",MIT License,3,3,[],3,0,4,0,0,4,4,0,4,0 10.5281/zenodo.1043944,10.5281/zenodo.1043943,1,software,https://github.com/benruijl/forcer,2,0,"{""PLSQL"": 5871245, ""C"": 3965147, ""Python"": 221304, ""C++"": 208996, ""Visual Basic"": 274}",,4,6,"[physics, quantum-field-theory, feynman-diagrams]",4,2,13,2,2,13,18,2343494,18,2343494 10.5281/zenodo.1043973,10.5281/zenodo.1043972,1,software,https://github.com/dguevel/PyZOGY,1,0,"{""Python"": 43494}",MIT License,2,1,[],2,1,80,1,1,80,87,12864,87,12864 10.5281/zenodo.10441,,1,software,https://github.com/F1000Research/genomespace-cytoscape-weblaunch,0,0,{},,0,1,[],0,0,130,0,0,130,136,0,136,0 10.5281/zenodo.10442,,1,dataset,,2,,,,,,,,2,29,2,2,29,33,157218,33,157218 10.5281/zenodo.1044368,10.5281/zenodo.1044367,1,software,https://github.com/jrcunning/symshuff-3c,0,0,"{""HTML"": 1896804}",,0,1,[],0,0,18,0,0,18,18,0,18,0 10.5281/zenodo.1044633,10.5281/zenodo.1044632,1,software,https://github.com/parisveltsos/feminisation_direction,4,0,"{""R"": 266012, ""Shell"": 7663}",,0,0,[],0,4,32,8,8,65,71,181674952,34,36261912 10.5281/zenodo.1045530,10.5281/zenodo.596467,1,software,https://github.com/esthervankleef/Two_strain_model_published,4,0,"{""R"": 87295}",MIT License,0,2,[],0,2,35,11,8,109,146,285510981,41,285351404 10.5281/zenodo.1045582,10.5281/zenodo.1045582,1,software,,2,,,,,,,,2,27,2,2,27,28,13297894,28,13297894 10.5281/zenodo.1045805,10.5281/zenodo.1045804,1,dataset,,6,,,,,,,,4,17,6,4,17,24,2141300034,24,2141300034 10.5281/zenodo.1045809,10.5281/zenodo.1045808,1,dataset,,1,,,,,,,,1,26,1,1,26,26,36055536,26,36055536 10.5281/zenodo.10465,,1,software,https://github.com/F1000Research/bridgedb.cytoscape,2,0,{},,0,1,[],0,2,12,2,2,12,12,1075766,12,1075766 10.5281/zenodo.1047069,10.5281/zenodo.836849,1,software,https://github.com/greenelab/tybalt,5,25,"{""HTML"": 2653304, ""Jupyter Notebook"": 2015301, ""Python"": 193606, ""R"": 33469, ""Shell"": 1150}","BSD 3-Clause ""New"" or ""Revised"" License",80,6,"[cancer-genomics, deep-learning, unsupervised-learning, gene-expression, variational-autoencoder]",80,4,87,10,7,100,107,195704793,90,153765125 10.5281/zenodo.1047182,10.5281/zenodo.596933,1,software,https://github.com/greenelab/pancancer,0,18,"{""Jupyter Notebook"": 1003513, ""HTML"": 285443, ""R"": 104543, ""Python"": 87147, ""Shell"": 13014}","BSD 3-Clause ""New"" or ""Revised"" License",46,7,"[tcga, classifier, transcriptome, pancancer, cancer, gene-expression, machine-learning]",46,0,8,35,31,1438,1475,112069237,8,0 10.5281/zenodo.10481,,1,dataset,,13,,,,,,,,13,52,13,13,52,60,86248591,60,86248591 10.5281/zenodo.1048268,10.5281/zenodo.1048268,1,dataset,,13,,,,,,,,13,74,13,13,74,83,58957795,83,58957795 10.5281/zenodo.1048838,10.5281/zenodo.1048838,1,software,,1,,,,,,,,1,3,1,1,3,3,28444,3,28444 10.5281/zenodo.1048916,10.5281/zenodo.1048915,1,software,https://github.com/skrakau/PureCLIP_data,3,0,"{""HTML"": 428120}",,1,1,[],1,2,6,3,2,6,6,936012573,6,936012573 10.5281/zenodo.1048928,10.5281/zenodo.1048928,1,dataset,,4,,,,,,,,4,29,4,4,29,29,6475378848,29,6475378848 10.5281/zenodo.1048943,10.5281/zenodo.1048942,1,software,,119,,,,,,,,78,269,119,78,269,290,32877675,290,32877675 10.5281/zenodo.1049074,10.5281/zenodo.1049073,1,software,https://github.com/mccallm/miRcomp-shiny,1,0,"{""R"": 67691}",GNU General Public License v2.0,0,2,[],0,1,16,1,1,16,16,1857054,16,1857054 10.5281/zenodo.1049160,10.5281/zenodo.1049159,1,software,https://github.com/mweastwood/TTCal.jl,1,2,"{""Julia"": 164135}",GNU General Public License v3.0,5,5,"[julia, ovro-lwa, calibration, radio-astronomy]",5,1,27,1,1,27,28,311234,28,311234 10.5281/zenodo.1049419,10.5281/zenodo.1049419,1,software,https://github.com/sbaltes/api-retriever,9,2,"{""Python"": 68673}",Apache License 2.0,3,3,[],3,5,8,12,6,11,14,437445,9,348696 10.5281/zenodo.10498,,1,dataset,,870,,,,,,,,47,389,870,47,389,424,407851215462,424,407851215462 10.5281/zenodo.1051252,10.5281/zenodo.1051251,1,software,https://github.com/rainwoodman/bigfile,0,2,"{""C"": 136044, ""Python"": 59208, ""CMake"": 3122, ""Shell"": 2847, ""Makefile"": 2021, ""Fortran"": 816}","BSD 2-Clause ""Simplified"" License",6,4,[],6,0,17,0,0,17,17,0,17,0 10.5281/zenodo.1051256,10.5281/zenodo.1051255,1,software,https://github.com/nickhand/classylss,3,2,"{""Python"": 77213, ""Makefile"": 1251, ""Shell"": 535}",GNU General Public License v3.0,4,3,"[cosmology, large-scale-structure, cmb, python, boltzmann-code, cosmic-microwave-background, class]",4,2,15,3,2,15,16,178908,16,178908 10.5281/zenodo.1051306,10.5281/zenodo.1051305,1,software,https://github.com/bccp/runtests,0,2,"{""Python"": 52989, ""Shell"": 206}","BSD 2-Clause ""Simplified"" License",4,3,"[unit-testing, mpi, python, pytest]",4,0,10,0,0,10,10,0,10,0 10.5281/zenodo.1051308,10.5281/zenodo.1051307,1,software,https://github.com/rainwoodman/pfft-python,3,7,"{""Python"": 100565, ""Shell"": 2392}",GNU General Public License v3.0,11,6,[],11,2,15,3,2,15,15,134667,15,134667 10.5281/zenodo.10523,,1,software,https://github.com/F1000Research/genemania,0,0,{},,0,1,[],0,0,103,0,0,103,103,0,103,0 10.5281/zenodo.10533,,1,software,https://github.com/aschn/picolo,0,0,"{""Python"": 239675}",,1,1,[],1,0,17,0,0,17,17,0,17,0 10.5281/zenodo.10536,,1,software,https://github.com/F1000Research/genomespace-cytoscape,0,0,{},,0,1,[],0,0,65,0,0,65,66,0,66,0 10.5281/zenodo.1054013,10.5281/zenodo.1054012,1,software,,168,,,,,,,,74,66,168,74,66,69,303605695,69,303605695 10.5281/zenodo.1054110,10.5281/zenodo.1045336,1,software,https://github.com/esa/pagmo2,6,67,"{""C++"": 47667110, ""Python"": 276167, ""CMake"": 119441, ""Shell"": 13670, ""Batchfile"": 491, ""PowerShell"": 298}",Other,302,29,"[optimization, optimization-algorithms, optimization-methods, optimization-tools, parallel-computing, parallel-processing, evolutionary-algorithms, multi-objective-optimization, stochastic-optimizers, genetic-algorithm, metaheuristics, evolutionary-strategy, artificial-intelligence]",302,5,158,94,63,1579,1817,1149429450,158,55228518 10.5281/zenodo.10542,,1,software,https://github.com/F1000Research/EnrichmentMapApp,2,0,{},,0,1,[],0,2,14,2,2,14,14,35146808,14,35146808 10.5281/zenodo.1054444,10.5281/zenodo.1002377,1,software,https://github.com/MLWave/kepler-mapper,32,130,"{""Python"": 140391, ""JavaScript"": 9558, ""HTML"": 5988, ""CSS"": 3570, ""TeX"": 2999, ""Makefile"": 427}",MIT License,437,46,"[data-visualization, mapper-algorithm, topological-data-analysis, tda, python]",437,31,1016,43,36,1071,1192,168767659,1088,122555104 10.5281/zenodo.1054550,10.5281/zenodo.1054549,1,software,,3,,,,,,,,3,27,3,3,27,29,194529,29,194529 10.5281/zenodo.10560,,1,software,https://github.com/F1000Research/KEGGscape,2,0,{},,0,1,[],0,2,73,2,2,73,74,11079974,74,11079974 10.5281/zenodo.10568,,1,dataset,,18,,,,,,,,18,167,18,18,167,182,632373678,182,632373678 10.5281/zenodo.10571,,1,publication,,285,,,,,,,,273,40,285,273,40,41,5186834985,41,5186834985 10.5281/zenodo.10587,10.5281/zenodo.592346,1,software,https://github.com/ALaDyn/piccante,3,23,"{""C++"": 717631, ""CMake"": 30767, ""Shell"": 20004, ""C"": 11004, ""Makefile"": 6113, ""PowerShell"": 466}",GNU General Public License v3.0,35,15,[],35,3,46,20,18,355,399,35272230,46,4593657 10.5281/zenodo.10588,,1,software,https://github.com/ODiogoSilva/ElConcatenero3,2,0,"{""Python"": 55125}",,2,4,[],2,2,28,2,2,28,31,45668,31,45668 10.5281/zenodo.1058970,10.5281/zenodo.596388,1,software,https://github.com/ligo-cbc/pycbc,12,178,"{""Python"": 4701332, ""Shell"": 123435, ""HTML"": 19675, ""C"": 5058, ""JavaScript"": 4571, ""Dockerfile"": 3115, ""CSS"": 2861}",GNU General Public License v3.0,136,45,"[astronomy, physics, gravity, ligo, gravitational-waves, pycbc, analysis, python, black-hole, neutron-star, gwastro, virgo, signal-processing, open-science]",136,8,54,1068,53,1139,1438,12433542610,59,197181564 10.5281/zenodo.10591,,1,dataset,,25,,,,,,,,14,124,25,14,124,130,3802509761,130,3802509761 10.5281/zenodo.1059119,10.5281/zenodo.1059118,1,software,https://github.com/expfactory/expfactory,2,7,"{""Python"": 171092, ""HTML"": 53060, ""TeX"": 24350, ""Shell"": 13210, ""CSS"": 11293, ""JavaScript"": 8431, ""Dockerfile"": 1987}","BSD 3-Clause ""New"" or ""Revised"" License",18,10,"[reproducible, container, psychology, experiments, experiment-factory, singularity, battery, expfactory]",18,1,8,2,1,18,18,2104728,8,2104728 10.5281/zenodo.10625,,1,software,,0,,,,,,,,0,9,0,0,9,9,0,9,0 10.5281/zenodo.1063531,10.5281/zenodo.1063530,1,dataset,,11,,,,,,,,6,75,11,6,75,76,54150680512,76,54150680512 10.5281/zenodo.1063948,10.5281/zenodo.1063947,1,dataset,,46,,,,,,,,6,69,46,6,69,77,3546081,77,3546081 10.5281/zenodo.1063990,10.5281/zenodo.1063989,1,software,https://github.com/jmetz/momanalysis,11,0,"{""Python"": 246037, ""Batchfile"": 495}",MIT License,0,2,[],0,11,41,13,12,47,57,4503313,50,3783219 10.5281/zenodo.1064045,10.5281/zenodo.1064044,1,software,https://github.com/fpartridge/invapp-paragon,2,0,"{""MATLAB"": 16906, ""Mathematica"": 6754}",MIT License,0,1,"[image-analysis, drug-discovery]",0,1,6,2,1,6,6,21378,6,21378 10.5281/zenodo.1064111,10.5281/zenodo.1064110,1,dataset,,17,,,,,,,,9,35,17,9,35,38,812963,38,812963 10.5281/zenodo.1064302,10.5281/zenodo.1064301,1,software,https://github.com/bmorris3/trappist1_arctic_2016,1,0,"{""Python"": 58255}",MIT License,0,1,"[astronomy, photometry]",0,1,8,1,1,8,9,2461307,9,2461307 10.5281/zenodo.1064310,10.5281/zenodo.1064310,1,software,,2,,,,,,,,2,6,3,3,7,10,287927471,8,191952080 10.5281/zenodo.1064450,10.5281/zenodo.1064449,1,dataset,,4,,,,,,,,3,32,4,3,32,34,62490066716,34,62490066716 10.5281/zenodo.1064782,10.5281/zenodo.1059099,1,software,https://github.com/tlambert03/LLSpy,1,3,"{""Python"": 606284, ""Shell"": 2034, ""Batchfile"": 198}",Other,10,7,"[microscopy, light-sheet, image-processing, image-analysis]",10,1,9,3,2,46,50,163959624,9,54612218 10.5281/zenodo.1064841,10.5281/zenodo.803308,1,software,https://github.com/manalirupji/GAC,9,0,"{""R"": 66294}",,0,1,[],0,6,22,13,9,53,62,52881673,23,36495543 10.5281/zenodo.10652,,1,software,,1,,,,,,,,1,37,1,1,37,37,2678553,37,2678553 10.5281/zenodo.1065327,10.5281/zenodo.1065326,1,publication,,59,,,,,,,,50,48,59,50,48,55,35407670,55,35407670 10.5281/zenodo.1065776,10.5281/zenodo.1065775,1,software,,13,,,,,,,,10,26,13,10,26,26,5478623,26,5478623 10.5281/zenodo.1065973,10.5281/zenodo.1065973,1,software,https://github.com/FAIRMetrics/Metrics,71,13,"{""Ruby"": 250493, ""JavaScript"": 171329, ""CSS"": 98353, ""HTML"": 50912, ""Perl"": 49531, ""TeX"": 44160, ""Roff"": 26258, ""Python"": 5921, ""Shell"": 3036, ""CoffeeScript"": 1477}",,56,31,[],56,71,453,77,76,549,616,261100189,507,253141199 10.5281/zenodo.1065976,10.5281/zenodo.1065975,1,software,,1,,,,,,,,1,27,1,1,27,28,50611636,28,50611636 10.5281/zenodo.1066258,10.5281/zenodo.1066257,1,software,https://github.com/noncodo/BigRedButton,12,0,"{""TeX"": 536018, ""Roff"": 403652, ""C"": 256506, ""Makefile"": 127595, ""Shell"": 110775, ""Pascal"": 99027, ""C++"": 93475, ""Java"": 23282, ""R"": 1158, ""Dockerfile"": 981, ""M4"": 254}",GNU General Public License v2.0,1,2,"[bioinformatics, rna-structure, lncrna, transcriptomics, genome-annotation]",1,12,50,12,12,50,56,304888332,56,304888332 10.5281/zenodo.1066547,10.5281/zenodo.1066547,1,software,,1,,,,,,,,1,4,1,1,4,4,57376013,4,57376013 10.5281/zenodo.10668,10.5281/zenodo.591397,1,software,https://github.com/nnalpas/RNA-sequencing,2,10,"{""Perl"": 155030, ""R"": 146956}",GNU General Public License v2.0,3,3,[],3,2,20,2,2,31,32,167578,20,167578 10.5281/zenodo.1066802,10.5281/zenodo.1066801,1,dataset,,0,,,,,,,,0,18,0,0,18,18,0,18,0 10.5281/zenodo.1066849,10.5281/zenodo.1066848,1,dataset,,204,,,,,,,,2,11,204,2,11,12,202560187,12,202560187 10.5281/zenodo.1066914,10.5281/zenodo.1066913,1,software,,16,,,,,,,,7,16,16,7,16,18,152980,18,152980 10.5281/zenodo.1067481,10.5281/zenodo.1067480,1,dataset,,1,,,,,,,,1,14,1,1,14,15,718310756,15,718310756 10.5281/zenodo.10679,10.5281/zenodo.592282,1,software,https://github.com/IngoScholtes/TemporalNetworks,5,7,"{""C#"": 168459}",,7,4,[],7,5,55,5,5,60,66,281420,60,281420 10.5281/zenodo.1068235,10.5281/zenodo.1068234,1,publication,,11,,,,,,,,11,17,11,11,17,17,5868577,17,5868577 10.5281/zenodo.1068252,10.5281/zenodo.1068251,1,software,https://github.com/openphacts/OPS_LinkedDataApi,1,8,"{""PHP"": 2112186, ""HTML"": 1821624, ""XSLT"": 255631, ""JavaScript"": 89595, ""Shell"": 34037, ""CSS"": 29948, ""Dockerfile"": 1559}",Other,10,41,[],10,1,32,1,1,32,33,5402622,33,5402622 10.5281/zenodo.1068265,10.5281/zenodo.1068264,1,publication,,0,,,,,,,,0,12,0,0,12,13,0,13,0 10.5281/zenodo.1068330,10.5281/zenodo.597628,1,software,https://github.com/kurator-org/kurator-validation,3,3,"{""Python"": 824903, ""Java"": 113517, ""OpenEdge ABL"": 33701, ""Shell"": 10179}",,3,12,[],3,2,5,3,2,6,6,40623600,5,40623600 10.5281/zenodo.1068519,10.5281/zenodo.1068518,1,software,https://github.com/akarpf/green_bonds,8,1,"{""Jupyter Notebook"": 268690, ""R"": 17482}",,0,0,[],0,8,32,8,8,32,32,4496568,32,4496568 10.5281/zenodo.1068656,10.5281/zenodo.1068655,1,software,https://github.com/scientificomputing/tessellate,0,1,"{""Python"": 123307, ""Tcl"": 5436, ""Makefile"": 2330, ""Shell"": 51}",Other,0,1,[],0,0,14,0,0,14,14,0,14,0 10.5281/zenodo.1068692,10.5281/zenodo.1068691,1,software,https://github.com/scientificomputing/Montage,3,1,"{""Python"": 978413, ""JavaScript"": 130927, ""HTML"": 48174, ""CSS"": 19221, ""Makefile"": 2269, ""Shell"": 1510}",GNU General Public License v3.0,0,1,[],0,2,13,3,2,14,14,5894373,13,5894373 10.5281/zenodo.1068939,10.5281/zenodo.1068938,1,software,,7,,,,,,,,3,57,7,3,57,67,37477176,67,37477176 10.5281/zenodo.1068952,10.5281/zenodo.1068951,1,software,,3,,,,,,,,3,55,3,3,55,64,37461723,64,37461723 10.5281/zenodo.1068972,10.5281/zenodo.595315,1,software,https://github.com/SELAB-AA/fragbinpacking-results,4,0,{},Creative Commons Attribution 4.0 International,0,2,[],0,3,5,10,3,7,9,13111357,6,6792148 10.5281/zenodo.1068975,10.5281/zenodo.595305,1,software,https://github.com/SELAB-AA/fragbinpacking-optimizer,3,1,"{""C++"": 87840, ""Makefile"": 5628}",MIT License,0,2,[],0,3,13,6,6,22,27,267699,14,186069 10.5281/zenodo.1068997,10.5281/zenodo.1068996,1,software,https://github.com/ms609/Ternary,1,0,"{""R"": 51868, ""Rebol"": 1823, ""Shell"": 520}",,7,2,[],7,1,34,10,9,171,190,458406,36,17547 10.5281/zenodo.1069066,10.5281/zenodo.1069065,1,dataset,,0,,,,,,,,0,9,0,0,9,9,0,9,0 10.5281/zenodo.1069104,10.5281/zenodo.1043491,1,dataset,,141,,,,,,,,46,88,145,48,91,101,11096407,96,10584387 10.5281/zenodo.1069113,10.5281/zenodo.596424,1,software,https://github.com/tpq/exprso,2,5,"{""R"": 211569}",,11,3,[],11,1,15,2,1,33,34,1085356,15,1085356 10.5281/zenodo.1069114,10.5281/zenodo.1069095,1,software,https://github.com/emmesgit/RSEQREP,0,1,"{""R"": 323282, ""Shell"": 86704, ""Perl"": 53504}",Other,2,3,[],2,0,12,6,6,48,53,155602346,12,0 10.5281/zenodo.1069568,10.5281/zenodo.999030,1,dataset,,3,,,,,,,,3,18,5,3,25,27,177830,19,84543 10.5281/zenodo.1069787,10.5281/zenodo.1069786,1,dataset,,64,,,,,,,,51,121,192,123,249,264,566917124,126,182490313 10.5281/zenodo.1069858,10.5281/zenodo.1069857,1,dataset,https://github.com/microbe-directory/microbe-directory,1,0,"{""Python"": 2022}",MIT License,6,3,[],6,1,52,1,1,68,68,902487,52,902487 10.5281/zenodo.1069860,10.5281/zenodo.1069859,1,software,,1,,,,,,,,1,15,1,1,15,15,3935999,15,3935999 10.5281/zenodo.1073168,10.5281/zenodo.1073167,1,dataset,,11,,,,,,,,7,64,11,7,64,67,7353604522,67,7353604522 10.5281/zenodo.10748,,1,software,https://github.com/F1000Research/shinyMethyl,0,0,{},,0,1,[],0,0,40,0,0,40,40,0,40,0 10.5281/zenodo.10761,,1,software,,0,,,,,,,,0,3,0,0,3,3,0,3,0 10.5281/zenodo.1077457,10.5281/zenodo.1077456,1,publication,,8,,,,,,,,7,11,8,7,11,12,5669704,12,5669704 10.5281/zenodo.10782,10.5281/zenodo.592385,1,software,https://github.com/DASpringate/Cochrane_scraper,2,1,"{""Clojure"": 14459}",Eclipse Public License 1.0,7,3,[],7,2,43,2,2,44,48,30004,46,30004 10.5281/zenodo.1079881,10.5281/zenodo.1079880,1,software,https://github.com/EBL-Marianas/ChiliEcosystemServices_EcolAppl,3,0,"{""R"": 2369}",MIT License,0,2,[],0,3,24,3,3,24,24,87123,24,87123 10.5281/zenodo.1079888,10.5281/zenodo.1079878,1,software,,7,,,,,,,,7,76,191,159,1554,1894,2943000598,84,38748556 10.5281/zenodo.1079898,10.5281/zenodo.1079878,1,software,,35,,,,,,,,29,284,191,159,1554,1894,2943000598,315,639697415 10.5281/zenodo.1079909,10.5281/zenodo.1079878,1,software,,13,,,,,,,,13,298,191,159,1554,1894,2943000598,316,125798075 10.5281/zenodo.1082696,10.5281/zenodo.1043611,1,publication,https://github.com/rrwick/Basecalling-comparison,10,32,"{""Python"": 45891, ""Shell"": 40578}",GNU General Public License v3.0,232,55,[],232,9,254,122,105,1623,1888,9237022401,261,639144260 10.5281/zenodo.10855,,1,software,https://github.com/willpearse/willeerd,0,2,"{""R"": 77849}",,5,3,[],5,0,17,0,0,17,17,0,17,0 10.5281/zenodo.1086491,10.5281/zenodo.1086490,1,dataset,,50,,,,,,,,23,38,50,23,38,39,12240910721,39,12240910721 10.5281/zenodo.1086683,10.5281/zenodo.1086682,1,publication,,7,,,,,,,,6,8,7,6,8,9,3181010,9,3181010 10.5281/zenodo.1087037,10.5281/zenodo.1087036,1,publication,,4,,,,,,,,3,4,4,3,4,4,2379316,4,2379316 10.5281/zenodo.1087459,10.5281/zenodo.1087459,1,software,https://github.com/ealopez/TappingMode_Simulations,1,0,"{""Jupyter Notebook"": 328369, ""Python"": 59512}",MIT License,0,1,[],0,1,24,1,1,24,27,413426970,27,413426970 10.5281/zenodo.1088888,10.5281/zenodo.1088887,1,publication,,2,,,,,,,,2,7,2,2,7,7,654086,7,654086 10.5281/zenodo.1089136,10.5281/zenodo.1089135,1,publication,,5,,,,,,,,4,7,5,4,7,8,1244215,8,1244215 10.5281/zenodo.10902,10.5281/zenodo.592414,1,software,https://github.com/tiagopereira/rh,0,0,"{""C"": 1409053, ""Prolog"": 253300, ""IDL"": 179104, ""Makefile"": 16914, ""Python"": 10108, ""C++"": 6082, ""Fortran"": 3281, ""Objective-C"": 2503, ""QMake"": 355}",,0,1,[],0,0,21,0,0,97,97,0,21,0 10.5281/zenodo.1091111,10.5281/zenodo.1091111,1,dataset,,8,,,,,,,,3,70,9,4,75,76,61197800583,71,56925305353 10.5281/zenodo.1091698,10.5281/zenodo.1091697,1,publication,,7,,,,,,,,6,8,7,6,8,8,1838662,8,1838662 10.5281/zenodo.1093923,10.5281/zenodo.1093923,1,publication,,5,,,,,,,,5,12,5,5,12,12,3140995,12,3140995 10.5281/zenodo.1095017,10.5281/zenodo.1095016,1,software,,12,,,,,,,,12,40,12,12,40,41,391812,41,391812 10.5281/zenodo.1095151,10.5281/zenodo.1095150,1,software,,0,,,,,,,,0,18,0,0,18,21,0,21,0 10.5281/zenodo.1095208,10.5281/zenodo.593963,1,software,https://github.com/lingfeiwang/findr,0,0,"{""C"": 272163, ""C++"": 13350, ""Makefile"": 6645}",GNU Affero General Public License v3.0,12,3,"[network-inference, systems-biology, bayesian-network, gene-regulation, directed-graph, dag]",12,0,0,0,0,5,5,0,0,0 10.5281/zenodo.1095402,10.5281/zenodo.1095401,1,dataset,,2,,,,,,,,2,23,2,2,23,24,11151387,24,11151387 10.5281/zenodo.1095696,10.5281/zenodo.1066531,1,software,https://github.com/karel-brinda/ococo,1,2,"{""C++"": 58418, ""Python"": 4007, ""Makefile"": 3486, ""Roff"": 2350, ""Shell"": 1745}",MIT License,40,8,"[ngs, variant-calling, online-algorithms, bioinformatics, consensus]",40,1,11,12,6,16,17,34139664,12,2511518 10.5281/zenodo.10980,,1,software,,6,,,,,,,,2,61,6,2,61,61,147014,61,147014 10.5281/zenodo.1098086,10.5281/zenodo.1098085,1,publication,,13,,,,,,,,11,16,13,11,16,17,3093649,17,3093649 10.5281/zenodo.1098208,10.5281/zenodo.1098207,1,dataset,,3,,,,,,,,3,24,3,3,24,26,4288672182,26,4288672182 10.5281/zenodo.1098231,10.5281/zenodo.835024,1,software,https://github.com/cytoscape/cytoscape.js-cose-bilkent,4,28,"{""JavaScript"": 304843, ""HTML"": 41995}",MIT License,61,22,"[cytoscapejs, cytoscapejs-extension]",61,4,68,8,7,165,182,1025292,75,368640 10.5281/zenodo.1098432,10.5281/zenodo.1098432,1,software,https://github.com/mariomerinomartinez/akiles2d,3,2,"{""MATLAB"": 34881}",Other,4,3,"[plasma, plume, electric, propulsion, kinetic, code, matlab]",4,3,33,3,3,33,36,71034,36,71034 10.5281/zenodo.1098651,10.5281/zenodo.1098650,1,software,https://github.com/robsyme/nf-repeatmasking,1,3,"{""Perl"": 97323, ""Lua"": 18732, ""Ruby"": 3315}",MIT License,5,1,"[bioinformatics, nextflow, transposable-elements, genomics]",5,1,18,5,4,36,39,329888,19,58408 10.5281/zenodo.10999,,1,software,,0,,,,,,,,0,39,0,0,39,39,0,39,0 10.5281/zenodo.1100953,10.5281/zenodo.1100952,1,dataset,,3,,,,,,,,2,16,3,2,16,16,33622467801,16,33622467801 10.5281/zenodo.1100978,10.5281/zenodo.891230,1,software,https://github.com/mschauer/Bridge.jl,4,14,"{""Jupyter Notebook"": 8099361, ""Julia"": 390194, ""R"": 9651}",Other,38,6,"[diffusion, julia, stochastic-differential-equations, mcmc, bayesian-inference, sde, brownian-motion, diffusion-processes, simulating-diffusion-bridges, gamma-process, ornstein-uhlenbeck, vasicek, levy-process]",38,2,12,24,7,21,28,10499678,12,1970500 10.5281/zenodo.1101123,10.5281/zenodo.839580,1,software,https://github.com/weecology/forecasts,24,2,{},Creative Commons Zero v1.0 Universal,0,2,[],0,15,11,1272,138,149,174,12740260874,11,120043176 10.5281/zenodo.1101243,10.5281/zenodo.1101242,1,dataset,,6,,,,,,,,5,43,6,5,43,45,13754153250,45,13754153250 10.5281/zenodo.11022,,1,dataset,,6,,,,,,,,6,35,6,6,35,35,417750,35,417750 10.5281/zenodo.11034,,1,software,https://github.com/thotypous/AcqSys,0,1,"{""Bluespec"": 39443, ""Python"": 4038, ""C"": 4028, ""C++"": 3244, ""Makefile"": 2247, ""Verilog"": 300}",MIT License,0,1,"[hardware-designs, cpld, neuroscience, bluespec]",0,0,7,0,0,7,7,0,7,0 10.5281/zenodo.11042,10.5281/zenodo.591938,1,software,https://github.com/AAAI-DISIM-UnivAQ/DALI,0,5,"{""Prolog"": 161579}",Apache License 2.0,7,6,"[prolog, multi-agent-systems, event-driven, logic-programming]",7,0,10,17,2,47,59,3945959,11,0 10.5281/zenodo.1105869,10.5281/zenodo.1105868,1,publication,,70,,,,,,,,64,107,70,64,107,121,7670880,121,7670880 10.5281/zenodo.11067,10.5281/zenodo.592459,1,software,https://github.com/social-simulation/context-permeability,0,0,"{""Java"": 93960}",,0,1,[],0,0,9,0,0,9,9,0,9,0 10.5281/zenodo.11069,,1,software,https://github.com/b-have/bhave.network,0,1,"{""Java"": 144443}",GNU General Public License v3.0,2,1,[],2,0,3,0,0,3,3,0,3,0 10.5281/zenodo.11080,10.5281/zenodo.592253,1,software,https://github.com/iandol/opticka,1,12,"{""MATLAB"": 3245552, ""Perl"": 6631, ""Processing"": 2746, ""Shell"": 1499, ""M"": 1026, ""AutoIt"": 839, ""AppleScript"": 668}",GNU General Public License v2.0,24,9,"[neuroscience, psychophysics-toolbox, visual-stimuli, labjack, matlab, ptb, spike, lfp, eyelink, plexon]",24,1,38,1,1,136,139,6614045,38,6614045 10.5281/zenodo.1109685,10.5281/zenodo.1109684,1,dataset,,6,,,,,,,,5,23,6,5,23,23,870942966,23,870942966 10.5281/zenodo.11120,,1,dataset,,6,,,,,,,,6,59,6,6,59,62,7907289996,62,7907289996 10.5281/zenodo.1112519,10.5281/zenodo.1112518,1,software,https://github.com/marshallward/f90nml,2,33,"{""Python"": 118394, ""TeX"": 4872, ""Shell"": 730}",Apache License 2.0,59,8,"[python, fortran, namelist, parser]",59,1,11,9,3,84,99,653774,11,122800 10.5281/zenodo.11126,,1,software,https://github.com/accaldwell/coffee_analysis,1,2,"{""Shell"": 26574, ""Python"": 7358, ""R"": 5796}",,0,1,[],0,1,28,1,1,28,28,16126,28,16126 10.5281/zenodo.1112635,10.5281/zenodo.1112634,1,software,https://github.com/AviranLab/patteRNA,0,1,"{""Python"": 145321}","BSD 2-Clause ""Simplified"" License",8,3,[],8,0,9,0,0,15,15,0,9,0 10.5281/zenodo.11136,,1,software,https://github.com/F1000Research/pagal,1,0,{},,0,1,[],0,1,51,1,1,51,53,4960155,53,4960155 10.5281/zenodo.1116997,10.5281/zenodo.1116996,1,video,,9,,,,,,,,8,53,9,8,53,55,8012475378,55,8012475378 10.5281/zenodo.1117007,10.5281/zenodo.1117006,1,video,,31,,,,,,,,21,50,31,21,50,51,27746962517,51,27746962517 10.5281/zenodo.1117009,10.5281/zenodo.1117008,1,video,,10,,,,,,,,6,32,10,6,32,32,5740414990,32,5740414990 10.5281/zenodo.1117011,10.5281/zenodo.1117010,1,video,,117,,,,,,,,20,17,117,20,17,17,66014029809,17,66014029809 10.5281/zenodo.1117017,10.5281/zenodo.1117016,1,video,,116,,,,,,,,19,17,116,19,17,17,28841262236,17,28841262236 10.5281/zenodo.1117244,10.5281/zenodo.1117243,1,software,https://github.com/ropensci/cleanEHR,0,18,"{""R"": 114185, ""TeX"": 4249, ""C++"": 3251, ""Shell"": 946, ""Makefile"": 792}",GNU General Public License v3.0,35,13,"[electronic-health-record, healthcare, big-data, critical-care, intensive-care, r, rstats, r-package]",35,0,19,0,0,19,19,0,19,0 10.5281/zenodo.1117325,10.5281/zenodo.1117324,1,software,https://github.com/scarrazza/fiatlux,0,0,"{""C++"": 45810, ""Fortran"": 33168, ""CMake"": 2755, ""Shell"": 1517}",GNU Affero General Public License v3.0,0,1,[],0,0,22,0,0,22,24,0,24,0 10.5281/zenodo.1117423,10.5281/zenodo.801899,1,software,https://github.com/leftygray/Cascade_Incidence,1,0,"{""R"": 33177}",MIT License,0,1,"[epidemiology, hiv, australia, infectious-diseases, modeling, data-analysis, paper]",0,1,18,1,1,18,20,699143,18,699143 10.5281/zenodo.1117836,10.5281/zenodo.1117824,1,dataset,https://github.com/archidart/F1000_paper_data,7,0,"{""R"": 14532}",,0,1,[],0,7,82,7,7,84,86,10660118,84,10660118 10.5281/zenodo.1117837,10.5281/zenodo.835163,1,software,https://github.com/RodentDataAnalytics/mwm-ml-gen,4,3,"{""MATLAB"": 637344}",GNU General Public License v3.0,2,5,[],2,3,44,6,3,54,71,81279438,58,54095980 10.5281/zenodo.1117842,10.5281/zenodo.1117841,1,dataset,,4,,,,,,,,4,25,4,4,25,26,25551128,26,25551128 10.5281/zenodo.1117859,10.5281/zenodo.1117858,1,dataset,,3,,,,,,,,3,12,55,39,198,228,67933236128,15,1172026704 10.5281/zenodo.1117864,10.5281/zenodo.1117863,1,software,https://github.com/archidart/archidart,2,1,"{""R"": 360067}",GNU General Public License v2.0,0,1,[],0,1,31,2,1,31,31,4911156,31,4911156 10.5281/zenodo.1118152,10.5281/zenodo.1053774,1,dataset,,16,,,,,,,,12,83,21,14,93,100,34857677,89,27232029 10.5281/zenodo.1118280,10.5281/zenodo.1118279,1,publication,,1,,,,,,,,1,8,1,1,8,8,3800939771,8,3800939771 10.5281/zenodo.1118977,10.5281/zenodo.1118977,1,dataset,,78,,,,,,,,58,37,78,58,37,40,119800404,40,119800404 10.5281/zenodo.1119091,10.5281/zenodo.1119090,1,software,,8,,,,,,,,5,21,8,5,21,23,132876,23,132876 10.5281/zenodo.1119131,10.5281/zenodo.1119130,1,dataset,,3,,,,,,,,3,89,3,3,89,100,380169,100,380169 10.5281/zenodo.1119134,10.5281/zenodo.1119134,1,software,https://github.com/e3bo/2017distance,4,0,"{""R"": 84026, ""Makefile"": 2853, ""Shell"": 986}",MIT License,0,1,[],0,4,33,4,4,35,35,969672,33,969672 10.5281/zenodo.1120421,10.5281/zenodo.1120420,1,software,https://github.com/GRIFFINCollaboration/Geant4GammaGammaAngularCorrelations10.01.p01,5,5,"{""C++"": 315770, ""CMake"": 2187, ""C"": 652, ""Makefile"": 293, ""Shell"": 197}",MIT License,2,6,[],2,3,24,5,3,24,28,8432050,28,8432050 10.5281/zenodo.1120440,10.5281/zenodo.1120439,1,software,https://github.com/w2naf/eclipse_calculator,0,2,"{""Python"": 33670, ""Jupyter Notebook"": 29768, ""PHP"": 176}",GNU General Public License v3.0,1,1,[],1,0,4,0,0,4,4,0,4,0 10.5281/zenodo.1120693,10.5281/zenodo.1120442,1,software,https://github.com/AviranLab/SLEQ,2,0,"{""C++"": 186298, ""R"": 9806, ""Objective-C"": 307}",,0,2,[],0,2,21,2,2,24,24,2098228,21,2098228 10.5281/zenodo.11217,,1,publication,,185,,,,,,,,173,594,185,173,594,605,56772245,605,56772245 10.5281/zenodo.1122533,10.5281/zenodo.1122532,1,software,,0,,,,,,,,0,6,0,0,6,6,0,6,0 10.5281/zenodo.1124944,10.5281/zenodo.1124944,1,software,https://github.com/psolymos/racocos,1,0,{},,0,1,[],0,1,12,1,1,12,14,1643995,14,1643995 10.5281/zenodo.1127667,10.5281/zenodo.1127666,1,dataset,,47,,,,,,,,18,39,47,18,39,83,1334291,83,1334291 10.5281/zenodo.1127682,10.5281/zenodo.1127681,1,software,https://github.com/dsrim/powerdensity3d,3,0,"{""MATLAB"": 168692, ""M"": 431}",MIT License,0,1,[],0,2,7,10,5,25,25,797127,7,210366 10.5281/zenodo.1127687,10.5281/zenodo.1127686,1,software,https://github.com/gmorriso/GENs-code,7,0,"{""C++"": 47276}",,0,1,[],0,6,41,7,6,41,41,231553,41,231553 10.5281/zenodo.11278,,1,software,,1,,,,,,,,1,29,1,1,29,30,2160456,30,2160456 10.5281/zenodo.11280,,1,dataset,,1,,,,,,,,1,45,1,1,45,46,739187848,46,739187848 10.5281/zenodo.11281,,1,software,,1,,,,,,,,1,27,1,1,27,29,1366468,29,1366468 10.5281/zenodo.1131976,10.5281/zenodo.1131975,1,publication,,8,,,,,,,,8,24,8,8,24,24,6453392,24,6453392 10.5281/zenodo.1132309,10.5281/zenodo.1132308,1,publication,,20,,,,,,,,20,54,20,20,54,55,4834980,55,4834980 10.5281/zenodo.1133429,10.5281/zenodo.1133428,1,software,https://github.com/jenniesuz/tsetse_geo2017,5,0,"{""R"": 27722}",,0,1,[],0,4,13,5,4,13,15,2234875,15,2234875 10.5281/zenodo.1133435,10.5281/zenodo.1133434,1,software,https://github.com/archidart/archishiny,3,0,"{""R"": 59041}",GNU General Public License v3.0,0,1,[],0,2,74,3,2,74,74,7907322,74,7907322 10.5281/zenodo.1133730,10.5281/zenodo.1133729,1,publication,,,,,,,,,,,,,,,,,, 10.5281/zenodo.1133782,10.5281/zenodo.1133781,1,software,https://github.com/drsteve/LANLGeoMag,2,11,"{""C"": 5151015, ""Python"": 710721, ""Fortran"": 345587, ""Objective-C"": 212089, ""C++"": 49056, ""M4"": 33709, ""Perl"": 29075, ""Makefile"": 21872, ""HTML"": 8935, ""GLSL"": 6518, ""sed"": 954, ""Shell"": 667}",Other,5,5,[],5,2,18,39,19,52,61,13933041013,20,714286370 10.5281/zenodo.1133970,10.5281/zenodo.1003420,1,software,https://github.com/coq/coq,104,339,"{""OCaml"": 10188264, ""Coq"": 8122305, ""Shell"": 162052, ""TeX"": 120353, ""C"": 73417, ""Makefile"": 43208, ""Python"": 42203, ""Verilog"": 28528, ""NSIS"": 26177, ""Scheme"": 23322, ""Standard ML"": 22748, ""Batchfile"": 22187, ""Nix"": 11523, ""Emacs Lisp"": 10974, ""CSS"": 7040, ""C++"": 5855, ""Dockerfile"": 2548, ""JavaScript"": 2362, ""sed"": 116}",GNU Lesser General Public License v2.1,2101,96,"[proof-assistant, coq, theorem-proving, dependent-types]",2101,93,51,322,261,429,596,784503184,53,272714782 10.5281/zenodo.1133980,10.5281/zenodo.1133979,1,presentation,https://github.com/gregnordin/2017-MicroTAS-Keynote-Presentation,4,0,{},Other,0,1,[],0,3,9,4,3,9,9,236035160,9,236035160 10.5281/zenodo.1134085,10.5281/zenodo.1134084,1,software,https://github.com/baumlab/Claar_ElNinoMetaAnalysis,3,0,"{""R"": 56628}",,1,4,[],1,2,13,3,2,13,13,58733328,13,58733328 10.5281/zenodo.1134133,10.5281/zenodo.1134131,1,software,https://github.com/jaredleekatzman/DeepSurv,14,66,"{""Jupyter Notebook"": 121500, ""Python"": 70877, ""Dockerfile"": 559}",MIT License,168,23,[],168,13,167,17,13,171,175,35756587,170,35707168 10.5281/zenodo.1134175,10.5281/zenodo.1134174,1,software,https://github.com/BeauJoh/Oclgrind,5,2,"{""C++"": 749779, ""C"": 230028, ""CMake"": 18303, ""Python"": 4761, ""Makefile"": 1290, ""Batchfile"": 940, ""Shell"": 863}",Other,0,1,[],0,4,33,5,4,33,37,1643945,37,1643945 10.5281/zenodo.1134853,10.5281/zenodo.1134852,1,software,https://github.com/filip-jezek/full-blood-acidbase,6,0,"{""Modelica"": 217848}",GNU General Public License v3.0,0,2,[],0,5,17,6,5,17,21,30150438,21,30150438 10.5281/zenodo.1134907,10.5281/zenodo.1134906,1,software,https://github.com/Zhong-Lab-UCSD/Genomic-Interactive-Visualization-Engine,0,26,"{""JavaScript"": 590259, ""HTML"": 508912, ""PHP"": 120796, ""C++"": 78839, ""Shell"": 77958, ""Python"": 4875, ""CSS"": 3220}",Apache License 2.0,92,9,"[genomics-visualization, javascript, epigenetic-data, genomic-interactions]",92,0,17,0,0,39,40,0,17,0 10.5281/zenodo.1135108,10.5281/zenodo.1135107,1,software,https://github.com/thomasgibson/scpc,2,0,"{""Python"": 58140}",MIT License,1,2,[],1,1,1,7,5,24,25,124478,1,32386 10.5281/zenodo.1135245,10.5281/zenodo.1135245,1,software,https://github.com/luizfelippesr/galmag,19,0,"{""Jupyter Notebook"": 1088368, ""Python"": 135493}",GNU General Public License v3.0,1,2,"[galactic-magnetic-fields, astrophysics, mean-field-dynamo, python]",1,19,177,34,23,207,660,17310719,389,16246634 10.5281/zenodo.1135261,10.5281/zenodo.1135260,1,software,https://github.com/jrka/pyradexnest,4,1,"{""Python"": 133789, ""TeX"": 1002}",,3,1,[],3,3,3,4,3,3,3,198624,3,198624 10.5281/zenodo.1135372,10.5281/zenodo.1135371,1,dataset,,16,,,,,,,,9,56,16,9,56,57,726267058,57,726267058 10.5281/zenodo.1136198,10.5281/zenodo.1000741,1,software,https://github.com/Jakobovski/free-spoken-digit-dataset,8,117,"{""Python"": 14253}",,214,16,"[dataset, spoken-language, mnist, machine-learning, speech-recognition, audio, spoken-digits]",214,6,106,142,126,621,724,1232593484,108,61029848 10.5281/zenodo.1136202,10.5281/zenodo.1136201,1,dataset,,22,,,,,,,,15,76,22,15,76,84,207057173076,84,207057173076 10.5281/zenodo.1136287,10.5281/zenodo.1136287,1,software,https://github.com/ancolli/concLaminarTurbulentFoam,2,0,"{""C++"": 25861, ""C"": 5049}",MIT License,0,1,"[openfoam, mass-transport, electrochemistry]",0,1,3,2,1,3,3,41990,3,41990 10.5281/zenodo.1137305,10.5281/zenodo.1137304,1,software,https://github.com/rangrisme/lubrication,13,0,"{""Mathematica"": 94325, ""TeX"": 37881, ""C++"": 13346, ""MATLAB"": 10154}",,0,1,[],0,12,84,13,12,84,88,3284385,88,3284385 10.5281/zenodo.1137702,10.5281/zenodo.832278,1,dataset,,11,,,,,,,,10,48,12,11,59,62,1112869493,49,1018680091 10.5281/zenodo.1137825,10.5281/zenodo.1137824,1,software,https://github.com/Simon-Coetzee/StatePaintR,2,2,"{""R"": 80281}",,7,3,[],7,1,17,2,1,17,22,5243494,22,5243494 10.5281/zenodo.1137872,10.5281/zenodo.1137871,1,software,,3,,,,,,,,3,36,3,3,36,36,147126,36,147126 10.5281/zenodo.11395,,1,software,https://github.com/ocefpaf/python-seawater,3,0,"{""MATLAB"": 124656, ""Python"": 97514}",Other,0,1,[],0,3,89,3,3,89,95,5350149,95,5350149 10.5281/zenodo.11404,,1,dataset,,1,,,,,,,,1,89,1,1,89,91,23040,91,23040 10.5281/zenodo.11430,,1,publication,,9,,,,,,,,6,16,9,6,16,17,57836547,17,57836547 10.5281/zenodo.1144120,10.5281/zenodo.1144119,1,dataset,,1,,,,,,,,1,14,1,1,14,14,89956,14,89956 10.5281/zenodo.1145915,10.5281/zenodo.1145914,1,software,https://github.com/tleonardi/tapRNAs,2,0,"{""Shell"": 162714, ""R"": 35624, ""Makefile"": 8964, ""HTML"": 2367}",,0,1,[],0,1,1,12,7,36,38,190484348,1,31748338 10.5281/zenodo.1146037,10.5281/zenodo.1002215,1,software,https://github.com/mloranty/lichen_pft,2,1,"{""R"": 29997}",,0,2,[],0,1,4,2,1,6,7,10905162,4,10905162 10.5281/zenodo.1146125,10.5281/zenodo.1146124,1,dataset,,5,,,,,,,,4,44,5,4,44,46,7982434111,46,7982434111 10.5281/zenodo.1146138,10.5281/zenodo.1146137,1,dataset,,1,,,,,,,,1,30,1,1,30,33,1982574934,33,1982574934 10.5281/zenodo.1146146,10.5281/zenodo.1146145,1,dataset,,63,,,,,,,,12,34,63,12,34,41,81181070498,41,81181070498 10.5281/zenodo.1146183,10.5281/zenodo.596235,1,software,https://github.com/oemof/oemof,0,53,"{""Python"": 390771}",GNU General Public License v3.0,124,34,"[energy, energy-system, modelling, modelling-framework]",124,0,18,20,16,206,280,11421486,18,0 10.5281/zenodo.1146566,10.5281/zenodo.1146566,1,dataset,,346,,,,,,,,283,364,1660,1219,1657,2182,272411443,439,60560125 10.5281/zenodo.1146653,10.5281/zenodo.1146652,1,software,https://github.com/TimVanMourik/Porcupine,3,12,"{""C++"": 233209, ""Python"": 14559, ""QMake"": 6409, ""MATLAB"": 4998, ""Dockerfile"": 613, ""M"": 206, ""Shell"": 133}",GNU General Public License v3.0,49,13,[],49,2,20,3,2,20,25,133339695,25,133339695 10.5281/zenodo.1146705,10.5281/zenodo.596700,1,software,https://github.com/sdss/marvin,2,10,"{""Python"": 1491008, ""JavaScript"": 217760, ""CSS"": 210343, ""TSQL"": 154701, ""SQLPL"": 141212, ""HTML"": 69253, ""PLpgSQL"": 1577, ""Shell"": 1150}","BSD 3-Clause ""New"" or ""Revised"" License",30,11,"[astronomy, manga, marvin, sdss]",30,1,31,59,9,197,232,1120894901,31,36205974 10.5281/zenodo.1146747,10.5281/zenodo.1146746,1,publication,,13,,,,,,,,12,31,13,12,31,32,8000382,32,8000382 10.5281/zenodo.1146898,10.5281/zenodo.1146897,1,publication,,7,,,,,,,,6,8,7,6,8,8,4884824,8,4884824 10.5281/zenodo.1148792,10.5281/zenodo.1148791,1,software,https://github.com/zackramjan/statehubweb,3,1,"{""Java"": 63871, ""HTML"": 3494, ""CSS"": 1572}",,0,1,[],0,2,9,3,2,9,11,214476192,11,214476192 10.5281/zenodo.1148798,10.5281/zenodo.1148797,1,software,https://github.com/swarris/Pacasus,3,1,"{""Python"": 31667}",MIT License,6,2,[],6,2,13,8,4,17,19,2911427,14,1091367 10.5281/zenodo.1148959,10.5281/zenodo.1148958,1,dataset,,58,,,,,,,,47,63,58,47,63,68,215715572,68,215715572 10.5281/zenodo.1149125,10.5281/zenodo.1149124,1,dataset,,7,,,,,,,,7,14,7,7,14,15,4503184,15,4503184 10.5281/zenodo.1149690,10.5281/zenodo.1149689,1,software,https://github.com/pseyfert/tmva-branch-adder,2,2,"{""C++"": 25991, ""Python"": 4743, ""CMake"": 4482, ""Makefile"": 2286, ""C"": 132}",GNU General Public License v3.0,1,1,[],1,1,20,10,4,23,25,379066,20,73538 10.5281/zenodo.1149746,10.5281/zenodo.1149745,1,dataset,,2,,,,,,,,2,53,2,2,53,55,38785296036,55,38785296036 10.5281/zenodo.11517,,1,software,https://github.com/Parallel-in-Time/PFASST,0,12,"{""C++"": 549156, ""CMake"": 29333, ""Emacs Lisp"": 6482, ""Shell"": 136}",Other,17,15,[],17,0,12,0,0,12,12,0,12,0 10.5281/zenodo.1153887,10.5281/zenodo.1153886,1,dataset,,17,,,,,,,,10,27,17,10,27,28,8975714,28,8975714 10.5281/zenodo.1154124,10.5281/zenodo.1154124,1,software,https://github.com/enricoferrero/bioconductor-regulatory-genomics-workflow,0,0,"{""HTML"": 2153669, ""TeX"": 193610, ""R"": 506}",Creative Commons Attribution 4.0 International,1,1,"[bioconductor, r, rstats, genomics, bioinformatics]",1,0,19,0,0,36,41,0,21,0 10.5281/zenodo.1154149,10.5281/zenodo.1051064,1,software,https://github.com/wadpac/GGIR,5,14,"{""R"": 534836, ""C++"": 3037, ""C"": 503}",GNU Lesser General Public License v3.0,20,9,[],20,4,17,69,15,3900,6678,159689408,17,16982235 10.5281/zenodo.1154235,10.5281/zenodo.1154124,1,software,https://github.com/enricoferrero/bioconductor-regulatory-genomics-workflow,0,0,"{""HTML"": 2153669, ""TeX"": 193610, ""R"": 506}",Creative Commons Attribution 4.0 International,1,1,"[bioconductor, r, rstats, genomics, bioinformatics]",1,0,15,0,0,36,41,0,17,0 10.5281/zenodo.1154779,10.5281/zenodo.1154779,1,dataset,,2,,,,,,,,2,17,2,2,17,19,305101816,19,305101816 10.5281/zenodo.1154840,10.5281/zenodo.1154839,1,dataset,,43,,,,,,,,40,188,43,40,188,198,6346150227,198,6346150227 10.5281/zenodo.1154914,10.5281/zenodo.1154913,1,dataset,,13,,,,,,,,12,29,1831,159,562,622,7449713292203,29,52892557277 10.5281/zenodo.1155649,10.5281/zenodo.1155649,1,software,https://github.com/jogwalker/parasite_transmission_Q0,3,0,"{""R"": 30461}",MIT License,0,0,[],0,2,12,3,2,12,12,40860,12,40860 10.5281/zenodo.1155830,10.5281/zenodo.1155829,1,software,,3,,,,,,,,3,8,3,3,8,8,5751924,8,5751924 10.5281/zenodo.1156331,10.5281/zenodo.1143694,1,software,https://github.com/doricke/IBio,2,0,"{""JavaScript"": 968624, ""Ruby"": 844249, ""HTML"": 278248, ""CSS"": 33252, ""CoffeeScript"": 704, ""Batchfile"": 290}",Other,1,3,[],1,1,7,4,2,8,8,279392764,7,139896314 10.5281/zenodo.1156412,10.5281/zenodo.1156411,1,software,https://github.com/nell-byler/cloudyfsps,4,2,"{""Python"": 118186, ""Shell"": 511}","BSD 3-Clause ""New"" or ""Revised"" License",7,2,[],7,2,25,4,2,25,25,1703580,25,1703580 10.5281/zenodo.1156551,10.5281/zenodo.1156550,1,software,https://github.com/rdejonge/genomics,4,0,"{""Perl"": 92408, ""R"": 4361}",,1,2,[],1,3,13,4,3,13,14,115780,14,115780 10.5281/zenodo.1156863,10.5281/zenodo.1156862,1,dataset,,46,,,,,,,,36,132,46,36,132,137,18751474914,137,18751474914 10.5281/zenodo.1157043,10.5281/zenodo.1157043,1,software,,19,,,,,,,,16,63,50,37,171,205,1700293534,75,646126103 10.5281/zenodo.1157173,10.5281/zenodo.1157172,1,software,https://github.com/sepandhaghighi/pycm,17,65,"{""Python"": 277190, ""HTML"": 57991, ""TeX"": 6416, ""Shell"": 382, ""Batchfile"": 321}",MIT License,702,32,"[machine-learning, confusion-matrix, matrix, statistics, statistical-analysis, accuracy, ml, ai, mathematics, data-mining, data-analysis, classification, classifier, data-science, data, neural-network, multiclass-classification, deep-learning, artificial-intelligence, deeplearning]",702,11,200,214,36,315,337,65981781,204,694229 10.5281/zenodo.1157183,10.5281/zenodo.1157182,1,software,https://github.com/MSU-STLab/METtester,5,1,"{""Java"": 11809}",,0,2,[],0,4,23,5,4,23,27,2612720,27,2612720 10.5281/zenodo.11573,,1,dataset,,26,,,,,,,,15,77,26,15,77,78,28716103,78,28716103 10.5281/zenodo.1157306,10.5281/zenodo.1157305,1,video,,124,,,,,,,,108,270,124,108,270,291,13907278652,291,13907278652 10.5281/zenodo.1157308,10.5281/zenodo.1157307,1,software,https://github.com/giacomov/gv_significance,4,0,"{""Python"": 15341}","BSD 3-Clause ""New"" or ""Revised"" License",1,2,[],1,3,2,4,3,2,3,45880,3,45880 10.5281/zenodo.11576,,1,dataset,,6,,,,,,,,6,69,6,6,69,74,949572,74,949572 10.5281/zenodo.1157938,10.5281/zenodo.1157937,1,dataset,,190,,,,,,,,100,286,190,100,286,300,220153524400,300,220153524400 10.5281/zenodo.1157967,10.5281/zenodo.1157966,1,software,,6,,,,,,,,4,27,6,4,27,30,19146,30,19146 10.5281/zenodo.1157975,10.5281/zenodo.1157974,1,publication,,4,,,,,,,,4,15,4,4,15,15,7889052,15,7889052 10.5281/zenodo.1158027,10.5281/zenodo.1158026,1,dataset,,4,,,,,,,,3,43,4,3,43,44,8250152,44,8250152 10.5281/zenodo.1158068,10.5281/zenodo.593895,1,software,https://github.com/fredRos/pypmc,1,6,"{""Python"": 358152, ""Makefile"": 6999}",GNU General Public License v2.0,26,3,"[clustering, python, variational-bayes, population-monte-carlo, markov-chain, importance-sampling, cython]",26,1,12,8,4,25,25,1317303,12,163708 10.5281/zenodo.1158301,10.5281/zenodo.1158300,1,dataset,,193,,,,,,,,148,1015,193,148,1015,1073,855961059235,1073,855961059235 10.5281/zenodo.1158421,10.5281/zenodo.1158420,1,dataset,,34,,,,,,,,10,76,34,10,76,80,19284871927,80,19284871927 10.5281/zenodo.1158524,10.5281/zenodo.1158523,1,dataset,,47,,,,,,,,37,86,47,37,86,91,551223191,91,551223191 10.5281/zenodo.1158575,10.5281/zenodo.891158,1,software,,1,,,,,,,,1,17,6,6,41,46,1712845,18,280200 10.5281/zenodo.1158752,10.5281/zenodo.596823,1,software,https://github.com/reichlab/annual-predictions-paper,61,0,"{""TeX"": 69494, ""R"": 39813, ""HTML"": 28690, ""Shell"": 971}",GNU Lesser General Public License v3.0,2,2,[],2,38,121,70,41,134,140,2896402108,125,2442866268 10.5281/zenodo.11589,,1,software,https://github.com/gw0/nets-nodegroups,0,0,"{""C++"": 39678, ""Makefile"": 3272}",GNU Affero General Public License v3.0,2,1,[],2,0,4,0,0,4,4,0,4,0 10.5281/zenodo.1160410,10.5281/zenodo.1160409,1,dataset,,71,,,,,,,,56,382,71,56,382,422,68358704292,422,68358704292 10.5281/zenodo.1160648,10.5281/zenodo.1160648,1,dataset,,1,,,,,,,,1,30,10,2,33,35,115282,31,24428 10.5281/zenodo.1160661,10.5281/zenodo.1005941,1,software,https://github.com/clauswilke/proteinER,2,0,"{""Python"": 48115, ""HyPhy"": 4368, ""R"": 1178}",MIT License,5,5,[],5,2,36,2,2,60,62,1038000,37,1038000 10.5281/zenodo.1160697,10.5281/zenodo.1160696,1,software,https://github.com/ropensci/drake,12,85,"{""R"": 831346, ""Shell"": 3501, ""TeX"": 1198, ""C"": 958}",GNU General Public License v3.0,876,31,"[reproducibility, high-performance-computing, r, data-science, drake, makefile, pipeline, workflow, reproducible-research, rstats, r-package, ropensci, peer-reviewed]",876,7,52,206,33,314,332,619198813,52,53564028 10.5281/zenodo.1160714,10.5281/zenodo.593231,1,software,https://github.com/wavefronthsaping/ALP4lib,15,6,"{""Python"": 44341}",MIT License,8,0,[],8,14,186,20,17,226,243,304172,197,228375 10.5281/zenodo.1161149,10.5281/zenodo.596622,1,software,https://github.com/choderalab/openmmtools,0,25,"{""Python"": 1771496, ""Shell"": 3673, ""Batchfile"": 139}",MIT License,50,24,"[openmm, molecular-dynamics, alchemical-free-energy-calculations, integrators, free-energy-calculations, molecular-simulations, python, mcmc, markov-chain-monte-carlo, replica-exchange]",50,0,9,30,11,94,115,347872221,9,0 10.5281/zenodo.1161232,10.5281/zenodo.1161232,1,software,,4,,,,,,,,2,9,4,2,9,10,7046688,10,7046688 10.5281/zenodo.1161276,10.5281/zenodo.1161275,1,software,https://github.com/srmulcahy/2018-mulcahy-franciscan,2,0,"{""Jupyter Notebook"": 460567}",,0,1,[],0,2,25,2,2,25,27,2603776,27,2603776 10.5281/zenodo.1161294,10.5281/zenodo.1161293,1,publication,,8,,,,,,,,6,16,8,6,16,17,26096,17,26096 10.5281/zenodo.1161353,10.5281/zenodo.1161352,1,publication,,12,,,,,,,,10,32,12,10,32,52,6459384,52,6459384 10.5281/zenodo.1161355,10.5281/zenodo.1161354,1,publication,,15,,,,,,,,13,45,15,13,45,64,5963940,64,5963940 10.5281/zenodo.1161723,10.5281/zenodo.1161722,1,publication,,4,,,,,,,,4,25,4,4,25,25,32583820,25,32583820 10.5281/zenodo.11619,10.5281/zenodo.592707,1,software,https://github.com/karmel/homer-idr,0,7,"{""R"": 113488, ""Python"": 38308, ""Shell"": 6728}",,10,1,[],10,0,35,0,0,93,95,0,35,0 10.5281/zenodo.1161970,10.5281/zenodo.1161969,1,software,https://github.com/tcompa/Laughlin-Metropolis,0,0,"{""Python"": 11966, ""TeX"": 366}",MIT License,1,1,"[quantum-mechanics, many-body-physics, metropolis-monte-carlo, fractional-quantum-hall]",1,0,1,1,1,30,35,55899,1,0 10.5281/zenodo.1162154,10.5281/zenodo.1162153,1,dataset,,37,,,,,,,,34,67,37,34,67,68,1004143,68,1004143 10.5281/zenodo.1162326,10.5281/zenodo.597753,1,software,https://github.com/ICB-DCM/PESTO,1,8,"{""MATLAB"": 568973, ""Fortran"": 74628, ""M"": 195}","BSD 3-Clause ""New"" or ""Revised"" License",15,5,"[parameter-estimation, optimization, matlab, uncertainty-quantification, profile-likelihood, systems-biology]",15,1,6,3,3,35,36,14670498,6,5131778 10.5281/zenodo.1162327,10.5281/zenodo.597928,1,software,https://github.com/ICB-DCM/AMICI,16,10,"{""C++"": 1327148, ""MATLAB"": 436747, ""Python"": 344319, ""Jupyter Notebook"": 262170, ""HTML"": 173356, ""CMake"": 62897, ""TeX"": 50725, ""CSS"": 27078, ""C"": 24621, ""Shell"": 17861, ""PowerShell"": 2315}",Other,20,6,"[differentialequations, sensitivities, matlab, simulation, adjoint-sensitivities, forward-sensitivities, sbml, systemsbiology, computational-biology, cvode, python, cpp, kinetic-modeling, mechanistic-models]",20,11,5,348,61,128,190,3425689895,6,154674960 10.5281/zenodo.1162340,10.5281/zenodo.1162339,1,publication,,30,,,,,,,,28,99,30,28,99,106,3167864820,106,3167864820 10.5281/zenodo.1162653,10.5281/zenodo.1162652,1,publication,,7,,,,,,,,5,38,7,5,38,40,5218901499,40,5218901499 10.5281/zenodo.1162670,10.5281/zenodo.1073696,1,software,https://github.com/debruine/webmorph,307,4,"{""JavaScript"": 3324609, ""PHP"": 1642995, ""Java"": 547531, ""CSS"": 137719, ""HTML"": 59522, ""MATLAB"": 13696}",MIT License,25,4,"[faces, morphing, transforming, batch-processing]",25,103,1759,311,106,4184,4780,22400318894,1912,22299476110 10.5281/zenodo.1162674,10.5281/zenodo.1162673,1,software,,1,,,,,,,,1,26,1,1,26,32,657460,32,657460 10.5281/zenodo.1162703,10.5281/zenodo.1162702,1,software,,23,,,,,,,,20,58,23,20,58,65,26761167,65,26761167 10.5281/zenodo.1162822,10.5281/zenodo.1162821,1,dataset,,16,,,,,,,,14,12,16,14,12,13,31359974,13,31359974 10.5281/zenodo.1163024,10.5281/zenodo.1163002,1,software,https://github.com/Miladiouss/LensFlow,2,2,"{""Mathematica"": 9752610, ""Jupyter Notebook"": 138948}",GNU Lesser General Public License v3.0,10,1,[],10,1,3,4,2,4,4,33837790,3,16921676 10.5281/zenodo.1163390,10.5281/zenodo.1154873,1,software,https://github.com/thomasgibson/tabula-rasa,1,0,"{""Python"": 208788, ""TeX"": 5710}",MIT License,1,2,[],1,1,8,17,15,53,55,18178369,8,3095393 10.5281/zenodo.1163558,10.5281/zenodo.1162946,1,software,https://github.com/MathCancer/PhysiCell-EMEWS,4,2,"{""C++"": 1000953, ""Python"": 13617, ""Shell"": 12496, ""Makefile"": 8727, ""Swift"": 1991}",,2,4,[],2,3,23,4,3,27,27,2114764,23,2114764 10.5281/zenodo.1163620,10.5281/zenodo.1163619,1,software,https://github.com/RPGroup-PBoC/mwc_induction,5,0,"{""Jupyter Notebook"": 22750655, ""Python"": 54900}",MIT License,0,5,[],0,4,89,5,4,89,92,2595480485,92,2595480485 10.5281/zenodo.1164133,10.5281/zenodo.1164132,1,dataset,,8,,,,,,,,6,18,8,6,18,19,217000,19,217000 10.5281/zenodo.1164252,10.5281/zenodo.1164251,1,dataset,,5,,,,,,,,5,19,5,5,19,21,10222090,21,10222090 10.5281/zenodo.1164290,10.5281/zenodo.877168,1,software,https://github.com/boutiques/boutiques,6,34,"{""Python"": 342986, ""Common Workflow Language"": 4974, ""Shell"": 910, ""Dockerfile"": 699}",Other,32,16,[],32,3,9,92,17,154,172,11970293,9,583218 10.5281/zenodo.1164783,10.5281/zenodo.1164782,1,dataset,https://github.com/lessersunda/lexirumah-data,8,2,"{""Jupyter Notebook"": 1244653, ""Python"": 140992, ""TeX"": 61499}",,0,5,[],0,5,13,50,20,203,276,92559537,13,9829616 10.5281/zenodo.11648,,1,software,,3,,,,,,,,3,21,3,3,21,25,3697620,25,3697620 10.5281/zenodo.1164945,10.5281/zenodo.1164944,1,publication,,,,,,,,,,,,,,,,,, 10.5281/zenodo.1164951,10.5281/zenodo.1164950,1,publication,,2,,,,,,,,2,2,2,2,2,2,479964,2,479964 10.5281/zenodo.1165084,10.5281/zenodo.1165083,1,software,https://github.com/xinglunju/tdviz,0,6,"{""Python"": 29330}",MIT License,9,5,[],9,0,15,0,0,15,15,0,15,0 10.5281/zenodo.1165402,10.5281/zenodo.1165401,1,software,https://github.com/emma-holmes/Speech-Recording-Videos,3,0,"{""MATLAB"": 21984}",MIT License,0,0,"[matlab, speech-recording-videos, speech, karaoke]",0,3,20,3,3,20,21,827145,21,827145 10.5281/zenodo.1165986,10.5281/zenodo.1162749,1,software,https://github.com/stain/arcp-py,0,0,"{""Python"": 48089}",Apache License 2.0,1,2,[],1,0,19,0,0,21,21,0,19,0 10.5281/zenodo.1165999,10.5281/zenodo.1137818,1,dataset,,82,,,,,,,,55,121,112,70,212,226,17044157864,130,12856339783 10.5281/zenodo.1166131,10.5281/zenodo.1166130,1,software,https://github.com/ai4iacts/hexagdly,1,9,"{""Jupyter Notebook"": 4080314, ""Python"": 144709}",MIT License,33,4,"[pytorch, deep-learning, hexagonal-grids]",33,1,57,7,4,75,84,18254439,61,1010219 10.5281/zenodo.1167635,10.5281/zenodo.596442,1,software,https://github.com/feltor-dev/feltor,0,12,"{""C++"": 1829763, ""Cuda"": 1174986, ""TeX"": 134858, ""JavaScript"": 36489, ""Makefile"": 30242, ""C"": 2004, ""Python"": 1868, ""Shell"": 1687}",MIT License,9,4,"[discontinuous-galerkin, gpu, openmp, computational-physics, computational-fluid-dynamics, numerical-simulations, plasma-turbulence, cuda, c-plus-plus, numerical-methods, parallel-computing, parallel-algorithm, mpi]",9,0,10,3,2,87,103,3813576,12,0 10.5281/zenodo.1167664,10.5281/zenodo.1167663,1,software,https://github.com/patzaw/BED,3,1,"{""R"": 280016}",GNU General Public License v3.0,4,2,[],4,2,7,23,9,34,37,102610434,7,8717070 10.5281/zenodo.1168228,10.5281/zenodo.1168227,1,video,,35,,,,,,,,25,70,35,25,70,81,32328770358,81,32328770358 10.5281/zenodo.1168454,10.5281/zenodo.1168454,1,dataset,,126,,,,,,,,14,469,382,28,501,529,108630365249,489,67827558417 10.5281/zenodo.1168460,10.5281/zenodo.1035789,1,software,https://github.com/JuliaNLSolvers/Optim.jl,9,126,"{""Julia"": 390288, ""TeX"": 7756, ""Makefile"": 236}",Other,427,32,"[optim, julia, optimization]",427,5,8,132,20,221,241,39580833,10,2368737 10.5281/zenodo.1168496,10.5281/zenodo.1168495,1,other,,0,,,,,,,,0,4,0,0,4,4,0,4,0 10.5281/zenodo.1168577,10.5281/zenodo.1168577,1,dataset,,121,,,,,,,,10,27,1173,43,94,168,56328394344,29,4749448621 10.5281/zenodo.1168790,10.5281/zenodo.1168789,1,dataset,,6,,,,,,,,5,45,6,5,45,46,216226912,46,216226912 10.5281/zenodo.1168860,10.5281/zenodo.775113,1,software,,11,,,,,,,,8,126,17,10,225,270,10928093,149,6330621 10.5281/zenodo.11691,,1,software,https://github.com/mvavalis/Hybrid-numerical-PDE-solvers,0,1,"{""C++"": 205391, ""C"": 53639, ""Shell"": 2587, ""MATLAB"": 407}",,1,2,[],1,0,12,0,0,12,12,0,12,0 10.5281/zenodo.1169306,10.5281/zenodo.1169305,1,dataset,,6,,,,,,,,5,34,6,5,34,38,135374781,38,135374781 10.5281/zenodo.1169361,10.5281/zenodo.1169360,1,dataset,,1245,,,,,,,,860,1954,1245,860,1954,2157,1465403938,2157,1465403938 10.5281/zenodo.1169907,10.5281/zenodo.1169906,1,software,https://github.com/pdebuyl-lab/complex_nanomotors,2,0,"{""Jupyter Notebook"": 925447, ""OpenEdge ABL"": 3412}","BSD 3-Clause ""New"" or ""Revised"" License",0,1,[],0,2,11,2,2,11,11,1445216,11,1445216 10.5281/zenodo.1170531,10.5281/zenodo.1170530,1,software,https://github.com/mbr085/Sparse-Dowker-Nerves,1,0,"{""Python"": 111128}",GNU General Public License v3.0,2,2,[],2,1,9,1,1,9,9,2726795,9,2726795 10.5281/zenodo.1170560,10.5281/zenodo.748695,1,dataset,,0,,,,,,,,0,12,106,48,269,307,1747690087,14,0 10.5281/zenodo.1171106,10.5281/zenodo.1171105,1,publication,,2,,,,,,,,2,13,2,2,13,13,7932,13,7932 10.5281/zenodo.1171157,10.5281/zenodo.1171156,1,dataset,,1,,,,,,,,1,16,1,1,16,17,37244518,17,37244518 10.5281/zenodo.11716,10.5281/zenodo.592628,1,software,https://github.com/fmaguire/Maguire_et_al_2014_supplementals,0,0,{},Apache License 2.0,0,1,[],0,0,5,1,1,10,11,1028635,5,0 10.5281/zenodo.11718,,1,software,https://github.com/bwesterb/ks,0,0,"{""Makefile"": 269626, ""TeX"": 131914, ""Python"": 53320, ""C++"": 30837, ""HTML"": 11537, ""CSS"": 6516, ""CMake"": 312, ""Shell"": 135}",,1,1,"[math, kochen-specker, latex]",1,0,11,0,0,11,11,0,11,0 10.5281/zenodo.1171825,10.5281/zenodo.595204,1,software,https://github.com/fusion-jena/unit-ontology-review,1,1,"{""JavaScript"": 344998, ""HTML"": 5722}",MIT License,3,2,[],3,1,18,6,6,92,119,1261348,27,222748 10.5281/zenodo.1171840,10.5281/zenodo.595202,1,software,https://github.com/fusion-jena/unit-ontology-review-results,0,0,"{""HTML"": 11208318}",,0,3,[],0,0,14,0,0,55,66,0,21,0 10.5281/zenodo.1172136,10.5281/zenodo.820952,1,software,,7,,,,,,,,7,28,8,8,34,40,325716,31,293965 10.5281/zenodo.1172160,10.5281/zenodo.1172159,1,video,,3,,,,,,,,3,58,3,3,58,64,428325288,64,428325288 10.5281/zenodo.1172180,10.5281/zenodo.1172179,1,publication,https://github.com/TeeganI/Symcap,9,0,"{""HTML"": 11054221, ""R"": 52266}",,0,2,[],0,9,49,9,9,49,53,549130113,53,549130113 10.5281/zenodo.1172181,10.5281/zenodo.597802,1,software,https://github.com/jmonlong/epipopsv,1,0,"{""R"": 65652, ""Shell"": 17067}",,0,2,[],0,1,8,1,1,23,24,5990667,9,5990667 10.5281/zenodo.1172193,10.5281/zenodo.1172193,1,software,https://github.com/albansouche/Open-GeoNabla,2,0,"{""C"": 9438135, ""C++"": 2667201, ""MATLAB"": 2163914, ""TeX"": 458424, ""Makefile"": 328743, ""Java"": 277062, ""Fortran"": 171410, ""HTML"": 103473, ""Objective-C"": 99437, ""Cuda"": 82351, ""Ruby"": 51657, ""Roff"": 9481, ""Perl"": 9412, ""CMake"": 7079, ""D"": 5742, ""Shell"": 2351, ""sed"": 1660, ""Awk"": 665, ""Assembly"": 240, ""Batchfile"": 156}",GNU General Public License v3.0,0,0,[],0,2,10,3,3,16,17,134476,11,89654 10.5281/zenodo.1172205,10.5281/zenodo.1172204,1,software,https://github.com/uomsystemsbiology/bond_graph_cardiac_AP,0,0,"{""MATLAB"": 2057179, ""M"": 452}",,0,11,[],0,0,16,0,0,16,17,0,17,0 10.5281/zenodo.1172461,10.5281/zenodo.1172460,1,software,https://github.com/rougier/density-driven,0,0,"{""Python"": 89275}",Other,5,1,[],5,0,1,0,0,1,1,0,1,0 10.5281/zenodo.1172633,10.5281/zenodo.1172632,1,dataset,,15,,,,,,,,14,73,15,14,73,75,1000860,75,1000860 10.5281/zenodo.1172665,10.5281/zenodo.1172664,1,dataset,,3,,,,,,,,3,16,3,3,16,16,315822,16,315822 10.5281/zenodo.1172806,10.5281/zenodo.1172806,1,software,https://github.com/BenjiDa/flowstress_calculator,2,0,"{""Python"": 20474, ""JavaScript"": 6253}",Other,0,1,[],0,2,14,2,2,14,16,32586,16,32586 10.5281/zenodo.1172835,10.5281/zenodo.1172834,1,dataset,,20,,,,,,,,12,22,20,12,22,22,19899728,22,19899728 10.5281/zenodo.1172988,10.5281/zenodo.1172987,1,publication,,365,,,,,,,,317,1083,365,317,1083,1197,388111070,1197,388111070 10.5281/zenodo.1173261,10.5281/zenodo.1173261,1,software,https://github.com/people3k/pop-solar-sync,4,0,{},GNU General Public License v3.0,1,0,[],1,2,179,21,6,194,612,83234236,594,18309756 10.5281/zenodo.1173314,10.5281/zenodo.1173313,1,publication,,23,,,,,,,,21,107,23,21,107,112,12602505,112,12602505 10.5281/zenodo.1173318,10.5281/zenodo.1173317,1,software,,1,,,,,,,,1,31,2,2,43,48,5090835,32,1340910 10.5281/zenodo.1173414,10.5281/zenodo.1173413,1,software,,13,,,,,,,,13,115,13,13,115,136,168307204,136,168307204 10.5281/zenodo.1173612,10.5281/zenodo.1173611,1,dataset,,7,,,,,,,,7,38,7,7,38,39,220129,39,220129 10.5281/zenodo.1173635,10.5281/zenodo.1156299,1,software,https://github.com/TentativeConvert/Eschenburg-calculator,0,0,"{""C++"": 42017, ""Makefile"": 614}",GNU General Public License v3.0,0,1,[],0,0,84,0,0,92,103,0,94,0 10.5281/zenodo.1173727,10.5281/zenodo.1173726,1,software,,0,,,,,,,,0,15,0,0,15,15,0,15,0 10.5281/zenodo.1173751,10.5281/zenodo.1173750,1,software,https://github.com/LEB-EPFL/sDaDa,0,1,"{""MATLAB"": 370737}",GNU General Public License v3.0,1,2,[],1,0,12,0,0,12,12,0,12,0 10.5281/zenodo.1173768,10.5281/zenodo.1173767,1,software,,4,,,,,,,,4,26,4,4,26,27,911832,27,911832 10.5281/zenodo.1174011,10.5281/zenodo.1174010,1,software,https://github.com/morphos30/PredDSB,3,4,"{""R"": 17489}",Apache License 2.0,0,0,[],0,3,35,3,3,35,37,96243996,37,96243996 10.5281/zenodo.1174271,10.5281/zenodo.1174271,1,software,,47,,,,,,,,10,42,47,10,42,43,1071161522,43,1071161522 10.5281/zenodo.1174331,10.5281/zenodo.1174330,1,dataset,,6,,,,,,,,6,21,6,6,21,21,14065080,21,14065080 10.5281/zenodo.1174893,10.5281/zenodo.591533,1,software,https://github.com/librosa/librosa,1,483,"{""Python"": 849782, ""MATLAB"": 18269, ""Jupyter Notebook"": 7257, ""Shell"": 985}",ISC License,2825,132,"[audio, python, music, dsp, librosa, scipy, nyucds]",2825,1,55,57,34,996,1244,3074583331,58,55050618 10.5281/zenodo.1174979,10.5281/zenodo.596862,1,software,https://github.com/chrord/EL-NG-Data,15,0,{},GNU General Public License v3.0,0,1,[],0,15,37,19,18,47,55,1775688,43,1402500 10.5281/zenodo.1175196,10.5281/zenodo.1119069,1,software,,17,,,,,,,,17,226,18,18,256,270,29412273,234,7222297 10.5281/zenodo.1175609,10.5281/zenodo.1175608,1,dataset,,73,,,,,,,,54,164,73,54,164,192,850135674,192,850135674 10.5281/zenodo.11758,,1,software,https://github.com/SvetlanaEden/RStuff,0,0,"{""R"": 156916}",MIT License,0,1,[],0,0,6,0,0,6,6,0,6,0 10.5281/zenodo.11759,10.5281/zenodo.596539,1,software,https://github.com/ComplexNetTSP/Simulation-Files-for-Large-Scale-Model-for-Information-Dissemination-with-Device-to-Device,0,4,"{""OpenEdge ABL"": 17662527, ""Python"": 50789}",MIT License,3,12,[],3,0,13,1,1,42,49,5788196,13,0 10.5281/zenodo.11771,,1,dataset,,3,,,,,,,,3,90,3,3,90,95,149625369,95,149625369 10.5281/zenodo.11781,,1,publication,,12,,,,,,,,12,15,12,12,15,17,47222580,17,47222580 10.5281/zenodo.1179317,10.5281/zenodo.1179316,1,software,https://github.com/pachterlab/aggregationDE,0,5,"{""R"": 68014, ""Python"": 12073}",GNU General Public License v3.0,15,8,[],15,0,9,0,0,9,9,0,9,0 10.5281/zenodo.1179376,10.5281/zenodo.1179375,1,publication,,8,,,,,,,,7,10,8,7,10,10,114285952,10,114285952 10.5281/zenodo.117997,,1,dataset,,43,,,,,,,,27,93,43,27,93,103,9211995538,103,9211995538 10.5281/zenodo.1181754,10.5281/zenodo.1181753,1,software,,5,,,,,,,,5,52,5,5,52,59,1312970,59,1312970 10.5281/zenodo.1181829,10.5281/zenodo.1154124,1,software,https://github.com/enricoferrero/bioconductor-regulatory-genomics-workflow,0,0,"{""HTML"": 2153669, ""TeX"": 193610, ""R"": 506}",Creative Commons Attribution 4.0 International,1,1,"[bioconductor, r, rstats, genomics, bioinformatics]",1,0,19,0,0,36,41,0,21,0 10.5281/zenodo.1181873,10.5281/zenodo.1181872,1,software,,0,,,,,,,,0,2,3,3,48,56,9154818,2,0 10.5281/zenodo.1181896,10.5281/zenodo.1181896,1,software,https://github.com/moves-rwth/storm,2,16,"{""C++"": 13349722, ""CMake"": 220784, ""Perl 6"": 55069, ""Cuda"": 54921, ""Shell"": 12909, ""Makefile"": 10295, ""Python"": 7129, ""C"": 5207, ""Ruby"": 4831, ""Mathematica"": 4333, ""Objective-C"": 740}",GNU General Public License v3.0,44,11,"[model-checking, markov-chain, dtmc, mdp, ctmc, research, fault-tree]",44,2,1,11,5,14,19,264344580,1,48441118 10.5281/zenodo.1182581,10.5281/zenodo.1182580,1,software,,26,,,,,,,,10,53,26,10,53,56,4168683060,56,4168683060 10.5281/zenodo.1182724,10.5281/zenodo.1182723,1,software,https://github.com/verifast/verifast,4,31,"{""OCaml"": 1499572, ""C"": 357123, ""Makefile"": 38076, ""Java"": 29890, ""HTML"": 24940, ""Vala"": 10724, ""Shell"": 4300, ""Batchfile"": 2053, ""Python"": 1398, ""Standard ML"": 1136, ""CSS"": 400, ""Dockerfile"": 84}",Other,137,20,[],137,4,37,4,4,37,43,70619138,43,70619138 10.5281/zenodo.1182934,10.5281/zenodo.1182934,1,software,,19,,,,,,,,8,36,362,71,53,62,133481489,39,23099984 10.5281/zenodo.1183245,10.5281/zenodo.594121,1,software,https://github.com/lingfeiwang/lassopv,0,1,"{""R"": 8432}",GNU General Public License v3.0,0,2,"[lasso, p-value, linear-regression, variable-selection, feature-selection]",0,0,2,0,0,3,3,0,2,0 10.5281/zenodo.1183330,10.5281/zenodo.1183329,1,software,https://github.com/lev-tuby/concerted_rotations,0,1,"{""C"": 3636245, ""Mathematica"": 245083, ""Jupyter Notebook"": 60320, ""Python"": 18858, ""Shell"": 6970, ""C++"": 5861, ""Makefile"": 3302, ""Awk"": 628}",,0,1,[],0,0,6,0,0,6,6,0,6,0 10.5281/zenodo.1183375,10.5281/zenodo.1183374,1,dataset,,0,,,,,,,,0,11,0,0,11,11,0,11,0 10.5281/zenodo.1183378,10.5281/zenodo.1183377,1,software,https://github.com/pat-coady/trpo,0,79,"{""Jupyter Notebook"": 6089419, ""Python"": 44078}",MIT License,265,14,"[reinforcement-learning, policy-gradient, tensorflow, machine-learning, mujoco]",265,0,5,0,0,5,5,0,5,0 10.5281/zenodo.1183562,10.5281/zenodo.1183561,1,software,https://github.com/softwaresaved/software_in_research_survey_2014,8,1,"{""Python"": 22598}",Other,2,7,[policy],2,8,243,8,8,243,271,29485328,271,29485328 10.5281/zenodo.1183635,10.5281/zenodo.1183634,1,dataset,,43,,,,,,,,29,82,43,29,82,92,509106,92,509106 10.5281/zenodo.1183777,10.5281/zenodo.1117045,1,software,https://github.com/jhollist/crabs,0,0,"{""R"": 36212}",,3,1,"[rstats, ecology, peerj]",3,0,17,0,0,21,23,0,19,0 10.5281/zenodo.1183802,10.5281/zenodo.1183801,1,publication,,3,,,,,,,,3,13,3,3,13,14,1776786,14,1776786 10.5281/zenodo.1183815,10.5281/zenodo.1183814,1,dataset,,19,,,,,,,,19,50,19,19,50,55,773927,55,773927 10.5281/zenodo.1184144,10.5281/zenodo.1184143,1,dataset,,81,,,,,,,,36,62,81,36,62,73,114121796,73,114121796 10.5281/zenodo.1184169,10.5281/zenodo.1184163,1,software,https://github.com/RPGroup-PBoC/sortseq_belliveau,2,0,"{""Jupyter Notebook"": 820108, ""Python"": 593987}",MIT License,2,2,[],2,2,22,2,2,23,24,142378544,23,142378544 10.5281/zenodo.1184437,10.5281/zenodo.1184436,1,software,,0,,,,,,,,0,21,0,0,21,24,0,24,0 10.5281/zenodo.1184584,10.5281/zenodo.1184583,1,software,https://github.com/TomSmithCGAT/Trans_of_gluco_effects_pipelines,0,0,"{""Python"": 225262, ""JavaScript"": 16973, ""HTML"": 319}",,0,1,[],0,0,4,0,0,4,4,0,4,0 10.5281/zenodo.1184716,10.5281/zenodo.1184715,1,dataset,,1,,,,,,,,1,61,1,1,61,74,4023469,74,4023469 10.5281/zenodo.1185284,10.5281/zenodo.1185283,1,software,https://github.com/project-aero/reporting-process,4,1,"{""R"": 125465, ""Shell"": 3155, ""Makefile"": 1480}",,0,10,[],0,4,20,4,4,20,21,1317261208,21,1317261208 10.5281/zenodo.1185316,10.5281/zenodo.1185315,1,software,https://github.com/dalonsoa/solcore5,17,15,"{""Python"": 760353, ""Fortran"": 84977}",Other,28,16,"[photovoltaic, semiconductor, solar-cells, python]",28,17,1912,23,23,1947,2024,153593400,1973,127565280 10.5281/zenodo.1185321,10.5281/zenodo.1185320,1,software,https://github.com/ccoolbaugh/FrontPhysiol_Coolbaugh_Cooling_Protocol,0,0,{},MIT License,0,1,"[thermoregulation, cold-exposure, brown-adipose-tissue, shivering, skin-temperature, r, r-markdown, reproducible-research, biomedical-engineering]",0,0,6,0,0,6,6,0,6,0 10.5281/zenodo.1185451,10.5281/zenodo.1185450,1,other,,18,,,,,,,,17,26,18,17,26,27,60513732,27,60513732 10.5281/zenodo.1185579,10.5281/zenodo.1185578,1,dataset,,2,,,,,,,,2,16,2,2,16,17,4214010,17,4214010 10.5281/zenodo.11856,,1,publication,,34,,,,,,,,33,119,34,33,119,126,96700148,126,96700148 10.5281/zenodo.1186215,10.5281/zenodo.1133857,1,dataset,,674,,,,,,,,186,1602,718,212,1755,1850,158277967502,1670,83499993774 10.5281/zenodo.1186238,10.5281/zenodo.1134514,1,software,https://github.com/CxAalto/gtfs_data_pipeline,2,1,"{""Python"": 83964, ""Shell"": 77}",MIT License,4,4,[],4,1,6,2,1,6,8,223038,8,223038 10.5281/zenodo.1186239,10.5281/zenodo.1134516,1,software,https://github.com/CxAalto/gtfspy,3,8,"{""Python"": 808177, ""Java"": 34485, ""Makefile"": 27}",MIT License,58,13,"[gtfs, routing, python, sqlite]",58,3,30,3,3,36,39,16679181,32,16679181 10.5281/zenodo.1186296,10.5281/zenodo.1186295,1,software,https://github.com/ddarmon/sidpy,0,0,"{""Jupyter Notebook"": 4719897, ""Python"": 159959}",,0,1,[],0,0,5,0,0,5,5,0,5,0 10.5281/zenodo.1186682,10.5281/zenodo.1186681,1,dataset,,0,,,,,,,,0,28,0,0,28,29,0,29,0 10.5281/zenodo.1186801,10.5281/zenodo.596933,1,software,https://github.com/greenelab/pancancer,25,18,"{""Jupyter Notebook"": 1003513, ""HTML"": 285443, ""R"": 104543, ""Python"": 87147, ""Shell"": 13014}","BSD 3-Clause ""New"" or ""Revised"" License",46,7,"[tcga, classifier, transcriptome, pancancer, cancer, gene-expression, machine-learning]",46,22,1279,35,31,1438,1475,112069237,1296,106256825 10.5281/zenodo.1186803,10.5281/zenodo.1186802,1,software,https://github.com/baudisgroup/segment-liftover,0,0,"{""Python"": 41795}",MIT License,7,4,"[liftover, segment, ucsc-liftover, copy-number, probe]",7,0,11,0,0,11,11,0,11,0 10.5281/zenodo.1187120,10.5281/zenodo.1187119,1,software,https://github.com/statonlab/tripal_alchemist,0,0,"{""PHP"": 61014}",GNU General Public License v3.0,2,2,"[tripal, chado, drupal-7, admin-tool, tripal-developer-tools, tripal3, tripal3-compatible]",2,0,4,0,0,4,4,0,4,0 10.5281/zenodo.1187125,10.5281/zenodo.1187124,1,software,https://github.com/statonlab/tripaldock,2,0,"{""PLpgSQL"": 16264219, ""PHP"": 47883, ""Shell"": 5966, ""Dockerfile"": 2904}",GNU General Public License v3.0,1,3,"[tripal, tripal3, docker, docker-compose, tripal-developer-tools]",1,2,4,10,5,7,9,12961488,6,2036368 10.5281/zenodo.11877,,1,dataset,https://github.com/SequenceComparison/SupplementaryMaterial,3,0,{},,0,1,[],0,2,58,3,2,58,59,52049499,59,52049499 10.5281/zenodo.1188445,10.5281/zenodo.1188444,1,software,,2,,,,,,,,2,14,2,2,14,14,478547,14,478547 10.5281/zenodo.1188486,10.5281/zenodo.1188485,1,dataset,,32,,,,,,,,8,26,32,8,26,29,3935099220,29,3935099220 10.5281/zenodo.1188709,10.5281/zenodo.1188709,1,software,https://github.com/HullUni-bioinformatics/Harper_et_al_2018,3,1,"{""Jupyter Notebook"": 3583116, ""R"": 91913}",,1,1,[],1,2,9,15,9,120,148,51062916,11,9846678 10.5281/zenodo.1188756,10.5281/zenodo.1188756,1,software,https://github.com/FireDynamics/propti,14,1,"{""Python"": 156762, ""Shell"": 2644}",MIT License,4,3,[],4,11,76,20,14,147,207,9789750,97,9787218 10.5281/zenodo.1188812,10.5281/zenodo.1172594,1,software,https://github.com/adibender/coalitions,4,4,"{""R"": 68305, ""TeX"": 547}",Other,7,3,"[r, coalition-probabilities, election-analysis, rstats, elections]",7,2,4,26,6,24,24,9820297,4,1482144 10.5281/zenodo.1188863,10.5281/zenodo.1188862,1,software,https://github.com/ecjoliver/Global_MHW_Trends,0,0,"{""Python"": 418694, ""MATLAB"": 1029}",,4,1,[],4,0,7,0,0,7,7,0,7,0 10.5281/zenodo.1188976,10.5281/zenodo.1188975,1,dataset,,93159,,,,,,,,10300,30851,93159,10300,30851,34657,45877886814336,34657,45877886814336 10.5281/zenodo.1189006,10.5281/zenodo.1189005,1,dataset,,26,,,,,,,,24,172,26,24,172,181,117321724,181,117321724 10.5281/zenodo.11893,,1,software,https://github.com/biojs/biojs,1,121,{},Apache License 2.0,413,76,"[biojs, biology, visualisation, javascript]",413,1,25,1,1,25,25,6870,25,6870 10.5281/zenodo.1189538,10.5281/zenodo.1189538,1,dataset,,46,,,,,,,,28,50,64,44,67,73,32392181,53,23427940 10.5281/zenodo.1189793,10.5281/zenodo.1189792,1,software,https://github.com/sjbeckett/DilutionMethod-ViralLysisEstimation,2,0,"{""PostScript"": 11703534, ""R"": 102974}",MIT License,0,1,[],0,1,8,2,1,8,9,6358220,9,6358220 10.5281/zenodo.11898,10.5281/zenodo.592455,1,software,https://github.com/social-simulation/context-permeability-analysis,0,0,"{""R"": 27273}",,0,1,[],0,0,5,0,0,11,14,0,5,0 10.5281/zenodo.1189817,10.5281/zenodo.1189816,1,software,https://github.com/Grice-Lab/HmmUFOtu,5,4,"{""C++"": 1030654, ""C"": 125572, ""M4"": 68210, ""Shell"": 26056, ""Makefile"": 18996, ""DM"": 1100}",GNU General Public License v3.0,4,2,"[taxonomy-assignment, jplace, mixture-model, phylogenetic-placement, hmm, otu, dirichlet-process-mixtures, phylogenetics]",4,3,28,22,8,69,81,99077293,29,22497215 10.5281/zenodo.1190620,10.5281/zenodo.1190619,1,software,https://github.com/jnkather/immuno_literature,1,0,"{""MATLAB"": 58204}",MIT License,2,2,[],2,1,61,1,1,61,62,5495374,62,5495374 10.5281/zenodo.11918,,1,publication,,6,,,,,,,,6,20,6,6,20,20,75321972,20,75321972 10.5281/zenodo.1193665,10.5281/zenodo.1193664,1,software,https://github.com/christophmark/bayesloop,0,8,"{""Python"": 304259}",MIT License,53,9,"[time-series-analysis, model-selection, bayesian-inference, anomaly-detection, probabilistic-programming]",53,0,66,0,0,66,66,0,66,0 10.5281/zenodo.1193667,10.5281/zenodo.1193666,1,software,https://github.com/navSecurity/P-D-defense,1,2,"{""MATLAB"": 77153}",MIT License,4,2,[],4,1,22,1,1,22,23,38828,23,38828 10.5281/zenodo.1193784,10.5281/zenodo.1193783,1,software,https://github.com/TheFraserLab/HybridSliceSeq,1,0,"{""Python"": 486349, ""Jupyter Notebook"": 269521, ""Makefile"": 5428, ""Shell"": 5341, ""R"": 3090, ""q"": 150}",,1,2,[],1,1,8,1,1,13,13,356567,8,356567 10.5281/zenodo.1194239,10.5281/zenodo.1194238,1,software,https://github.com/astroJeff/dart_board,6,1,"{""Python"": 258181, ""Fortran"": 12117, ""Shell"": 2155}",MIT License,3,2,[],3,6,17,6,6,22,23,645846,18,645846 10.5281/zenodo.1194340,10.5281/zenodo.1194339,1,dataset,,112,,,,,,,,32,57,112,32,57,57,145025718,57,145025718 10.5281/zenodo.1194480,10.5281/zenodo.1194479,1,dataset,,0,,,,,,,,0,53,0,0,53,55,0,55,0 10.5281/zenodo.1194482,10.5281/zenodo.1194481,1,dataset,,15,,,,,,,,11,15,15,11,15,15,753426,15,753426 10.5281/zenodo.1194490,10.5281/zenodo.1194489,1,dataset,,12,,,,,,,,6,1248,12,6,1248,1277,4898896984,1277,4898896984 10.5281/zenodo.1194516,10.5281/zenodo.1194515,1,image,,70,,,,,,,,32,174,70,32,174,187,20378225262,187,20378225262 10.5281/zenodo.1195041,10.5281/zenodo.1133781,1,software,https://github.com/drsteve/LANLGeoMag,37,11,"{""C"": 5151015, ""Python"": 710721, ""Fortran"": 345587, ""Objective-C"": 212089, ""C++"": 49056, ""M4"": 33709, ""Perl"": 29075, ""Makefile"": 21872, ""HTML"": 8935, ""GLSL"": 6518, ""sed"": 954, ""Shell"": 667}",Other,5,5,[],5,17,37,39,19,52,61,13933041013,41,13218754643 10.5281/zenodo.1195050,10.5281/zenodo.1195050,1,software,https://github.com/biocatiit/musclex,1,0,"{""Python"": 1066878, ""HTML"": 439070, ""Dockerfile"": 1292, ""Shell"": 1143, ""Roff"": 717, ""OpenEdge ABL"": 498}",Other,2,4,"[musclex, diffraction, fibers, muscle]",2,1,36,59,23,182,217,4602788931,40,83015107 10.5281/zenodo.11953,,1,publication,,68,,,,,,,,64,73,68,64,73,74,167881460,74,167881460 10.5281/zenodo.1196013,10.5281/zenodo.1196012,1,publication,,66,,,,,,,,59,73,66,59,73,84,234987456,84,234987456 10.5281/zenodo.1196033,10.5281/zenodo.1196032,1,dataset,,2,,,,,,,,2,43,2,2,43,54,18966460462,54,18966460462 10.5281/zenodo.1196304,10.5281/zenodo.1196303,1,dataset,,13,,,,,,,,9,27,13,9,27,30,4055367472,30,4055367472 10.5281/zenodo.1196322,10.5281/zenodo.1196321,1,dataset,,2,,,,,,,,2,10,2,2,10,11,730112,11,730112 10.5281/zenodo.1196417,10.5281/zenodo.1196416,1,software,https://github.com/joommf/oommf-extension-dmi-cnv,5,1,"{""C++"": 10864, ""Makefile"": 427}","BSD 3-Clause ""New"" or ""Revised"" License",1,1,[],1,5,62,5,5,62,65,60615,65,60615 10.5281/zenodo.1196451,10.5281/zenodo.1196450,1,software,https://github.com/joommf/oommf-extension-dmi-d2d,12,1,"{""C++"": 10422, ""Makefile"": 427}","BSD 3-Clause ""New"" or ""Revised"" License",2,1,[],2,11,76,12,11,76,81,141564,81,141564 10.5281/zenodo.1196540,10.5281/zenodo.1120431,1,software,https://github.com/ropensci/hydroscoper,3,1,"{""R"": 46151, ""TeX"": 3766}",Other,7,2,"[climate, hydroscope, hydrometeorology, hydrology, tidy-data, time-series, greece, water-resources, meteorological-stations, meteorological-data, r, rstats, r-package, peer-reviewed]",7,2,29,28,6,44,49,26134729,30,3778068 10.5281/zenodo.1196651,10.5281/zenodo.1196650,1,publication,,1,,,,,,,,1,13,1,1,13,14,23552,14,23552 10.5281/zenodo.1196784,10.5281/zenodo.1196783,1,dataset,,1,,,,,,,,1,22,1,1,22,22,6333045,22,6333045 10.5281/zenodo.1196820,10.5281/zenodo.1196819,1,software,https://github.com/joommf/oommf-extension-dmi-t,3,0,"{""C++"": 11398, ""Makefile"": 423}","BSD 3-Clause ""New"" or ""Revised"" License",1,1,[],1,3,42,3,3,42,46,34971,46,34971 10.5281/zenodo.1197041,10.5281/zenodo.1197040,1,publication,,4,,,,,,,,4,21,4,4,21,21,341779464,21,341779464 10.5281/zenodo.1197424,10.5281/zenodo.1197423,1,software,https://github.com/raghvendra5688/DMI,1,0,"{""MATLAB"": 99886, ""Python"": 4257, ""R"": 579}",MIT License,1,1,[],1,1,19,1,1,19,20,62936756,20,62936756 10.5281/zenodo.11980,,1,software,https://github.com/F1000Research/JSAV,4,0,{},,0,1,[],0,4,35,4,4,35,36,3402788,36,3402788 10.5281/zenodo.1198189,10.5281/zenodo.1198188,1,dataset,,11,,,,,,,,10,57,11,10,57,58,180092,58,180092 10.5281/zenodo.1198430,10.5281/zenodo.1198429,1,software,,70,,,,,,,,69,314,70,69,314,338,1323032410,338,1323032410 10.5281/zenodo.1198905,10.5281/zenodo.1198904,1,software,https://github.com/wright-group/WrightTools,4,4,"{""Python"": 522647, ""AGS Script"": 16636, ""TeX"": 11769, ""Shell"": 1042}",MIT License,5,7,[python],5,3,11,70,22,206,299,1576926704,11,62880216 10.5281/zenodo.1198911,10.5281/zenodo.1198910,1,software,https://github.com/wright-group/PyCMDS,1,0,"{""Python"": 666696, ""C++"": 43260, ""C"": 15060, ""Batchfile"": 213}",MIT License,4,4,[],4,1,24,7,3,35,47,75390201,27,10920273 10.5281/zenodo.1199011,10.5281/zenodo.1199010,1,dataset,,497,,,,,,,,251,1092,497,251,1092,1204,4561536945472,1204,4561536945472 10.5281/zenodo.1199192,10.5281/zenodo.1199191,1,software,https://github.com/metaborg/pie,2,3,"{""Java"": 239850, ""Kotlin"": 87893}",Apache License 2.0,4,3,[pipeline],4,2,6,2,2,6,6,209250,6,209250 10.5281/zenodo.1199194,10.5281/zenodo.1199193,1,software,https://github.com/metaborg/spoofax-pie,1,2,"{""Java"": 326590, ""Kotlin"": 68978, ""Shell"": 1184}",,0,8,[],0,1,3,1,1,3,4,216938,4,216938 10.5281/zenodo.1199529,10.5281/zenodo.838175,1,dataset,,214,,,,,,,,70,117,214,70,120,127,531741828223,123,531741828223 10.5281/zenodo.1199630,10.5281/zenodo.838183,1,dataset,,94,,,,,,,,26,58,94,26,60,71,239268204344,68,239268204344 10.5281/zenodo.1200255,10.5281/zenodo.1200255,1,dataset,,5,,,,,,,,5,79,5,5,79,81,18868973495,81,18868973495 10.5281/zenodo.1200265,10.5281/zenodo.1200265,1,dataset,,6,,,,,,,,6,80,6,6,84,90,382731738,86,382731738 10.5281/zenodo.1200339,10.5281/zenodo.1200339,1,software,https://github.com/giovannistrona/oil-palm-primates,11,0,"{""Python"": 89670, ""R"": 17901}",GNU General Public License v3.0,2,2,[],2,11,83,11,11,88,94,3860769,89,3860769 10.5281/zenodo.1200661,10.5281/zenodo.1200661,1,software,https://github.com/tripal/fields_generator,0,1,"{""PHP"": 35213}",GNU General Public License v3.0,0,4,"[tripal, tripal3, tripal-developer-tools, composer]",0,0,4,10,4,7,7,12101224,4,0 10.5281/zenodo.1201460,10.5281/zenodo.1201459,1,software,https://github.com/schae234/PonyTools,7,2,"{""Python"": 174497}",MIT License,0,1,[],0,2,22,8,3,33,34,358998968,22,314124076 10.5281/zenodo.1201548,10.5281/zenodo.1201547,1,software,https://github.com/colford/nbgw-plant-illumina-pipeline,0,1,"{""Python"": 58667, ""Shell"": 1793}",GNU General Public License v3.0,0,2,[],0,0,15,4,4,527,536,145140,17,0 10.5281/zenodo.1202093,10.5281/zenodo.1202092,1,dataset,,2,,,,,,,,2,12,2,2,12,12,46368,12,46368 10.5281/zenodo.1202256,10.5281/zenodo.1202255,1,publication,,32,,,,,,,,31,52,32,31,52,57,74558144,57,74558144 10.5281/zenodo.1202355,10.5281/zenodo.1202354,1,software,,0,,,,,,,,0,2,0,0,2,2,0,2,0 10.5281/zenodo.1202379,10.5281/zenodo.1202378,1,software,https://github.com/wannesm/dtaidistance,4,52,"{""Python"": 202460, ""Makefile"": 1582}",Other,221,10,"[timeseries, dtw, clustering, dynamic-time-warping, distance-measure]",221,2,35,29,17,349,403,1661939,35,141584 10.5281/zenodo.1203703,10.5281/zenodo.1203702,1,publication,,0,,,,,,,,0,6,0,0,6,6,0,6,0 10.5281/zenodo.1204508,10.5281/zenodo.1204508,1,software,https://github.com/tripal/TripalTestSuite,3,1,"{""PHP"": 158150}",GNU Lesser General Public License v3.0,3,5,"[tripal, tripal3, unittest, database-seeder, drupal, tripal-developer-tools]",3,2,1,340,34,26,41,182499846,1,479124 10.5281/zenodo.1204715,10.5281/zenodo.1204715,1,software,https://github.com/clauswilke/t7-attenuation,1,0,"{""HTML"": 817958, ""R"": 33258, ""Python"": 3023}",,0,1,[],0,1,34,1,1,35,43,63378668,42,63378668 10.5281/zenodo.1204838,10.5281/zenodo.1204837,1,dataset,,17,,,,,,,,17,55,17,17,55,60,771817,60,771817 10.5281/zenodo.1204885,10.5281/zenodo.1204884,1,poster,,154,,,,,,,,131,206,154,131,206,215,124863662,215,124863662 10.5281/zenodo.1204887,10.5281/zenodo.1204886,1,dataset,,46,,,,,,,,36,72,46,36,72,79,8975426,79,8975426 10.5281/zenodo.1204916,10.5281/zenodo.1204915,1,dataset,,13,,,,,,,,9,25,13,9,25,28,4107008,28,4107008 10.5281/zenodo.1205064,10.5281/zenodo.1205063,1,software,,5,,,,,,,,4,65,5,4,65,75,271624270,75,271624270 10.5281/zenodo.1205137,10.5281/zenodo.1205136,1,software,,3,,,,,,,,3,20,3,3,20,20,163242,20,163242 10.5281/zenodo.1205233,10.5281/zenodo.1205232,1,dataset,,539,,,,,,,,226,833,539,226,833,952,726378221676,952,726378221676 10.5281/zenodo.1205235,10.5281/zenodo.1065973,1,software,https://github.com/FAIRMetrics/Metrics,2,13,"{""Ruby"": 250493, ""JavaScript"": 171329, ""CSS"": 98353, ""HTML"": 50912, ""Perl"": 49531, ""TeX"": 44160, ""Roff"": 26258, ""Python"": 5921, ""Shell"": 3036, ""CoffeeScript"": 1477}",,56,31,[],56,2,48,77,76,549,616,261100189,49,5904714 10.5281/zenodo.1205247,10.5281/zenodo.1205246,1,software,https://github.com/oxgiraldo/SMART-Protocols,1,2,"{""HTML"": 7460196, ""CSS"": 10362}",,2,1,[],2,1,10,1,1,10,10,210502846,10,210502846 10.5281/zenodo.1205522,10.5281/zenodo.1205522,1,software,https://github.com/statonlab/tripal_dev_mini_dataset,0,2,"{""Python"": 12626, ""Perl"": 3371, ""Shell"": 1831}",GNU General Public License v3.0,0,1,"[tripal, tripal3-compatible, dataset, bioinformatics, tripal-developer-tools, chado]",0,0,5,0,0,6,6,0,5,0 10.5281/zenodo.1205622,10.5281/zenodo.1205621,1,software,https://github.com/Musical-Neutron/MW_Satellite_LF,10,0,"{""Python"": 37482}",GNU General Public License v3.0,0,1,[],0,10,48,10,10,48,55,415574870,55,415574870 10.5281/zenodo.1205675,10.5281/zenodo.1205674,1,software,https://github.com/CICE-Consortium/CICE,3,40,"{""Fortran"": 3582580, ""Shell"": 52607, ""Python"": 20306, ""C"": 14237, ""Makefile"": 6015, ""TypeScript"": 5886}",,14,11,[],14,2,71,8,7,134,162,94421539,77,34827354 10.5281/zenodo.1205681,10.5281/zenodo.1205680,1,dataset,,0,,,,,,,,0,13,0,0,13,14,0,14,0 10.5281/zenodo.1205687,10.5281/zenodo.1205685,1,dataset,,0,,,,,,,,0,22,0,0,22,23,0,23,0 10.5281/zenodo.1205693,10.5281/zenodo.1205692,1,dataset,,2,,,,,,,,1,31,2,1,31,33,12782,33,12782 10.5281/zenodo.1205695,10.5281/zenodo.1205694,1,dataset,,1,,,,,,,,1,20,1,1,20,21,718,21,718 10.5281/zenodo.1205699,10.5281/zenodo.1205698,1,dataset,,0,,,,,,,,0,14,0,0,14,15,0,15,0 10.5281/zenodo.1205702,10.5281/zenodo.1205701,1,dataset,,0,,,,,,,,0,32,0,0,32,34,0,34,0 10.5281/zenodo.1205704,10.5281/zenodo.1205703,1,dataset,,0,,,,,,,,0,13,0,0,13,14,0,14,0 10.5281/zenodo.1205708,10.5281/zenodo.1205707,1,dataset,,0,,,,,,,,0,11,0,0,11,12,0,12,0 10.5281/zenodo.1205711,10.5281/zenodo.1205710,1,dataset,,3,,,,,,,,2,41,3,2,41,42,4854855,42,4854855 10.5281/zenodo.1205810,10.5281/zenodo.1205809,1,dataset,,0,,,,,,,,0,29,0,0,29,30,0,30,0 10.5281/zenodo.1205818,10.5281/zenodo.1205817,1,dataset,,0,,,,,,,,0,13,0,0,13,14,0,14,0 10.5281/zenodo.1205822,10.5281/zenodo.1205821,1,dataset,,0,,,,,,,,0,14,0,0,14,15,0,15,0 10.5281/zenodo.1205828,10.5281/zenodo.1205827,1,dataset,,0,,,,,,,,0,15,0,0,15,16,0,16,0 10.5281/zenodo.1205852,10.5281/zenodo.1205851,1,dataset,,1,,,,,,,,1,34,1,1,34,35,3285306,35,3285306 10.5281/zenodo.1205860,10.5281/zenodo.1205859,1,dataset,,0,,,,,,,,0,10,0,0,10,11,0,11,0 10.5281/zenodo.1206101,10.5281/zenodo.867645,1,dataset,,30,,,,,,,,24,116,1628,161,393,451,1135654589782,123,20936333130 10.5281/zenodo.1206142,10.5281/zenodo.1206141,1,software,https://github.com/cherab/core,6,7,"{""Python"": 1659807, ""Shell"": 540}",European Union Public License 1.1,19,7,"[python, framework, scientific-computing, science, physics, plasma, fusion]",19,4,102,21,10,111,124,39233274,107,9412680 10.5281/zenodo.1206197,10.5281/zenodo.1168722,1,software,https://github.com/jorge-real/TTS-Runtime-Ravenscar,0,1,"{""Ada"": 46705, ""Shell"": 1067}",MIT License,2,2,[],2,0,9,1,1,15,18,7230,12,0 10.5281/zenodo.1206284,10.5281/zenodo.1206283,1,software,,0,,,,,,,,0,17,0,0,17,17,0,17,0 10.5281/zenodo.1206331,10.5281/zenodo.1206330,1,software,https://github.com/hotquakeroats/LB_D1Q3,1,0,"{""C"": 483901, ""Gnuplot"": 237237, ""Makefile"": 55514, ""C++"": 24249, ""TeX"": 4274, ""Shell"": 213}",Other,0,0,[],0,1,20,4,4,33,35,506443777,20,126285929 10.5281/zenodo.1206985,10.5281/zenodo.1206984,1,software,https://github.com/eruffaldi/paper_ark2018_imucalibration,13,2,"{""MATLAB"": 217885}",,1,2,"[imu, calibration, body, kalman, ukf, matlab, paper]",1,8,53,13,8,53,64,959052601,64,959052601 10.5281/zenodo.1207293,10.5281/zenodo.596849,1,software,https://github.com/ofgulban/compoda,0,0,"{""Python"": 30651}","BSD 3-Clause ""New"" or ""Revised"" License",4,4,[],4,0,4,3,2,16,18,880166,4,0 10.5281/zenodo.1207309,10.5281/zenodo.1207308,1,software,https://github.com/ChrisTrivedi/BFP-Characterization-VSEARCH-workflow,1,0,"{""Shell"": 6177}",MIT License,0,1,[],0,1,14,1,1,14,15,4315,15,4315 10.5281/zenodo.1207321,10.5281/zenodo.1207321,1,publication,,0,,,,,,,,0,10,0,0,10,10,0,10,0 10.5281/zenodo.1207617,10.5281/zenodo.1207616,1,software,https://github.com/MiriamRGarcia/Ecoli_inactivation_BAC,16,,,,,,,,15,83,16,15,83,96,178313605,96,178313605 10.5281/zenodo.1207806,10.5281/zenodo.596442,1,software,https://github.com/feltor-dev/feltor,1,12,"{""C++"": 1829763, ""Cuda"": 1174986, ""TeX"": 134858, ""JavaScript"": 36489, ""Makefile"": 30242, ""C"": 2004, ""Python"": 1868, ""Shell"": 1687}",MIT License,9,4,"[discontinuous-galerkin, gpu, openmp, computational-physics, computational-fluid-dynamics, numerical-simulations, plasma-turbulence, cuda, c-plus-plus, numerical-methods, parallel-computing, parallel-algorithm, mpi]",9,1,24,3,2,87,103,3813576,25,1236102 10.5281/zenodo.1207846,10.5281/zenodo.1207845,1,software,https://github.com/SMARTProtocols/SMARTProtocols.github.io,0,1,"{""HTML"": 1743664, ""CSS"": 23083}",,0,2,[],0,0,17,0,0,17,18,0,18,0 10.5281/zenodo.1208040,10.5281/zenodo.1208039,1,software,,2,,,,,,,,2,39,2,2,39,40,33696,40,33696 10.5281/zenodo.1208401,10.5281/zenodo.1208400,1,dataset,,1,,,,,,,,1,26,1,1,26,29,146266156,29,146266156 10.5281/zenodo.1208607,10.5281/zenodo.1208606,1,software,https://github.com/grimbough/BiocWorkflowTools,6,0,"{""R"": 22675, ""TeX"": 10492}",Other,0,1,[],0,5,40,6,5,40,41,2321796,41,2321796 10.5281/zenodo.1208684,10.5281/zenodo.1208683,1,dataset,,17,,,,,,,,12,33,17,12,33,36,7662036,36,7662036 10.5281/zenodo.1208706,10.5281/zenodo.786605,1,software,https://github.com/FRESNA/PyPSA,11,111,"{""Python"": 293251, ""CSS"": 948, ""Makefile"": 202}",GNU General Public License v3.0,235,56,"[python, loadflow, optimisation, pyomo, energy-system, power-systems-analysis, optimal-power-flow]",235,11,114,68,54,755,800,114815825,117,21003367 10.5281/zenodo.1208717,10.5281/zenodo.1208716,1,software,https://github.com/LLNL/MahonFitting,0,0,"{""Python"": 28092}",GNU General Public License v2.0,1,5,[],1,0,6,0,0,6,6,0,6,0 10.5281/zenodo.1209137,10.5281/zenodo.596849,1,software,https://github.com/ofgulban/compoda,1,0,"{""Python"": 30651}","BSD 3-Clause ""New"" or ""Revised"" License",4,4,[],4,1,7,3,2,16,18,880166,9,301166 10.5281/zenodo.1209290,10.5281/zenodo.593626,1,software,https://github.com/AASJournals/AASTeX60,4,21,"{""TeX"": 227817}",LaTeX Project Public License v1.3c,28,10,"[journals, manuscripts, astronomy, aastex, bibtex, citation]",28,4,42,5,5,67,80,6019798,50,4102992 10.5281/zenodo.1209380,10.5281/zenodo.1209379,1,software,https://github.com/yangwu91/gene_info,0,0,"{""Python"": 2714}",,0,1,[],0,0,0,0,0,0,0,0,0,0 10.5281/zenodo.1209644,10.5281/zenodo.1209196,1,software,,0,,,,,,,,0,7,8,6,74,93,553950,8,0 10.5281/zenodo.1209827,10.5281/zenodo.1209827,1,publication,,0,,,,,,,,0,10,0,0,10,10,0,10,0 10.5281/zenodo.1210107,10.5281/zenodo.1206998,1,publication,https://github.com/ChengLiLab/OCEAN-C,1,0,"{""Python"": 5768, ""Shell"": 2412, ""Rebol"": 1478, ""R"": 1249}",,0,0,[],0,1,20,1,1,24,25,233,21,233 10.5281/zenodo.1210247,10.5281/zenodo.1210246,1,other,,144,,,,,,,,123,185,324,273,424,484,3835809144,219,1705271184 10.5281/zenodo.1210273,10.5281/zenodo.1210272,1,dataset,,8,,,,,,,,6,68,362,34,326,721,424552834,96,36332385 10.5281/zenodo.1210331,10.5281/zenodo.593956,1,software,https://github.com/anthofflab/mimi-rice-2010.jl,1,5,"{""Julia"": 46546}",Other,3,3,[],3,1,51,8,5,77,94,18942512,59,2266343 10.5281/zenodo.1210529,10.5281/zenodo.1210528,1,publication,,130,,,,,,,,100,31,130,100,31,33,138184020,33,138184020 10.5281/zenodo.1210993,10.5281/zenodo.1210992,1,software,,1,,,,,,,,1,37,1,1,37,41,1299638,41,1299638 10.5281/zenodo.1211171,10.5281/zenodo.1069095,1,software,https://github.com/emmesgit/RSEQREP,2,1,"{""R"": 323282, ""Shell"": 86704, ""Perl"": 53504}",Other,2,3,[],2,2,16,6,6,48,53,155602346,16,51865900 10.5281/zenodo.1211175,10.5281/zenodo.1211174,1,dataset,,54,,,,,,,,39,73,54,39,73,79,15513314,79,15513314 10.5281/zenodo.1211359,10.5281/zenodo.1211358,1,software,https://github.com/dtsoucas/GiniClust2,0,5,"{""R"": 181177}",MIT License,6,4,[],6,0,17,0,0,17,17,0,17,0 10.5281/zenodo.1211365,10.5281/zenodo.1211364,1,software,https://github.com/raamana/visualqc,1,6,"{""Python"": 402759, ""Makefile"": 2273, ""Shell"": 261}",Apache License 2.0,34,7,"[neuroimaging, anatomical-mri, cortex, neuroscience, quality-control, freesurfer, mri-images, medical-imaging, outlier-detection, fmri, qc, outlier-removal, registration, alignment]",34,1,47,1,1,47,52,35262342,52,35262342 10.5281/zenodo.1211574,10.5281/zenodo.1211574,1,dataset,,9,,,,,,,,5,40,9,5,40,43,119770,43,119770 10.5281/zenodo.1212298,10.5281/zenodo.1212297,1,software,,27,,,,,,,,21,95,27,21,95,103,4765596,103,4765596 10.5281/zenodo.1212636,10.5281/zenodo.595639,1,software,https://github.com/merliseclyde/BAS,4,9,"{""C"": 263725, ""R"": 220688, ""CSS"": 23666, ""JavaScript"": 1572}",GNU General Public License v3.0,23,3,"[bayesian, predictive-modeling, model-selection, mcmc, r-package, cran, regression, variable-selection]",23,2,7,56,12,144,150,63157979,7,5249744 10.5281/zenodo.1212695,10.5281/zenodo.1212694,1,software,https://github.com/aburrell/aacgmv2,4,7,"{""C"": 141953, ""Python"": 128029, ""C++"": 4630, ""Batchfile"": 1598}",Other,7,2,[],7,2,17,20,5,50,57,24049792,17,2153684 10.5281/zenodo.1212971,10.5281/zenodo.1212970,1,software,https://github.com/rshkarin/quanfima,0,1,"{""Python"": 104901}",MIT License,2,1,"[data-analysis, material-science, volumetric-data, morphological-analysis]",2,0,17,0,0,17,19,0,19,0 10.5281/zenodo.1213033,10.5281/zenodo.1213032,1,dataset,,1,,,,,,,,1,37,1,1,37,38,1608332,38,1608332 10.5281/zenodo.1213051,10.5281/zenodo.1213050,1,dataset,,737,,,,,,,,500,4432,757,507,4444,4860,107590890453,4814,107587436013 10.5281/zenodo.1213098,10.5281/zenodo.594940,1,software,https://github.com/blosloos/enviMass,18,,,,,,,,16,128,29,25,284,329,58279246,150,32054130 10.5281/zenodo.1213100,10.5281/zenodo.1213099,1,dataset,,1,,,,,,,,1,22,1,1,22,23,3295048,23,3295048 10.5281/zenodo.1213106,10.5281/zenodo.1213105,1,dataset,,0,,,,,,,,0,25,0,0,25,26,0,26,0 10.5281/zenodo.1213108,10.5281/zenodo.1213107,1,dataset,,1,,,,,,,,1,49,1,1,49,50,4892,50,4892 10.5281/zenodo.1213164,10.5281/zenodo.1213163,1,dataset,,1,,,,,,,,1,17,1,1,17,18,8843,18,8843 10.5281/zenodo.1213240,10.5281/zenodo.1213240,1,software,,32,,,,,,,,30,479,32,30,510,646,3904640,597,3904640 10.5281/zenodo.1213255,10.5281/zenodo.1213254,1,software,https://github.com/peterjlee/asc-ImageJ-LayerThickness,2,0,{},MIT License,1,0,[],1,2,21,2,2,21,22,3714558,22,3714558 10.5281/zenodo.1213308,10.5281/zenodo.1213307,1,software,https://github.com/muschellij2/freesurfer,1,1,"{""R"": 92872}",,2,1,[],2,1,21,1,1,21,21,544541,21,544541 10.5281/zenodo.1213380,10.5281/zenodo.1213379,1,software,https://github.com/amirdel/dispersion-random-network,1,0,"{""Python"": 413157, ""Jupyter Notebook"": 98415}",ISC License,1,2,[],1,1,29,1,1,29,30,239816423,30,239816423 10.5281/zenodo.1213384,10.5281/zenodo.1213383,1,poster,,54,,,,,,,,52,118,54,52,118,120,22383216,120,22383216 10.5281/zenodo.1213463,10.5281/zenodo.1213462,1,software,https://github.com/CICE-Consortium/Icepack,2,36,"{""Fortran"": 1835781, ""Shell"": 27364, ""C"": 12363, ""Makefile"": 6500, ""TypeScript"": 2471}",,12,8,[],12,1,42,15,7,82,123,17671914,46,2520630 10.5281/zenodo.1213574,10.5281/zenodo.1213573,1,software,https://github.com/agbarnett/decimal.places,1,0,"{""R"": 18151}",,0,0,"[statistics, journals, decimal-places]",0,1,27,3,3,51,52,7658084,27,2295480 10.5281/zenodo.1214207,10.5281/zenodo.1214206,1,software,https://github.com/aburrell/apexpy,5,5,"{""Fortran"": 186628, ""Python"": 120684, ""Batchfile"": 1598, ""Makefile"": 1002, ""Shell"": 114}",MIT License,10,4,[],10,5,46,5,5,46,49,1334355,49,1334355 10.5281/zenodo.1214319,10.5281/zenodo.1214318,1,publication,,100,,,,,,,,95,302,100,95,302,310,120498600,310,120498600 10.5281/zenodo.1214456,10.5281/zenodo.1214455,1,dataset,,1482,,,,,,,,632,1079,1482,632,1079,1210,13093936816722,1210,13093936816722 10.5281/zenodo.1214827,10.5281/zenodo.1214826,1,software,https://github.com/gaurav/aou_checklists,0,0,"{""R"": 86868, ""Perl"": 3090, ""Stan"": 2172}",MIT License,0,1,[],0,0,7,0,0,7,7,0,7,0 10.5281/zenodo.1214996,10.5281/zenodo.1214995,1,publication,,17,,,,,,,,16,27,17,16,27,29,15163660,29,15163660 10.5281/zenodo.1215044,10.5281/zenodo.1215043,1,dataset,,11,,,,,,,,10,85,11,10,85,97,24568720,97,24568720 10.5281/zenodo.1215178,10.5281/zenodo.1215177,1,software,https://github.com/koksal/tps,4,2,"{""Scala"": 93364, ""Python"": 45744, ""Shell"": 25818, ""R"": 391, ""Rebol"": 248}",Other,10,4,[],10,4,95,4,4,95,121,39921212,121,39921212 10.5281/zenodo.1215505,10.5281/zenodo.1215504,1,dataset,,52,,,,,,,,26,40,52,26,40,45,17789319,45,17789319 10.5281/zenodo.1215581,10.5281/zenodo.1215580,1,dataset,,17,,,,,,,,8,63,17,8,63,65,7366243,65,7366243 10.5281/zenodo.1215592,10.5281/zenodo.1215591,1,publication,,5,,,,,,,,4,18,5,4,18,23,2417681440,23,2417681440 10.5281/zenodo.1215631,10.5281/zenodo.836833,1,dataset,,6,,,,,,,,6,111,6,6,152,155,7704996,113,7704996 10.5281/zenodo.1215644,10.5281/zenodo.1215643,1,software,,91,,,,,,,,22,50,91,22,50,61,1901021,61,1901021 10.5281/zenodo.1215676,10.5281/zenodo.838704,1,dataset,,184,,,,,,,,60,132,256,67,167,206,214067388716,158,176101186523 10.5281/zenodo.1215720,10.5281/zenodo.1035909,1,software,https://github.com/EIT-team/Stroke_EIT_Dataset,25,0,"{""MATLAB"": 25070, ""Shell"": 3986}",Creative Commons Attribution 4.0 International,6,13,"[electrical-impedance-tomography, stroke, brain-imaging, biomedical-engineering, eit, dataset]",6,25,116,27,26,119,139,1358274171,136,1264313325 10.5281/zenodo.1215759,10.5281/zenodo.1215758,1,software,https://github.com/dkazanc/TomoPhantom,9,17,"{""C"": 246631, ""Python"": 131144, ""MATLAB"": 34871, ""CMake"": 13381, ""Shell"": 1766, ""Batchfile"": 456}",Apache License 2.0,34,3,"[image, reconstruction, tomography, radon, denoising-images, deblurring, matlab, phantom, image-reconstruction, 3d-phantoms, computed-tomography, astra-toolbox, image-classification, machine-learning]",34,8,32,16,15,90,114,71186478,36,32688594 10.5281/zenodo.1215901,10.5281/zenodo.1215900,1,software,,2,,,,,,,,2,60,2,2,60,62,2867912,62,2867912 10.5281/zenodo.1216763,10.5281/zenodo.1216762,1,dataset,,20,,,,,,,,15,26,20,15,26,27,1908552592,27,1908552592 10.5281/zenodo.1216881,10.5281/zenodo.1216880,1,software,,0,,,,,,,,0,11,0,0,11,12,0,12,0 10.5281/zenodo.1217032,10.5281/zenodo.1217031,1,software,https://github.com/lukasheinrich/pylhe,0,6,"{""Jupyter Notebook"": 39905, ""Python"": 3534}",Apache License 2.0,4,1,[],4,0,28,0,0,28,30,0,30,0 10.5281/zenodo.1217084,10.5281/zenodo.1065430,1,software,https://github.com/MSchnei/segmentator_processing_scripts,2,0,"{""Shell"": 105321, ""Python"": 30021}",,0,3,[],0,2,15,4,4,43,45,600284,15,300136 10.5281/zenodo.1217177,10.5281/zenodo.1179230,1,software,https://github.com/aburrell/ocbpy,0,1,"{""Python"": 139755}","BSD 3-Clause ""New"" or ""Revised"" License",5,2,"[python, magnetic, coordinates, coordinate-transformation, coordinate-systems, space, space-physics, ionosphere, magnetic-coordinates]",5,0,15,0,0,18,18,0,15,0 10.5281/zenodo.1217181,10.5281/zenodo.1217180,1,software,https://github.com/rstoneback/pysatCDF,1,5,"{""C"": 6105296, ""Fortran"": 204857, ""Makefile"": 110903, ""PHP"": 85789, ""Java"": 68507, ""Python"": 44156, ""Assembly"": 38498, ""C++"": 34939, ""Objective-C"": 14804, ""Shell"": 5135, ""Brainfuck"": 2601, ""Batchfile"": 51}","BSD 3-Clause ""New"" or ""Revised"" License",8,6,"[python, nasa-cdf, cdf, python-reader]",8,1,32,1,1,32,34,6158867,34,6158867 10.5281/zenodo.1217502,10.5281/zenodo.1217501,1,dataset,,8,,,,,,,,8,128,8,8,128,142,2065618944,142,2065618944 10.5281/zenodo.1217642,10.5281/zenodo.1217641,1,software,https://github.com/scottiadamson/Vex-seq,1,0,"{""Jupyter Notebook"": 5971175, ""Shell"": 1041493, ""Python"": 33530}",,0,1,[],0,1,34,1,1,39,42,18338078,36,18338078 10.5281/zenodo.1217658,10.5281/zenodo.1203650,1,software,,4,,,,,,,,4,23,4,4,34,47,1018496,36,1018496 10.5281/zenodo.1217733,10.5281/zenodo.1188317,1,dataset,,2,,,,,,,,2,22,2,2,24,24,49692235,22,49692235 10.5281/zenodo.1217803,10.5281/zenodo.1217802,1,software,https://github.com/SimonLarsen/convaq,1,0,"{""C++"": 23515, ""R"": 13509, ""C"": 367}",MIT License,1,1,[],1,1,1,3,3,5,7,218602,1,78066 10.5281/zenodo.1217831,10.5281/zenodo.1045336,1,software,https://github.com/esa/pagmo2,8,67,"{""C++"": 47667110, ""Python"": 276167, ""CMake"": 119441, ""Shell"": 13670, ""Batchfile"": 491, ""PowerShell"": 298}",Other,302,29,"[optimization, optimization-algorithms, optimization-methods, optimization-tools, parallel-computing, parallel-processing, evolutionary-algorithms, multi-objective-optimization, stochastic-optimizers, genetic-algorithm, metaheuristics, evolutionary-strategy, artificial-intelligence]",302,7,137,94,63,1579,1817,1149429450,140,79408904 10.5281/zenodo.1217892,10.5281/zenodo.1217892,1,software,https://github.com/skosukhin/yago,0,0,"{""Python"": 145786}","BSD 3-Clause ""New"" or ""Revised"" License",1,1,[],1,0,1,0,0,1,1,0,1,0 10.5281/zenodo.1217898,10.5281/zenodo.1217807,1,software,https://github.com/SimonLarsen/convaq-web,0,0,"{""HTML"": 30631, ""R"": 27444, ""CSS"": 1979, ""JavaScript"": 686, ""Shell"": 163}",MIT License,1,1,[],1,0,1,0,0,1,1,0,1,0 10.5281/zenodo.1217925,10.5281/zenodo.1157193,1,software,https://github.com/HatimChergui/mfoxh,27,0,"{""C"": 23521, ""MATLAB"": 4674}",GNU General Public License v2.0,1,1,[],1,24,174,45,39,257,292,1414831,188,855279 10.5281/zenodo.1218009,10.5281/zenodo.1218009,1,software,,1,,,,,,,,1,46,1,1,46,49,11108,49,11108 10.5281/zenodo.1218721,10.5281/zenodo.1218720,1,software,https://github.com/CyTargetLinker/cytargetlinker,0,0,"{""Java"": 132568}",Apache License 2.0,2,2,[],2,0,25,0,0,27,29,0,25,0 10.5281/zenodo.1218834,10.5281/zenodo.1218833,1,publication,,7,,,,,,,,7,30,7,7,30,30,8415617,30,8415617 10.5281/zenodo.1219243,10.5281/zenodo.595780,1,software,https://github.com/ofgulban/segmentator,0,7,"{""Python"": 109782}",GNU General Public License v3.0,40,12,"[mri, segmentation]",40,0,7,5,3,91,97,5339682,8,0 10.5281/zenodo.1219253,10.5281/zenodo.1219252,1,software,,0,,,,,,,,0,11,0,0,11,12,0,12,0 10.5281/zenodo.1219895,10.5281/zenodo.1219894,1,software,https://github.com/ernstlab/ChromTime,1,1,"{""Python"": 203764, ""C"": 87571, ""Makefile"": 657}",GNU General Public License v3.0,6,3,[],6,1,25,1,1,25,25,38155604,25,38155604 10.5281/zenodo.1220053,10.5281/zenodo.1220052,1,software,https://github.com/lbechberger/LearningPsychologicalSpaces,0,0,"{""Python"": 116481, ""Shell"": 33604, ""R"": 5757}",Other,1,2,[],1,0,5,0,0,5,5,0,5,0 10.5281/zenodo.1220090,10.5281/zenodo.1220089,1,dataset,,8,,,,,,,,6,42,8,6,42,45,11156173832,45,11156173832 10.5281/zenodo.1220427,10.5281/zenodo.1220427,1,software,https://github.com/simpeg-research/heagy-2018-emcyl,13,0,"{""Jupyter Notebook"": 20062561, ""Gnuplot"": 2698, ""Python"": 1971}",MIT License,0,1,[],0,9,25,13,9,37,43,578027177,27,578027177 10.5281/zenodo.1220711,10.5281/zenodo.1220710,1,dataset,,156,,,,,,,,86,104,156,86,104,109,19757168755,109,19757168755 10.5281/zenodo.1220929,10.5281/zenodo.1220928,1,software,,3,,,,,,,,3,47,3,3,47,50,276540867,50,276540867 10.5281/zenodo.1221348,10.5281/zenodo.593735,1,software,https://github.com/genn-team/genn,0,26,"{""C++"": 1965231, ""Python"": 142759, ""C"": 111520, ""CSS"": 25479, ""Makefile"": 16456, ""HTML"": 15332, ""Batchfile"": 11544, ""Shell"": 8898, ""TeX"": 6097, ""MATLAB"": 1659, ""Perl"": 1231, ""Objective-C"": 541}",GNU General Public License v2.0,104,14,"[computational-neuroscience, nvidia-cuda, spiking-neural-networks, simulation]",104,0,16,5,2,54,64,6719144,18,0 10.5281/zenodo.12214,10.5281/zenodo.592695,1,software,https://github.com/Kevin-Mattheus-Moerman/GIBBON,8,,,,,,,,8,102,12,12,266,269,1044925324,102,727497312 10.5281/zenodo.12216,,1,software,,43,,,,,,,,36,134,43,36,134,138,885948780,138,885948780 10.5281/zenodo.1222100,10.5281/zenodo.1222099,1,software,https://github.com/nem0o/Code_Frontiers,0,0,"{""C++"": 67160, ""CMake"": 2269}",GNU General Public License v3.0,0,1,[],0,0,7,0,0,7,7,0,7,0 10.5281/zenodo.1222124,10.5281/zenodo.1222123,1,software,https://github.com/grietneukermans/Rrs_bbp_Ehux,0,0,{},,0,0,[],0,0,5,0,0,5,5,0,5,0 10.5281/zenodo.1222159,10.5281/zenodo.1222158,1,software,https://github.com/maikia/ais_lfp,6,0,"{""Jupyter Notebook"": 930286, ""C"": 159991, ""Python"": 26857, ""AMPL"": 25447, ""Shell"": 390}",,0,1,[],0,6,29,6,6,29,29,6882156,29,6882156 10.5281/zenodo.12224,10.5281/zenodo.591375,1,software,https://github.com/F1000Research/cytoscape-d3,0,0,{},,0,1,[],0,0,87,2,2,109,109,34582,87,0 10.5281/zenodo.12232,,1,software,https://github.com/matzLab/TranscriptomeAnnotation,0,1,"{""Perl"": 39735}",MIT License,1,1,[],1,0,6,0,0,6,6,0,6,0 10.5281/zenodo.1223918,10.5281/zenodo.1223917,1,software,https://github.com/USGS-R/mda.streams,1,8,"{""R"": 423529}",Creative Commons Zero v1.0 Universal,3,4,[],3,1,18,1,1,18,19,385922,19,385922 10.5281/zenodo.12251,10.5281/zenodo.592766,1,software,https://github.com/UV-CDAT/uvcdat,0,55,"{""Fortran"": 2711721, ""Python"": 2397503, ""CMake"": 530046, ""C"": 386664, ""M4"": 37485, ""Shell"": 25400, ""Makefile"": 16739, ""CSS"": 13796, ""HTML"": 7746, ""C++"": 2067, ""Dockerfile"": 1201, ""Ruby"": 965, ""sed"": 731, ""Objective-C"": 216}",Other,123,33,[],123,0,144,17,14,665,718,866075540,157,0 10.5281/zenodo.1225670,10.5281/zenodo.1225669,1,software,,20,,,,,,,,19,96,20,19,96,102,1307420,102,1307420 10.5281/zenodo.12259,10.5281/zenodo.591984,1,software,https://github.com/ngcrawford/CloudForest,0,4,"{""Python"": 455700, ""C"": 314504, ""JavaScript"": 106580, ""CSS"": 55393, ""Shell"": 5106, ""C++"": 1117}",Other,9,3,[],9,0,18,0,0,21,23,0,18,0 10.5281/zenodo.1226361,10.5281/zenodo.596504,1,software,https://github.com/choderalab/yank,8,40,"{""Python"": 1399907, ""Shell"": 2032, ""Dockerfile"": 480}",MIT License,52,15,"[molecular-dynamics, molecular-dynamics-simulation, alchemical-free-energy-calculations, drug-discovery, free-energy, openmm, mskcc, python, alchemical, free-energy-perturbation]",52,4,4,297,25,149,155,2830686605,4,68509128 10.5281/zenodo.1226605,10.5281/zenodo.1226604,1,software,https://github.com/ashleefv/MetastaticCancerECMRemodeling,0,1,"{""MATLAB"": 31969}","BSD 3-Clause ""New"" or ""Revised"" License",0,1,[],0,0,7,0,0,7,7,0,7,0 10.5281/zenodo.12267,,1,software,,7,,,,,,,,6,122,7,6,122,126,6231505,126,6231505 10.5281/zenodo.12268,10.5281/zenodo.592718,1,software,https://github.com/TheMartinLab/RamDog,0,1,"{""Java"": 427961, ""Cuda"": 44966, ""C"": 2524, ""Shell"": 2328, ""Python"": 731}",Other,1,1,[],1,0,47,0,0,64,66,0,47,0 10.5281/zenodo.1227260,10.5281/zenodo.1227260,1,dataset,,2,,,,,,,,2,22,21,20,260,314,32418030,24,3634958 10.5281/zenodo.1228182,10.5281/zenodo.1184711,1,dataset,,3,,,,,,,,3,39,3,3,53,54,234711156,40,234711156 10.5281/zenodo.1228321,10.5281/zenodo.1228320,1,software,https://github.com/matty-jones/MorphCT,3,0,"{""Python"": 1015981, ""Shell"": 417, ""Batchfile"": 107}",GNU General Public License v3.0,2,3,[],2,2,7,8,5,38,43,121875012,8,21844104 10.5281/zenodo.1228461,10.5281/zenodo.1228460,1,software,https://github.com/elsemar/EastCoastDuneGrass,3,1,{},,1,1,[],1,3,64,3,3,64,65,8337,65,8337 10.5281/zenodo.1228521,10.5281/zenodo.1228520,1,software,https://github.com/trangtran86/autoHGPEC,3,0,"{""Java"": 382843}",MIT License,0,1,[],0,2,16,3,2,16,16,44675715,16,44675715 10.5281/zenodo.1228604,10.5281/zenodo.1228603,1,software,,3,,,,,,,,2,24,11,8,54,63,1887824,25,276024 10.5281/zenodo.1230276,10.5281/zenodo.1230275,1,dataset,,12,,,,,,,,9,35,12,9,35,38,184516,38,184516 10.5281/zenodo.1230484,10.5281/zenodo.1230483,1,software,https://github.com/nicl-nno/nemo-multigrid-adaptation,1,2,"{""Fortran"": 492523}",Other,0,1,[],0,1,8,1,1,8,8,98121,8,98121 10.5281/zenodo.1230523,10.5281/zenodo.1206075,1,software,https://github.com/NIB-SI/DiNAR,1,0,"{""HTML"": 19852225, ""R"": 343001, ""Python"": 17763, ""M4"": 1903, ""C"": 1445, ""TeX"": 687, ""Shell"": 240}",,0,2,[],0,1,10,1,1,11,11,48589918,10,48589918 10.5281/zenodo.1230529,10.5281/zenodo.596700,1,software,https://github.com/sdss/marvin,3,10,"{""Python"": 1491008, ""JavaScript"": 217760, ""CSS"": 210343, ""TSQL"": 154701, ""SQLPL"": 141212, ""HTML"": 69253, ""PLpgSQL"": 1577, ""Shell"": 1150}","BSD 3-Clause ""New"" or ""Revised"" License",30,11,"[astronomy, manga, marvin, sdss]",30,2,21,59,9,197,232,1120894901,29,55423407 10.5281/zenodo.1233005,10.5281/zenodo.1227088,1,dataset,,47,,,,,,,,23,36,50,24,48,57,943867779,43,941575847 10.5281/zenodo.1233011,10.5281/zenodo.1233010,1,dataset,,3,,,,,,,,3,48,3,3,48,49,154815,49,154815 10.5281/zenodo.1233505,10.5281/zenodo.1161745,1,software,,6,,,,,,,,6,30,8,8,40,48,40679676,32,26448714 10.5281/zenodo.1233661,10.5281/zenodo.1233660,1,software,,10,,,,,,,,10,128,29,12,157,183,2727293,137,162872 10.5281/zenodo.1233825,10.5281/zenodo.1233824,1,software,https://github.com/granttremblay/Tremblay2018_Code,7,1,"{""Jupyter Notebook"": 1437558, ""Python"": 96145, ""Shell"": 28506}",MIT License,1,1,[],1,7,73,7,7,73,80,31771425,80,31771425 10.5281/zenodo.1235962,10.5281/zenodo.1235877,1,software,https://github.com/ManchesterBioinference/BranchedGP,0,4,"{""Jupyter Notebook"": 414510, ""Python"": 86701, ""R"": 1486}",Apache License 2.0,18,15,[],18,0,12,0,0,17,19,0,13,0 10.5281/zenodo.1236565,10.5281/zenodo.1158289,1,software,https://github.com/geodynamics/Rayleigh,2,22,"{""Jupyter Notebook"": 2187896, ""Fortran"": 1616462, ""Python"": 270955, ""Prolog"": 7768, ""CMake"": 5897, ""Makefile"": 5420, ""Shell"": 4083, ""IDL"": 4071, ""Dockerfile"": 822, ""C"": 296}",GNU General Public License v3.0,26,26,[],26,2,55,5,5,70,77,31711576,61,12674740 10.5281/zenodo.12370,10.5281/zenodo.592046,1,software,https://github.com/phenoscape/Phenex,0,2,"{""Java"": 719300, ""Scala"": 727, ""Batchfile"": 110, ""Shell"": 104}",MIT License,7,5,"[ontology-annotation, character-matrix]",7,0,31,1,1,49,53,29963439,31,0 10.5281/zenodo.1237017,10.5281/zenodo.1237016,1,software,https://github.com/jgagneastro/finder_charts,0,0,"{""Python"": 52096}",MIT License,0,1,[],0,0,6,0,0,6,6,0,6,0 10.5281/zenodo.1237046,10.5281/zenodo.1237045,1,software,https://github.com/lucaparca/cnv,4,0,"{""R"": 17869, ""Python"": 7699}",,0,0,[],0,4,36,4,4,36,39,2932212,39,2932212 10.5281/zenodo.1237474,10.5281/zenodo.1237473,1,dataset,,15,,,,,,,,14,39,15,14,39,43,470805,43,470805 10.5281/zenodo.1237748,10.5281/zenodo.1237747,1,dataset,,10,,,,,,,,5,27,24,12,84,104,471344822,31,212973830 10.5281/zenodo.1237819,10.5281/zenodo.1237818,1,software,,5,,,,,,,,4,29,5,4,29,31,7338085,31,7338085 10.5281/zenodo.1238033,10.5281/zenodo.1238032,1,software,https://github.com/statonlab/docker-containers,2,2,"{""Dockerfile"": 6737, ""Shell"": 614}",GNU General Public License v3.0,3,2,"[tripal, drupal, chado, tripal-developer-tools, docker-image]",3,1,1,14,4,5,9,279610,1,39630 10.5281/zenodo.1238084,10.5281/zenodo.1238083,1,dataset,,57,,,,,,,,37,96,57,37,96,102,1482264591980,102,1482264591980 10.5281/zenodo.1238450,10.5281/zenodo.1238449,1,software,https://github.com/mntabassm/SAEN-LARS,0,2,"{""MATLAB"": 11095}",GNU General Public License v3.0,3,1,"[adaptive-learning, complex-valued-data, elastic-net, lasso-regression, regularized-linear-regression, regularization-paths, solution-path, sparse-reconstruction, sparse-regression, sparse-regularization, matlab-toolbox, acoustic-model, compressed-beamforming, direction-of-arrival, source-localization]",3,0,21,1,1,42,43,49405,21,0 10.5281/zenodo.1238697,10.5281/zenodo.1238696,1,dataset,,15,,,,,,,,14,27,15,14,27,29,179745,29,179745 10.5281/zenodo.12388,10.5281/zenodo.592806,1,software,https://github.com/jhemsley/Syr-SM-Collection-Toolkit,0,4,"{""Python"": 59844}",MIT License,1,9,[],1,0,11,0,0,12,14,0,11,0 10.5281/zenodo.1238813,10.5281/zenodo.1238813,1,software,https://github.com/julblarod/SOPHISM,7,0,"{""IDL"": 583343, ""C"": 128219, ""Prolog"": 98179, ""C++"": 1269, ""Makefile"": 890, ""Shell"": 790}",GNU Lesser General Public License v2.1,1,0,[],1,5,98,7,5,98,102,2723511,102,2723511 10.5281/zenodo.1239106,10.5281/zenodo.1239106,1,software,https://github.com/bocinsky/guedesbocinsky2018,10,1,"{""R"": 54723, ""Shell"": 2343, ""Dockerfile"": 1101}",Other,1,2,[],1,7,56,22,7,68,90,395247152,66,6956170 10.5281/zenodo.12394,10.5281/zenodo.595923,1,software,https://github.com/oscarperpinan/rastervis,0,13,"{""R"": 82476}",GNU General Public License v3.0,50,7,[],50,0,17,2,2,38,44,144592,17,0 10.5281/zenodo.1239599,10.5281/zenodo.1239598,1,software,https://github.com/SteffCruve/AMALGAM,1,0,"{""Shell"": 106220, ""Python"": 94223, ""R"": 664}",,0,1,[],0,1,70,1,1,70,73,167962,73,167962 10.5281/zenodo.1239703,10.5281/zenodo.593186,1,software,https://github.com/locie/triflow,2,0,"{""Python"": 125933, ""CSS"": 91885, ""JavaScript"": 21234, ""HTML"": 15919, ""Makefile"": 1869}",MIT License,7,1,"[modelling, simulation, partial-differential-equations]",7,2,32,3,2,34,43,58027696,39,48383080 10.5281/zenodo.1239740,10.5281/zenodo.1239739,1,other,,25,,,,,,,,16,22,25,16,22,25,7773837,25,7773837 10.5281/zenodo.1239768,10.5281/zenodo.1239767,1,dataset,,1,,,,,,,,1,19,1,1,19,20,7142068,20,7142068 10.5281/zenodo.1239854,10.5281/zenodo.1179238,1,software,https://github.com/shortlab/2018-Ge-Thermal-TGS,1,0,"{""MATLAB"": 45104}",GNU Lesser General Public License v2.1,1,3,[],1,1,19,1,1,20,21,15972145,20,15972145 10.5281/zenodo.1239857,10.5281/zenodo.1239856,1,dataset,,0,,,,,,,,0,23,0,0,23,24,0,24,0 10.5281/zenodo.1240436,10.5281/zenodo.1240436,1,software,,3,,,,,,,,3,9,6,5,27,29,77077176,9,38538834 10.5281/zenodo.1240468,10.5281/zenodo.1240467,1,software,https://github.com/windbench/NEWAMesoMicroChallengePhase1,4,0,"{""Jupyter Notebook"": 481411, ""Python"": 16414}",GNU General Public License v3.0,0,1,[],0,4,20,4,4,20,25,51476,25,51476 10.5281/zenodo.1240771,10.5281/zenodo.1240770,1,software,,22,,,,,,,,21,103,22,21,103,106,927234,106,927234 10.5281/zenodo.1240931,10.5281/zenodo.1040663,1,dataset,,224,,,,,,,,75,1014,277,98,1151,1238,4947820962,1084,4073768436 10.5281/zenodo.1241005,10.5281/zenodo.1172071,1,video,,1,,,,,,,,1,8,1,1,9,9,10044574961,8,10044574961 10.5281/zenodo.1241024,10.5281/zenodo.1241010,1,software,https://github.com/mschauer/MicrostructureNoise.jl,3,2,"{""Jupyter Notebook"": 16892030, ""Julia"": 12664}",Other,0,3,"[volatility, microstructure]",0,2,39,11,4,59,64,9984955,40,392169 10.5281/zenodo.1241103,10.5281/zenodo.1241103,1,dataset,,31,,,,,,,,7,48,31,7,48,58,61614000,58,61614000 10.5281/zenodo.1241137,10.5281/zenodo.1181851,1,software,https://github.com/jmonlong/reppopsv,1,0,"{""R"": 53842, ""Python"": 23070, ""Shell"": 16910}",,1,1,[],1,1,11,1,1,12,13,2941098,12,2941098 10.5281/zenodo.1241162,10.5281/zenodo.1241161,1,software,https://github.com/sebawild/nearly-optimal-mergesort-code,3,1,"{""Java"": 114017, ""Shell"": 865}",MIT License,3,2,[],3,3,31,3,3,31,31,140664,31,140664 10.5281/zenodo.1241164,10.5281/zenodo.1241163,1,software,https://github.com/mmondelli/swift-phylo,0,1,"{""C"": 3746485, ""Shell"": 1693471, ""C++"": 946031, ""Perl"": 109862, ""Roff"": 77284, ""Ruby"": 45712, ""Makefile"": 25653, ""Objective-C"": 24435, ""Python"": 15846, ""Swift"": 2446, ""Batchfile"": 299}",Apache License 2.0,0,1,[],0,0,9,0,0,15,17,0,9,0 10.5281/zenodo.1241166,10.5281/zenodo.1241165,1,software,https://github.com/mmondelli/swift-gecko,0,1,"{""Shell"": 16536, ""Swift"": 4543}",Apache License 2.0,0,1,[],0,0,13,0,0,20,22,0,13,0 10.5281/zenodo.1241200,10.5281/zenodo.1241199,1,software,https://github.com/immunomethylomics/FlowSorted.Blood.EPIC,4,1,"{""R"": 44651}",,2,3,[],2,4,63,4,4,63,67,144916,67,144916 10.5281/zenodo.1241235,10.5281/zenodo.1241234,1,software,https://github.com/JustinChu/JupiterPlot,11,0,"{""Perl"": 926025, ""HTML"": 19089, ""Roff"": 5622, ""Shell"": 4987, ""Makefile"": 2732, ""Batchfile"": 824}",GNU General Public License v3.0,18,1,[],18,11,81,11,11,81,93,608953477,93,608953477 10.5281/zenodo.1241532,10.5281/zenodo.1241531,1,software,,2,,,,,,,,2,26,2,2,26,29,33446,29,33446 10.5281/zenodo.12417,10.5281/zenodo.591763,1,software,https://github.com/lfle/scaling-octo-tribble,0,0,"{""Fortran"": 22487}",MIT License,1,1,[],1,0,4,0,0,26,26,0,4,0 10.5281/zenodo.12422,10.5281/zenodo.592850,1,software,https://github.com/cytognomix/splicemc,3,1,"{""PHP"": 472726, ""CSS"": 5008}",GNU General Public License v3.0,0,1,[],0,2,32,5,4,72,75,3999767,32,833733 10.5281/zenodo.1242911,10.5281/zenodo.1003149,1,publication,https://github.com/citation-file-format/citation-file-format.github.io,39,4,"{""CSS"": 86532, ""HTML"": 69859, ""JavaScript"": 56369, ""Python"": 10394, ""Ruby"": 6291, ""TeX"": 5563, ""Shell"": 986}",,2,3,"[citation-files, credit, attribution, research-software-engineering, sustainability, format, standard, yaml, wssspe]",2,36,70,291,236,466,566,38316109,75,5213988 10.5281/zenodo.1243176,10.5281/zenodo.1241177,1,software,https://github.com/mmondelli/rasflow,0,0,"{""Python"": 21833, ""Perl"": 19783, ""Swift"": 17219, ""Shell"": 15375}",Apache License 2.0,0,1,[],0,0,3,0,0,8,10,0,3,0 10.5281/zenodo.1243204,10.5281/zenodo.1243203,1,software,https://github.com/TheDBStern/interspecific_rnaseq,1,0,"{""Python"": 66725, ""R"": 3866, ""Perl"": 3808}",,1,1,[],1,1,5,1,1,5,6,338390,6,338390 10.5281/zenodo.1243840,10.5281/zenodo.1243839,1,software,https://github.com/immunomethylomics/Analysis_FlowSorted.Blood.EPIC,9,0,"{""R"": 49722}",GNU General Public License v3.0,0,2,[],0,9,35,9,9,35,38,780273,38,780273 10.5281/zenodo.1243863,10.5281/zenodo.1243862,1,software,,1,,,,,,,,1,16,26,26,503,548,497464095,16,17007417 10.5281/zenodo.1243912,10.5281/zenodo.1241462,1,software,https://github.com/mmondelli/bioworkbench,0,1,"{""HTML"": 38532289, ""R"": 29142, ""Python"": 18291, ""CSS"": 12870, ""Shell"": 5480}",Apache License 2.0,0,1,[],0,0,3,1,1,13,21,30826190,3,0 10.5281/zenodo.1244096,10.5281/zenodo.1244095,1,dataset,,11,,,,,,,,4,34,11,4,34,38,94217783,38,94217783 10.5281/zenodo.1244109,10.5281/zenodo.1244108,1,dataset,,10,,,,,,,,7,29,10,7,29,33,2697906,33,2697906 10.5281/zenodo.1244328,10.5281/zenodo.1244328,1,software,https://github.com/tlambert03/FPbase,4,1,"{""JavaScript"": 3827356, ""Python"": 701660, ""CSS"": 509631, ""HTML"": 389834}",GNU General Public License v3.0,13,1,[],13,2,96,8,2,111,133,31163764,111,19858188 10.5281/zenodo.1245164,10.5281/zenodo.1245164,1,software,https://github.com/sanjastevanovic/epnurbs,1,0,"{""Python"": 56664}",MIT License,0,0,[],0,1,7,1,1,7,8,47016,8,47016 10.5281/zenodo.1245507,10.5281/zenodo.1189538,1,dataset,,2,,,,,,,,2,7,64,44,67,73,32392181,7,1121513 10.5281/zenodo.1246085,10.5281/zenodo.1246084,1,dataset,,45,,,,,,,,19,86,45,19,86,94,214801777,94,214801777 10.5281/zenodo.1246597,10.5281/zenodo.1246596,1,dataset,,4,,,,,,,,4,62,4,4,62,117,12846264,117,12846264 10.5281/zenodo.1246698,10.5281/zenodo.1246697,1,software,https://github.com/phenoscape/phenoscape-nlp,0,3,"{""Java"": 2767010, ""Perl"": 347731, ""Perl 6"": 4786, ""Roff"": 2511, ""Batchfile"": 336, ""Shell"": 153}",MIT License,7,8,[],7,0,13,0,0,13,15,0,15,0 10.5281/zenodo.1246871,10.5281/zenodo.1246743,1,software,https://github.com/kalamadude/Renormalized_Mori_Zwanzig,2,2,"{""MATLAB"": 1039057, ""Mathematica"": 535967, ""TeX"": 8269, ""M"": 1246}",,0,0,[],0,1,13,8,4,23,29,226350266,13,41309348 10.5281/zenodo.1246933,10.5281/zenodo.1246932,1,software,https://github.com/SEL4PROJ/tlb,0,1,"{""Isabelle"": 5375038, ""Standard ML"": 40136, ""TeX"": 1363}",,0,6,[],0,0,8,0,0,8,8,0,8,0 10.5281/zenodo.1246946,10.5281/zenodo.1246945,1,dataset,,28,,,,,,,,22,90,28,22,90,93,144058010152,93,144058010152 10.5281/zenodo.1246999,10.5281/zenodo.1246998,1,software,https://github.com/AdelaideBioinfo/horizontalTransfer,5,1,"{""TeX"": 287731, ""Shell"": 25804, ""R"": 1271}",,2,5,[],2,5,22,5,5,22,23,71232295,23,71232295 10.5281/zenodo.1247336,10.5281/zenodo.1247335,1,software,,0,,,,,,,,0,26,0,0,26,26,0,26,0 10.5281/zenodo.1247374,10.5281/zenodo.1247373,1,software,,2,,,,,,,,2,38,2,2,62,68,1091640,38,1091640 10.5281/zenodo.1247450,10.5281/zenodo.1247373,1,software,,0,,,,,,,,0,29,2,2,62,68,1091640,30,0 10.5281/zenodo.1247507,10.5281/zenodo.1247506,1,software,https://github.com/ozbayb/amber,4,0,"{""MATLAB"": 55170}",GNU General Public License v3.0,0,1,[],0,4,49,4,4,49,52,120134664,52,120134664 10.5281/zenodo.1247909,10.5281/zenodo.1219682,1,software,https://github.com/prasicek/GlacialSteadyStateProfile,2,0,"{""Python"": 1452}",MIT License,1,0,[],1,2,12,2,2,14,15,5052,12,5052 10.5281/zenodo.12480,,1,software,https://github.com/ptycho/ptypy,0,,,,,,,,0,312,0,0,312,343,0,343,0 10.5281/zenodo.1248020,10.5281/zenodo.1248019,1,software,https://github.com/parasitetwin/metLab,1,0,"{""R"": 32435}",,0,0,[],0,1,16,3,2,17,21,33379031,19,11126197 10.5281/zenodo.1248089,10.5281/zenodo.1248089,1,dataset,,13,,,,,,,,9,32,13,9,32,35,438455,35,438455 10.5281/zenodo.1248186,10.5281/zenodo.1248185,1,software,https://github.com/ryanusahk/NextGenSequencingScripts_RH,2,0,"{""Python"": 23158}",,1,1,[],1,2,12,2,2,12,13,33314,13,33314 10.5281/zenodo.1248193,10.5281/zenodo.1248192,1,dataset,,84,,,,,,,,65,153,84,65,153,164,29298400656,164,29298400656 10.5281/zenodo.1248441,10.5281/zenodo.1172041,1,video,,0,,,,,,,,0,2,0,0,4,4,0,2,0 10.5281/zenodo.1248458,10.5281/zenodo.1248458,1,dataset,,1,,,,,,,,1,41,1,1,41,45,2855498627,45,2855498627 10.5281/zenodo.1248463,10.5281/zenodo.1182867,1,dataset,,74,,,,,,,,53,65,82,59,78,85,9155451,70,8749451 10.5281/zenodo.1248829,10.5281/zenodo.1243070,1,software,https://github.com/pynbody/tangos,6,5,"{""Python"": 636256, ""JavaScript"": 58437, ""HTML"": 25484, ""CSS"": 7554, ""Shell"": 3013, ""Roff"": 227}","BSD 3-Clause ""New"" or ""Revised"" License",8,3,"[python, cosmology, simulation]",8,4,13,41,12,45,57,54508716,13,7913166 10.5281/zenodo.1248886,10.5281/zenodo.1248885,1,software,https://github.com/saezlab/BraDiPluS,8,2,"{""R"": 55513}",GNU General Public License v3.0,1,1,[],1,8,301,8,8,301,303,27090880,303,27090880 10.5281/zenodo.1248994,10.5281/zenodo.1248993,1,software,https://github.com/MIT-LCP/eicu-data-paper,26,1,"{""Jupyter Notebook"": 429853, ""TeX"": 68283}",MIT License,3,2,"[physionet, eicu-crd]",3,26,136,31,30,163,176,15038306,138,10684466 10.5281/zenodo.1249016,10.5281/zenodo.1249015,1,software,https://github.com/MIT-LCP/eicu-code,18,62,"{""Jupyter Notebook"": 2760506, ""HTML"": 99183, ""CSS"": 57522, ""JavaScript"": 41633, ""SQLPL"": 18638, ""Makefile"": 15671, ""PLpgSQL"": 6684, ""Shell"": 2144}",MIT License,80,33,"[database, eicu-crd, mimic, physionet, ehr, healthcare]",80,17,119,18,17,119,123,282370968,123,282370968 10.5281/zenodo.1249192,10.5281/zenodo.1249191,1,software,https://github.com/strengejacke/sjmisc,5,18,"{""R"": 295026, ""TeX"": 1145}",GNU General Public License v3.0,82,12,"[data-transformation, r, data-wrangling, labelled-data, recoding]",82,3,32,26,8,68,89,18680963,32,1043390 10.5281/zenodo.1249215,10.5281/zenodo.1249215,1,software,https://github.com/strengejacke/sjlabelled,5,3,"{""R"": 139143}",,29,7,[],29,3,60,33,10,101,122,11660770,67,2374710 10.5281/zenodo.1249216,10.5281/zenodo.1249215,1,software,https://github.com/strengejacke/sjlabelled,6,3,"{""R"": 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Public License v3.0,1,4,[],1,0,6,0,0,6,6,0,6,0 10.5281/zenodo.1250697,10.5281/zenodo.855289,1,software,https://github.com/MoMEMta/MoMEMta,0,13,"{""C++"": 1283503, ""Lua"": 75703, ""CMake"": 50122, ""Python"": 5448, ""Shell"": 4368, ""C"": 2353}",Other,15,6,[],15,0,8,0,0,13,15,0,9,0 10.5281/zenodo.1251084,10.5281/zenodo.594577,1,software,https://github.com/cylc/cylc,4,60,"{""Python"": 1900664, ""Shell"": 1250746, ""Emacs Lisp"": 5241, ""Vim script"": 4093, ""Perl"": 1209, ""Batchfile"": 67, ""HTML"": 24}",GNU General Public License v3.0,94,17,"[workflow-engine, python, metascheduler, workflow-automation, workflow-management, cycling-workflows, hpc, job-scheduler, scheduling, cylc]",94,2,38,71,11,216,245,645014764,40,37224392 10.5281/zenodo.1251618,10.5281/zenodo.1251617,1,other,,0,,,,,,,,0,14,0,0,23,29,0,17,0 10.5281/zenodo.1251639,10.5281/zenodo.1251638,1,software,https://github.com/elixir-no-nels/nels-core,0,0,"{""JavaScript"": 1410208, ""Java"": 1070235, ""HTML"": 276295, ""Python"": 185174, ""CSS"": 54309}",Apache License 2.0,2,2,[],2,0,44,0,0,44,45,0,45,0 10.5281/zenodo.1251684,10.5281/zenodo.1251683,1,dataset,,1,,,,,,,,1,26,1,1,26,29,4846397,29,4846397 10.5281/zenodo.1251973,10.5281/zenodo.1184944,1,software,https://github.com/UtaDaphniaLab/Gene_Annotation_Easy_Viewer,1,0,"{""HTML"": 1673694, ""Python"": 63462}",MIT License,2,0,[],2,1,40,5,3,84,100,767888,44,153484 10.5281/zenodo.1252097,10.5281/zenodo.597075,1,software,https://github.com/cldf/cldf,12,7,"{""Python"": 8061}",Apache License 2.0,13,34,"[tabular-data, cross-linguistic-data, metadata, dataset, metadata-vocabulary, language, wordlist]",13,10,123,28,13,176,206,8060200,145,5151276 10.5281/zenodo.1252198,10.5281/zenodo.1252197,1,software,https://github.com/ckoerber/perihelion-mercury,1,3,"{""Jupyter Notebook"": 25042, ""Python"": 10465}",MIT License,7,5,[],7,1,19,1,1,19,20,21240,20,21240 10.5281/zenodo.12522,,1,dataset,,4,,,,,,,,4,20,4,4,20,21,113183,21,113183 10.5281/zenodo.1252342,10.5281/zenodo.805993,1,software,https://github.com/CamDavidsonPilon/lifelines,9,274,"{""Python"": 757808, ""TeX"": 10550, ""Makefile"": 761}",MIT License,1081,60,"[survival-analysis, python, statistics, data-science, maximum-likelihood, reliability-analysis, cox-regression]",1081,9,407,256,85,1618,2038,1130384166,459,32345514 10.5281/zenodo.1252523,10.5281/zenodo.1252523,1,software,https://github.com/RPGroup-PBoC/mscl_survival,8,1,"{""Jupyter Notebook"": 59502681, ""HTML"": 30792274, ""Python"": 475061, ""CSS"": 44529, ""Stan"": 22179, ""JavaScript"": 14996, ""Ruby"": 819}",MIT License,0,1,"[research, biophysics, image-processing, bayesian-inference]",0,5,35,8,5,57,66,3718860240,37,3718860240 10.5281/zenodo.1252799,10.5281/zenodo.1252798,1,dataset,,4,,,,,,,,4,37,4,4,37,41,60757414,41,60757414 10.5281/zenodo.1252828,10.5281/zenodo.1252827,1,dataset,,5,,,,,,,,4,25,5,4,25,30,23303140,30,23303140 10.5281/zenodo.1253021,10.5281/zenodo.1237681,1,software,,101,,,,,,,,38,193,101,38,210,238,1249748306,219,1249748306 10.5281/zenodo.1253178,10.5281/zenodo.1253178,1,software,,24,,,,,,,,9,25,24,9,25,25,251646,25,251646 10.5281/zenodo.1253360,10.5281/zenodo.1253359,1,software,https://github.com/biocastro/CCABM,2,0,"{""NetLogo"": 38122}",MIT License,0,1,[],0,2,10,2,2,10,12,24944,12,24944 10.5281/zenodo.1253581,10.5281/zenodo.1253581,1,software,https://github.com/klho/FLAM,0,9,"{""MATLAB"": 769007}",GNU General Public License v3.0,28,8,[],28,0,44,0,0,44,52,0,52,0 10.5281/zenodo.1253999,10.5281/zenodo.1243554,1,dataset,,50,,,,,,,,33,112,50,33,117,125,144062763817,119,144062763817 10.5281/zenodo.1254004,10.5281/zenodo.1254003,1,dataset,,5,,,,,,,,4,23,5,4,23,27,851838185,27,851838185 10.5281/zenodo.1254148,10.5281/zenodo.1254147,1,software,https://github.com/JuliaMatrices/LowRankApprox.jl,6,11,"{""Julia"": 165336}",Other,34,7,[],34,5,28,37,12,89,129,2051831,31,318192 10.5281/zenodo.1254380,10.5281/zenodo.1254380,1,dataset,,299,,,,,,,,72,196,345,93,321,430,150953492148,226,150910470566 10.5281/zenodo.1254845,10.5281/zenodo.1026158,1,software,https://github.com/annoviko/pyclustering,2,137,"{""Python"": 2014364, ""C++"": 1192155, ""C"": 28991, ""TeX"": 21103, ""PowerShell"": 14553, ""Shell"": 14046, ""Makefile"": 10624}",GNU General Public License v3.0,523,38,"[clustering, oscillatory-networks, data-mining, neural-networks, python3, c-plus-plus, machine-learning, algorithms]",523,2,169,16,10,406,455,53273096,179,6402910 10.5281/zenodo.1255042,10.5281/zenodo.1255041,1,software,,22,,,,,,,,13,28,48,19,39,57,216891,34,92488 10.5281/zenodo.1255268,10.5281/zenodo.1255267,1,software,,2,,,,,,,,2,15,2,2,15,19,47004416,19,47004416 10.5281/zenodo.1255310,10.5281/zenodo.1255309,1,software,https://github.com/staphopia/staphopia-ap,4,2,"{""Nextflow"": 37884, ""Python"": 12473, ""Dockerfile"": 4457, ""Shell"": 1371}",MIT License,3,1,[],3,4,48,4,4,48,52,216979704,52,216979704 10.5281/zenodo.1255312,10.5281/zenodo.1255311,1,software,https://github.com/staphopia/staphopia-web,1,0,"{""Python"": 1104570, ""PLpgSQL"": 220011, ""HTML"": 48364, ""JavaScript"": 4139, ""CSS"": 2330}",,1,6,[],1,1,32,1,1,32,32,996534,32,996534 10.5281/zenodo.1255314,10.5281/zenodo.1255313,1,software,https://github.com/staphopia/staphopia-r,0,2,"{""HTML"": 829043, ""R"": 61961}",,0,7,[],0,0,22,0,0,22,22,0,22,0 10.5281/zenodo.1255902,10.5281/zenodo.1255901,1,dataset,,24,,,,,,,,10,66,24,10,66,69,31667808901,69,31667808901 10.5281/zenodo.1256018,10.5281/zenodo.597375,1,software,https://github.com/lmsimp/bioc-pRoloc-hyperLOPIT-workflow,0,1,"{""TeX"": 302858, ""Shell"": 4876, ""R"": 1435, ""Makefile"": 745}",,3,4,[],3,0,28,0,0,43,50,0,31,0 10.5281/zenodo.1256861,10.5281/zenodo.1037438,1,software,https://github.com/hbc/bcbioRNASeq,12,16,"{""R"": 210295, ""TeX"": 39667, ""Shell"": 3241, ""CSS"": 55}",MIT License,30,5,"[bioinformatics, bioconductor, s4, rnaseq, deseq2, tximport]",30,7,24,505,40,65,78,1470768163,26,60459960 10.5281/zenodo.1256867,10.5281/zenodo.1256866,1,dataset,,0,,,,,,,,0,19,0,0,19,20,0,20,0 10.5281/zenodo.1256868,10.5281/zenodo.1256868,1,software,https://github.com/RTRichar/Zeale_COI_Database,0,0,"{""Python"": 14813}",,2,2,[],2,0,20,0,0,20,22,0,22,0 10.5281/zenodo.1256892,10.5281/zenodo.1256891,1,software,,2,,,,,,,,2,4,2,2,4,4,6556,4,6556 10.5281/zenodo.1257182,10.5281/zenodo.1257181,1,software,https://github.com/BrianCoyle/TPMScProject2017,0,0,"{""MATLAB"": 50334}",,0,0,[],0,0,2,0,0,2,2,0,2,0 10.5281/zenodo.1257560,10.5281/zenodo.1257559,1,software,https://github.com/LCOGT/banzai,0,14,"{""Python"": 418233, ""C"": 2796, ""Dockerfile"": 1113}",GNU General Public License v3.0,13,21,[backend],13,0,34,0,0,34,36,0,36,0 10.5281/zenodo.1257672,10.5281/zenodo.1257671,1,software,https://github.com/mudita11/RecPM-AOS-comparison,0,0,"{""TeX"": 1070838, ""HTML"": 1044085, ""MATLAB"": 1005758, ""C"": 813798, 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10.5281/zenodo.12646,,1,dataset,https://github.com/SE-Stuttgart/clone-study,26,0,"{""HTML"": 24012542, ""CSS"": 265804, ""Java"": 220099, ""C"": 68267, ""R"": 10690, ""Shell"": 3616, ""Rebol"": 968}",,2,5,[],2,21,174,26,21,174,186,620675354,186,620675354 10.5281/zenodo.1264662,10.5281/zenodo.1264661,1,software,https://github.com/NGDSG/BAMSI,0,0,"{""JavaScript"": 316642, ""HTML"": 39040, ""Python"": 32445, ""CSS"": 27691}",GNU General Public License v3.0,0,1,[],0,0,6,0,0,6,6,0,6,0 10.5281/zenodo.1264666,10.5281/zenodo.1264665,1,software,,2,,,,,,,,2,4,2,2,4,4,2370044,4,2370044 10.5281/zenodo.1264670,10.5281/zenodo.1264669,1,software,https://github.com/NGDSG/BAMSI-API,0,0,"{""Python"": 7238}",GNU General Public License v3.0,2,1,[],2,0,5,0,0,5,5,0,5,0 10.5281/zenodo.12669,,1,software,https://github.com/cboettig/nonparametric-bayes,5,10,"{""TeX"": 186965, ""R"": 178056, ""Dockerfile"": 1696, ""Makefile"": 805, ""Smarty"": 412}",Other,30,3,[],30,5,85,5,5,85,89,75461120,89,75461120 10.5281/zenodo.1266980,10.5281/zenodo.1266979,1,software,https://github.com/npnl/PALS,8,4,"{""Python"": 160512, ""Dockerfile"": 2074, ""Shell"": 389}",Other,1,4,"[lesion-correction, white-matter-segmentation, anatomical-mri, brain-extraction, freesurfer]",1,8,79,10,9,79,80,9993306,80,7987032 10.5281/zenodo.12705,,1,software,https://github.com/phenoscape/ontotrace,0,0,"{""Scala"": 45209}",MIT License,0,2,[],0,0,8,0,0,8,8,0,8,0 10.5281/zenodo.1270665,10.5281/zenodo.837866,1,software,https://github.com/joethorley/bioRxiv-028274,2,0,"{""R"": 45121}",MIT License,0,1,[],0,2,40,10,3,44,54,212489276,45,46407582 10.5281/zenodo.127180,,1,video,,,,,,,,,,,,,,,,,, 10.5281/zenodo.1272157,10.5281/zenodo.1272156,1,software,https://github.com/nickmckay/varveModel,6,0,"{""R"": 48603, ""Shell"": 286}",GNU General Public License v3.0,0,1,[],0,6,27,6,6,27,29,262244118,29,262244118 10.5281/zenodo.1273357,10.5281/zenodo.1273356,1,software,https://github.com/dereneaton/Canarium-GBS,0,0,"{""Jupyter Notebook"": 2353619, ""TeX"": 85558}",,0,2,[],0,0,34,0,0,34,34,0,34,0 10.5281/zenodo.12743,,1,dataset,,2,,,,,,,,1,17,2,1,17,18,2444450,18,2444450 10.5281/zenodo.12767,,1,dataset,,35,,,,,,,,18,129,35,18,129,133,7860218434,133,7860218434 10.5281/zenodo.12793,10.5281/zenodo.592970,1,dataset,https://github.com/RodrigoGM/Mmu2QTL,0,0,"{""R"": 146937, ""Shell"": 896}",Other,0,1,[],0,0,4,0,0,6,7,0,4,0 10.5281/zenodo.12798,,1,software,https://github.com/blennon/MLI_PKJ_net,12,0,"{""Python"": 51198, ""C"": 23062}",MIT License,0,1,[],0,10,66,12,10,66,69,24325104,69,24325104 10.5281/zenodo.12804,,1,software,https://github.com/kmaitland/bmedoptics-segmentation-code,1,0,"{""MATLAB"": 72238, ""M"": 2007}",,1,4,[],1,1,81,1,1,81,84,153424317,84,153424317 10.5281/zenodo.12806,10.5281/zenodo.591356,1,software,https://github.com/F1000Research/ABS-Scan,0,0,{},,0,1,[],0,0,53,0,0,81,85,0,53,0 10.5281/zenodo.1281566,10.5281/zenodo.1281565,1,publication,,88,,,,,,,,74,129,88,74,129,144,33148808,144,33148808 10.5281/zenodo.12820,,1,software,https://github.com/danieljfarrell/pvtrace,10,77,"{""Python"": 232631}",Other,50,7,"[ray-optics, python, photovoltaics, luminescent-materials, raytracing]",50,9,350,10,9,350,362,2475120,362,2475120 10.5281/zenodo.12825,10.5281/zenodo.591574,1,software,https://github.com/EducationalTestingService/skll,0,56,"{""Python"": 753207}",Other,471,47,"[machine-learning, python, scikit-learn]",471,0,52,0,0,104,110,0,53,0 10.5281/zenodo.1283157,10.5281/zenodo.1283156,1,software,https://github.com/CenterForStatistics-UGent/Additional-File-6,11,0,{},,1,1,[],1,11,52,11,11,52,54,47410132,54,47410132 10.5281/zenodo.1283274,10.5281/zenodo.1283273,1,publication,,3,,,,,,,,3,18,3,3,18,19,567466023,19,567466023 10.5281/zenodo.1283502,10.5281/zenodo.1283502,1,software,https://github.com/rpetit3/anthrax-metagenome-study,3,0,"{""Python"": 165037, ""Nextflow"": 8712, ""R"": 8073, ""Shell"": 3642, ""Dockerfile"": 1627}",MIT License,0,1,[],0,2,25,15,5,107,151,1192341489,29,242043927 10.5281/zenodo.1284242,10.5281/zenodo.1284241,1,dataset,,8,,,,,,,,4,95,8,4,95,104,239672133631,104,239672133631 10.5281/zenodo.12843,,1,dataset,,12,,,,,,,,7,71,12,7,71,77,2140628688,77,2140628688 10.5281/zenodo.1284618,10.5281/zenodo.1284617,1,dataset,,13,,,,,,,,1,29,13,1,29,30,12129038829,30,12129038829 10.5281/zenodo.1285135,10.5281/zenodo.1285134,1,software,https://github.com/dzhaobio/SMARTcleaner,0,0,"{""Perl"": 45710}",MIT License,0,0,[],0,0,10,0,0,10,10,0,10,0 10.5281/zenodo.1285151,10.5281/zenodo.1210272,1,dataset,,354,,,,,,,,28,291,362,34,326,721,424552834,625,388220449 10.5281/zenodo.1285179,10.5281/zenodo.1285178,1,dataset,,3150,,,,,,,,309,847,3150,309,847,946,28613122930,946,28613122930 10.5281/zenodo.1285516,10.5281/zenodo.1285515,1,dataset,https://github.com/dprodanov/colehopf,0,0,{},,1,1,"[symbolic-computation, computer-algebra]",1,0,13,0,0,13,13,0,13,0 10.5281/zenodo.1285550,10.5281/zenodo.1285550,1,publication,,117,,,,,,,,70,109,117,70,109,132,283006080,132,283006080 10.5281/zenodo.1285673,10.5281/zenodo.1285672,1,dataset,,16,,,,,,,,7,14,16,7,14,15,1171377,15,1171377 10.5281/zenodo.1285774,10.5281/zenodo.1285773,1,publication,,18,,,,,,,,14,25,18,14,25,26,3360399552,26,3360399552 10.5281/zenodo.1285838,10.5281/zenodo.1285837,1,dataset,,12,,,,,,,,9,26,12,9,26,27,1392519762,27,1392519762 10.5281/zenodo.1285845,10.5281/zenodo.1285845,1,software,https://github.com/inoma001/pMRI-CMRO2-diffusivity,10,0,"{""MATLAB"": 32348}",MIT License,0,0,[],0,7,19,12,8,28,41,1029243830,22,857703150 10.5281/zenodo.1285862,10.5281/zenodo.1285862,1,software,https://github.com/inoma001/process-phys-traces,4,0,"{""MATLAB"": 19264}",MIT License,0,0,[],0,4,17,4,4,17,18,32208,18,32208 10.5281/zenodo.1285962,10.5281/zenodo.1285961,1,other,,0,,,,,,,,0,5,0,0,5,5,0,5,0 10.5281/zenodo.1286304,10.5281/zenodo.1286303,1,dataset,,4,,,,,,,,4,51,4,4,51,53,333558680,53,333558680 10.5281/zenodo.1286572,10.5281/zenodo.1184126,1,software,https://github.com/oliviergimenez/sir_multievent,5,1,"{""R"": 17058}",,0,1,"[capture-recapture-models, multievent-model, tmb, r, rstats, sir, epidemiology, disease-ecology]",0,4,13,5,4,23,23,85300,13,85300 10.5281/zenodo.1286919,10.5281/zenodo.1286918,1,presentation,,505,,,,,,,,394,527,505,394,527,582,18157248740,582,18157248740 10.5281/zenodo.1287174,10.5281/zenodo.1287173,1,software,https://github.com/MicrosystemsLab/HAWKCantileverController,0,0,"{""LabVIEW"": 106809}",,0,3,[],0,0,2,0,0,2,2,0,2,0 10.5281/zenodo.1287180,10.5281/zenodo.1287179,1,software,https://github.com/MicrosystemsLab/HAWK,0,0,"{""C++"": 679316, ""C"": 3717}",,0,5,[],0,0,3,0,0,3,3,0,3,0 10.5281/zenodo.1287230,10.5281/zenodo.1287229,1,software,,9,,,,,,,,9,106,9,9,106,114,842787,114,842787 10.5281/zenodo.1287836,10.5281/zenodo.1287835,1,lesson,,125,,,,,,,,106,661,125,106,661,693,329226500,693,329226500 10.5281/zenodo.1287921,10.5281/zenodo.591597,1,software,https://github.com/nipy/nibabel,5,165,"{""Python"": 2401283, ""Makefile"": 7681, ""Shell"": 4790, ""PowerShell"": 2988, ""MATLAB"": 2702}",Other,261,42,[],261,4,92,92,14,541,674,288534681,110,21782990 10.5281/zenodo.1287938,10.5281/zenodo.1287937,1,software,https://github.com/cjlortie/Carrizo_telemetry_Ecology_and_Evolution,2,0,"{""HTML"": 4774673, ""R"": 5017}",,0,1,[],0,2,18,12,8,69,85,242596144,21,39625514 10.5281/zenodo.12880,10.5281/zenodo.592855,1,software,https://github.com/dgrapov/MetaMapR,3,36,"{""HTML"": 80202, ""CSS"": 3093, ""JavaScript"": 1368}",Other,33,13,[],33,3,40,3,3,49,50,49598583,40,49598583 10.5281/zenodo.1288574,10.5281/zenodo.1288573,1,software,https://github.com/ohsOllila/ProteinDynamics,4,0,"{""TeX"": 448097, ""MATLAB"": 28160, ""Python"": 17768, ""Shell"": 4355, ""Awk"": 1692, ""M"": 155}",,0,1,[],0,3,13,4,3,13,18,104961708,18,104961708 10.5281/zenodo.128861,,1,video,,6,,,,,,,,2,9,6,2,9,10,89567974,10,89567974 10.5281/zenodo.1288883,10.5281/zenodo.1288883,1,software,https://github.com/wilkelab/influenza_codon_usage,5,0,"{""Python"": 5555, ""Shell"": 415}",,0,2,[],0,5,30,6,6,42,46,96167492,31,77694505 10.5281/zenodo.1289383,10.5281/zenodo.1289382,1,dataset,,7,,,,,,,,6,69,7,6,69,74,14385996,74,14385996 10.5281/zenodo.1289429,10.5281/zenodo.1289428,1,dataset,,73,,,,,,,,16,24,73,16,24,25,155669563,25,155669563 10.5281/zenodo.128996,,1,image,,0,,,,,,,,0,4,0,0,4,5,0,5,0 10.5281/zenodo.1289984,10.5281/zenodo.1289983,1,publication,,2,,,,,,,,2,19,2,2,19,23,90538730,23,90538730 10.5281/zenodo.129037,,1,dataset,,0,,,,,,,,0,17,0,0,17,17,0,17,0 10.5281/zenodo.129038,,1,video,,14,,,,,,,,12,20,14,12,20,20,187467561,20,187467561 10.5281/zenodo.1290638,10.5281/zenodo.1290637,1,software,https://github.com/ANAGEO/OSM_Streetblocks_extraction,1,2,"{""Jupyter Notebook"": 83079}",MIT License,7,1,[],7,1,20,1,1,20,22,24699634,22,24699634 10.5281/zenodo.1290642,10.5281/zenodo.1290641,1,software,https://github.com/tgrippa/Street_blocks_features_computation,2,0,"{""Jupyter Notebook"": 8847860}",MIT License,2,1,[],2,2,12,2,2,12,12,1901630,12,1901630 10.5281/zenodo.1290654,10.5281/zenodo.1290653,1,dataset,,22,,,,,,,,10,98,22,10,98,103,3216514458,103,3216514458 10.5281/zenodo.1290656,10.5281/zenodo.1290655,1,software,https://github.com/stacs-cp/cp2018-tabulation,0,0,"{""Java"": 1950004, ""TeX"": 202585, ""R"": 11740, ""Shell"": 5400}",,0,7,[],0,0,2,0,0,2,2,0,2,0 10.5281/zenodo.1290800,10.5281/zenodo.1290799,1,dataset,,43,,,,,,,,19,166,43,19,166,172,4131811016,172,4131811016 10.5281/zenodo.1291212,10.5281/zenodo.1291211,1,software,https://github.com/Niemeyer-Research-Group/hSweep,3,0,"{""C++"": 471707, ""Python"": 62962, ""Cuda"": 61727, ""Shell"": 7915, ""Makefile"": 3636, ""HTML"": 3608, ""C"": 168}",MIT License,0,2,"[scientific-computing, gpu, numerical-methods, cluster-computing, mpi]",0,3,4,3,3,4,5,5601381,5,5601381 10.5281/zenodo.1291340,10.5281/zenodo.1069614,1,software,https://github.com/jaroslavmerc/corrlab,4,0,{},GNU General Public License v3.0,0,1,"[correlation, astronomy, astrophysics, data-analysis, correlation-coefficient, period]",0,4,79,4,4,82,85,23763660,81,23763660 10.5281/zenodo.1291385,10.5281/zenodo.1291384,1,dataset,,8,,,,,,,,5,50,10,6,50,52,60189490,50,28046368 10.5281/zenodo.1291389,10.5281/zenodo.1291388,1,dataset,,14,,,,,,,,8,64,14,8,64,67,25247719,67,25247719 10.5281/zenodo.1291631,10.5281/zenodo.593914,1,software,https://github.com/AndrewAnnex/SpiceyPy,2,45,"{""Python"": 952906, ""Batchfile"": 1111}",MIT License,126,22,"[python, nasa, toolkit, spice, space, ephemeris, navigation]",126,2,50,7,4,162,180,2091460,53,542990 10.5281/zenodo.1291729,10.5281/zenodo.1291729,1,dataset,,231,,,,,,,,162,821,231,162,821,887,473760323421,887,473760323421 10.5281/zenodo.1292095,10.5281/zenodo.1292095,1,software,https://github.com/ropensci/DataPackageR,3,16,"{""R"": 132612, ""TeX"": 1276}",Other,108,14,"[r, r-package, reproducibility, rstats, peer-reviewed]",108,2,9,81,18,118,132,24887309,12,1417212 10.5281/zenodo.1292315,10.5281/zenodo.592480,1,software,https://github.com/tardis-sn/tardis,4,128,"{""Python"": 598713, ""C"": 149292, ""C++"": 12034, ""Shell"": 3407}","BSD 3-Clause ""New"" or ""Revised"" License",61,24,"[science, astrophysics, python, c]",61,4,100,21,8,171,209,38258169,112,7602676 10.5281/zenodo.1292355,10.5281/zenodo.1292354,1,dataset,,15,,,,,,,,10,11,15,10,11,11,104147097,11,104147097 10.5281/zenodo.1292457,10.5281/zenodo.1240436,1,software,,3,,,,,,,,3,9,6,5,27,29,77077176,9,38538834 10.5281/zenodo.1292541,10.5281/zenodo.597139,1,software,https://github.com/jernejule/non-coinciding_cDNA_starts,8,0,"{""R"": 29728, ""Python"": 27554, ""Shell"": 22073}",,2,3,[],2,8,51,9,9,77,78,202423558,51,202394472 10.5281/zenodo.1292901,10.5281/zenodo.1292901,1,software,https://github.com/craddm/eegUtils,5,7,"{""R"": 392378}",MIT License,39,6,"[eeg, eeg-signals-processing, eeg-analysis, eeg-signals, eeg-data, r, rstats]",39,4,17,20,12,76,100,206431675,19,70652295 10.5281/zenodo.1293045,10.5281/zenodo.1293044,1,other,https://github.com/fishymary/Hawaii_regimes,22,0,"{""HTML"": 2758274}",,0,1,[],0,21,256,22,21,256,265,34598432,265,34598432 10.5281/zenodo.1293048,10.5281/zenodo.1293047,1,software,https://github.com/kheegan/tomo_mapsn,0,0,"{""IDL"": 27290, ""Prolog"": 3213}",MIT License,0,1,[],0,0,6,0,0,6,6,0,6,0 10.5281/zenodo.1293056,10.5281/zenodo.1291639,1,software,,83,,,,,,,,35,34,101,46,44,74,172720323,43,159422456 10.5281/zenodo.1293417,10.5281/zenodo.1293417,1,software,,2,,,,,,,,1,20,2,1,20,25,163252,25,163252 10.5281/zenodo.1293899,10.5281/zenodo.1293898,1,software,https://github.com/mikelove/swimdown,26,1,"{""HTML"": 10697966, ""R"": 53265, ""Shell"": 2767}",,3,1,[],3,11,27,60,41,251,273,986834572,28,427505468 10.5281/zenodo.1293914,10.5281/zenodo.1293913,1,software,https://github.com/mikelove/rnaseqDTU,26,6,"{""R"": 5654}",,5,6,[],5,10,21,32,13,59,69,543618858,21,495485094 10.5281/zenodo.12942,,1,dataset,,31,,,,,,,,27,230,31,27,230,234,26757135,234,26757135 10.5281/zenodo.12943,,1,dataset,,10,,,,,,,,6,56,10,6,56,58,1783857240,58,1783857240 10.5281/zenodo.1294660,10.5281/zenodo.1294659,1,software,https://github.com/SouthGreenPlatform/AgroLD,1,2,"{""JavaScript"": 2156354, ""Java"": 560880, ""CSS"": 225192, ""HTML"": 54348, ""PHP"": 1305, ""Ruby"": 161, ""Makefile"": 63}",,2,12,[],2,1,11,1,1,11,11,70226571,11,70226571 10.5281/zenodo.1295579,10.5281/zenodo.1218723,1,dataset,,21,,,,,,,,17,39,29,21,48,51,106464059,40,106366031 10.5281/zenodo.1296031,10.5281/zenodo.1296031,1,publication,,965,,,,,,,,825,1345,965,825,1345,1492,1855922740,1492,1855922740 10.5281/zenodo.1296371,10.5281/zenodo.595522,1,software,https://github.com/danforthcenter/plantcv,20,92,"{""Python"": 828301, ""Shell"": 3752, ""Dockerfile"": 1239}",MIT License,192,43,"[science, phenotyping, bioinformatics, plant]",192,15,46,121,61,409,450,4408916019,48,1038974140 10.5281/zenodo.1296448,10.5281/zenodo.1296447,1,software,https://github.com/staphopia/staphopia-paper,2,1,"{""TeX"": 788044, ""Python"": 9882, ""Shell"": 651}",MIT License,0,3,[],0,2,18,2,2,18,18,53245562,18,53245562 10.5281/zenodo.1296925,10.5281/zenodo.1296924,1,software,,203,,,,,,,,167,213,203,167,213,224,1731818512,224,1731818512 10.5281/zenodo.1297336,10.5281/zenodo.1297335,1,software,https://github.com/CSCfi/rems,3,4,"{""Clojure"": 1163853, ""TSQL"": 46633, ""HTML"": 973, ""CSS"": 890, ""PLSQL"": 815, ""Shell"": 419, ""Dockerfile"": 240}",MIT License,5,5,"[clojure, clojurescript, access-management]",5,2,23,9,3,26,32,68401392,26,22707726 10.5281/zenodo.12976,,1,software,https://github.com/adrian-ngo/dune-gesis,0,1,{},,1,1,[],1,0,22,0,0,22,22,0,22,0 10.5281/zenodo.1297931,10.5281/zenodo.1297930,1,dataset,,3,,,,,,,,2,31,3,2,31,36,6230867,36,6230867 10.5281/zenodo.12984,,1,software,https://github.com/tgwizard/sexymp-data,0,0,"{""JavaScript"": 56555, ""R"": 15343, ""Shell"": 663}",MIT License,0,3,[],0,0,19,0,0,19,19,0,19,0 10.5281/zenodo.1298400,10.5281/zenodo.1298399,1,software,https://github.com/CESNET/simplesamlphp,0,0,"{""PHP"": 2354823, ""CSS"": 14053, ""JavaScript"": 10763, ""HTML"": 9904, ""Perl"": 2266, ""Shell"": 2140}",Other,0,3,[],0,0,9,0,0,9,10,0,10,0 10.5281/zenodo.1298511,10.5281/zenodo.1298511,1,software,https://github.com/ess-dmsc/daquiri,0,1,"{""C++"": 797551, ""Python"": 75261, ""CMake"": 50225, ""XSLT"": 1579, ""Shell"": 1324, ""C"": 882}","BSD 2-Clause ""Simplified"" License",1,4,"[physics-detectors, data-acquisition, daq, real-time-visualisations, histogram, time-of-flight, scientific-visualization]",1,0,19,0,0,19,19,0,19,0 10.5281/zenodo.1298541,10.5281/zenodo.1169190,1,dataset,,34,,,,,,,,18,1324,37,21,1336,1375,19342343214,1361,17142264636 10.5281/zenodo.1298606,10.5281/zenodo.1298605,1,publication,,5,,,,,,,,4,26,5,4,26,28,30240516570,28,30240516570 10.5281/zenodo.1299109,10.5281/zenodo.1299109,1,dataset,,0,,,,,,,,0,24,0,0,24,26,0,26,0 10.5281/zenodo.1299173,10.5281/zenodo.1256585,1,software,https://github.com/bjodah/finitediff,0,3,"{""Python"": 41554, ""C"": 16949, ""C++"": 12479, ""Shell"": 9557, ""Fortran"": 4174, ""JavaScript"": 2225, ""Makefile"": 1529}","BSD 2-Clause ""Simplified"" License",18,4,"[finite-differences, stencil, method-of-lines, grid]",18,0,6,2,2,8,11,239160,6,0 10.5281/zenodo.1299236,10.5281/zenodo.1299235,1,software,https://github.com/AntonelliLab/restez,2,2,"{""R"": 111044, ""TeX"": 2602}",Other,16,8,"[genbank, dna, sequence, entrez, r, r-package, rstats]",16,1,12,8,3,130,136,18692172,12,4267548 10.5281/zenodo.1299250,10.5281/zenodo.1299249,1,software,https://github.com/research-software/resosuma-data,4,1,{},Other,0,1,[],0,2,2,25,6,30,52,1063837,2,25272 10.5281/zenodo.1299384,10.5281/zenodo.1299383,1,software,https://github.com/agbarnett/funding.disagree,3,0,{},,0,1,"[funding, peer-review, citations]",0,2,25,6,4,43,50,5223351,27,2292705 10.5281/zenodo.1299810,10.5281/zenodo.1299809,1,software,https://github.com/CESNET/perun-mitreid,8,8,"{""Java"": 194893, ""PLpgSQL"": 1325}",Apache License 2.0,2,4,[],2,4,9,53,16,13,17,3799820,10,502040 10.5281/zenodo.1299863,10.5281/zenodo.1299862,1,software,https://github.com/doceme/py-spidev,2,117,"{""C"": 35542, ""Python"": 1401, ""Makefile"": 197}",MIT License,255,28,[],255,2,7,2,2,7,7,44664,7,44664 10.5281/zenodo.1299990,10.5281/zenodo.1299989,1,software,https://github.com/epiviz/epiviz-chart,2,1,"{""HTML"": 469374, ""JavaScript"": 37043, ""R"": 7448}",,2,8,"[epiviz, polymer, webcomponents, genomics, data-visualization, visualization]",2,2,28,2,2,28,28,5113972,28,5113972 10.5281/zenodo.1300211,10.5281/zenodo.1300210,1,software,https://github.com/catweis/Automatic-evaluation-of-tumour-budding-in-immunohistochemically-stained-colorectal-carcinomas-,9,0,"{""MATLAB"": 43618}",,0,1,[],0,8,43,17,11,49,62,36505645,49,8109 10.5281/zenodo.1300300,10.5281/zenodo.1300299,1,software,https://github.com/CESNET/perun-services,6,32,"{""Perl"": 925537, ""Shell"": 184236, ""Python"": 17930, ""Elixir"": 17488, ""Makefile"": 10553, ""Roff"": 1631, ""Emacs Lisp"": 1265, ""PHP"": 935}","BSD 2-Clause ""Simplified"" License",7,11,[perun],7,3,14,35,11,21,24,19588253,15,3262200 10.5281/zenodo.1300336,10.5281/zenodo.1292840,1,software,https://github.com/simetenn/uncertainpy,7,12,"{""Python"": 951309, ""C"": 94131, ""AMPL"": 14087, ""Shell"": 807}",GNU General Public License v3.0,49,6,"[uncertainty-quantification, sensitivity-analysis, neuroscience, python, computational-modeling]",49,4,11,40,11,24,42,189148178,15,32177831 10.5281/zenodo.13007,,1,dataset,https://github.com/zkamvar/Sudden_Oak_Death_in_Oregon_Forests,4,1,"{""HTML"": 73029662, ""R"": 80072}",GNU General Public License v3.0,0,1,"[reproducible-paper, phytophthora, phytophthora-ramorum, plant-pathology, forestry]",0,4,111,4,4,111,120,776704860,120,776704860 10.5281/zenodo.1300761,10.5281/zenodo.1300760,1,software,https://github.com/CESNET/proxystatistics-simplesamlphp-module,7,5,"{""PHP"": 59612, ""CSS"": 720}","BSD 2-Clause ""Simplified"" License",0,3,[],0,5,9,56,19,17,22,1024680,10,95473 10.5281/zenodo.1300765,10.5281/zenodo.1300764,1,software,https://github.com/CESNET/perunauthorize-simplesamlphp-module,3,3,"{""PHP"": 8450}","BSD 2-Clause ""Simplified"" License",0,4,[],0,2,10,16,8,15,17,147736,11,27540 10.5281/zenodo.1300769,10.5281/zenodo.1300768,1,software,https://github.com/CESNET/perun-simplesamlphp-module,4,5,"{""PHP"": 235636, ""CSS"": 5556, ""JavaScript"": 1090}","BSD 2-Clause ""Simplified"" License",1,6,[perun],1,3,12,38,17,14,18,9112491,15,193188 10.5281/zenodo.1301209,10.5281/zenodo.1301208,1,software,https://github.com/gilles-didier/MolTi-DREAM,3,1,"{""C"": 202654, ""C++"": 2571, ""Makefile"": 2269, ""Shell"": 2143}",,0,1,[],0,2,23,10,5,29,39,661407,30,174207 10.5281/zenodo.1302070,10.5281/zenodo.1302070,1,software,https://github.com/tripal/tripal,0,32,"{""PLpgSQL"": 6276636, ""PHP"": 6237459, ""JavaScript"": 103470, ""TSQL"": 27705, ""CSS"": 22100, ""Hack"": 758}",GNU General Public License v2.0,34,14,"[tripal, drupal, biological-data, cms-extension, chado]",34,0,0,14,7,40,50,225227809,0,0 10.5281/zenodo.1302788,10.5281/zenodo.1218568,1,software,https://github.com/ls-cwi/eXamine,0,4,"{""Java"": 368458}",GNU General Public License v2.0,3,5,[],3,0,14,0,0,29,30,0,14,0 10.5281/zenodo.1302938,10.5281/zenodo.1302937,1,other,,90,,,,,,,,29,29,90,29,29,35,30238859,35,30238859 10.5281/zenodo.13030,,1,dataset,,310,,,,,,,,143,671,310,143,671,702,385675054126,702,385675054126 10.5281/zenodo.1303275,10.5281/zenodo.1303275,1,software,https://github.com/andreupg/findCI-toolbox,4,1,"{""MATLAB"": 29759}",GNU General Public License v3.0,0,1,[],0,3,28,4,3,28,32,111024,32,111024 10.5281/zenodo.1303316,10.5281/zenodo.1241165,1,software,https://github.com/mmondelli/swift-gecko,0,1,"{""Shell"": 16536, ""Swift"": 4543}",Apache License 2.0,0,1,[],0,0,9,0,0,20,22,0,9,0 10.5281/zenodo.1303319,10.5281/zenodo.1241163,1,software,https://github.com/mmondelli/swift-phylo,0,1,"{""C"": 3746485, ""Shell"": 1693471, ""C++"": 946031, ""Perl"": 109862, ""Roff"": 77284, ""Ruby"": 45712, ""Makefile"": 25653, ""Objective-C"": 24435, ""Python"": 15846, ""Swift"": 2446, ""Batchfile"": 299}",Apache License 2.0,0,1,[],0,0,8,0,0,15,17,0,8,0 10.5281/zenodo.13037,,1,software,https://github.com/jfaghm/OceanEddies,20,19,"{""MATLAB"": 222036, ""Python"": 19871, ""Shell"": 11585}",,36,15,[],36,19,308,20,19,308,319,996804920,319,996804920 10.5281/zenodo.1304131,10.5281/zenodo.1304130,1,software,,2,,,,,,,,2,3,2,2,3,3,686430,3,686430 10.5281/zenodo.1304254,10.5281/zenodo.1299128,1,software,https://github.com/research-software/resosuma,0,0,"{""Python"": 20249}",Apache License 2.0,0,1,[],0,0,4,0,0,5,8,0,6,0 10.5281/zenodo.1304274,10.5281/zenodo.1304273,1,dataset,,1,,,,,,,,1,18,1,1,18,21,10140159543,21,10140159543 10.5281/zenodo.1304320,10.5281/zenodo.1304319,1,software,,2,,,,,,,,2,28,2,2,28,30,49589718,30,49589718 10.5281/zenodo.1304367,10.5281/zenodo.1304366,1,software,https://github.com/nhanhocu/metamicrobiome_breastfeeding,22,0,"{""HTML"": 10446786, ""R"": 412946}",,1,0,[],1,20,76,22,20,76,87,482035730,87,482035730 10.5281/zenodo.1304930,10.5281/zenodo.1304929,1,software,https://github.com/rodrigozenun/enutri,6,0,"{""JavaScript"": 224030, ""HTML"": 166285, ""CSS"": 19856}",MIT License,1,2,"[diet, nutrition, angular, ffq, firebase]",1,5,82,6,5,82,90,64768848,90,64768848 10.5281/zenodo.1305227,10.5281/zenodo.1305226,1,software,,24,,,,,,,,22,453,24,22,453,500,640811016,500,640811016 10.5281/zenodo.1305396,10.5281/zenodo.1299249,1,software,https://github.com/research-software/resosuma-data,4,1,{},Other,0,1,[],0,2,2,25,6,30,52,1063837,7,175988 10.5281/zenodo.1305848,10.5281/zenodo.1305848,1,software,https://github.com/a-griffiths/AutoSpec,7,0,"{""Python"": 30193}","BSD 3-Clause ""New"" or ""Revised"" License",2,0,"[cross-correlation, spectra, datacube, astronomy, muse, automated, ifu]",2,5,25,42,13,44,103,234403273,36,43037841 10.5281/zenodo.1306254,10.5281/zenodo.1241462,1,software,https://github.com/mmondelli/bioworkbench,1,1,"{""HTML"": 38532289, ""R"": 29142, ""Python"": 18291, ""CSS"": 12870, ""Shell"": 5480}",Apache License 2.0,0,1,[],0,1,10,1,1,13,21,30826190,11,30826190 10.5281/zenodo.1306301,10.5281/zenodo.1218139,1,dataset,,17,,,,,,,,15,27,17,15,43,52,17016621475,29,17016621475 10.5281/zenodo.1306313,10.5281/zenodo.1252195,1,software,,1,,,,,,,,1,13,2,2,19,21,98417265,13,94258684 10.5281/zenodo.1306408,10.5281/zenodo.1306407,1,software,https://github.com/marvinm2/AOPWikiXMLparsing,1,0,"{""Python"": 16442, ""R"": 689}",,0,0,[],0,1,10,1,1,10,10,515890,10,515890 10.5281/zenodo.1306619,10.5281/zenodo.1306405,1,software,https://github.com/brennanpincardiff/drawProteins,0,4,"{""R"": 59095}",Other,7,1,[],7,0,19,1,1,22,26,89052,21,0 10.5281/zenodo.1306725,10.5281/zenodo.1306724,1,software,https://github.com/jkcarlberg/Be-synthesis-with-moog,0,0,"{""Fortran"": 83954, ""DIGITAL Command Language"": 3850}",,0,0,[],0,0,9,0,0,9,9,0,9,0 10.5281/zenodo.1306961,10.5281/zenodo.1306960,1,software,https://github.com/csdms-contrib/GrainHill,3,0,"{""Python"": 115427}",,0,4,[],0,3,16,3,3,16,16,91311,16,91311 10.5281/zenodo.1307394,10.5281/zenodo.1307393,1,other,,4,,,,,,,,4,12,4,4,12,13,61312,13,61312 10.5281/zenodo.1307765,10.5281/zenodo.1307764,1,software,https://github.com/Lab513/Zcells,7,1,"{""MATLAB"": 228758}",,1,2,[],1,7,77,7,7,77,82,74081301,82,74081301 10.5281/zenodo.1307781,10.5281/zenodo.1307780,1,dataset,,33,,,,,,,,17,174,33,17,174,181,147623210343,181,147623210343 10.5281/zenodo.1308091,10.5281/zenodo.1308090,1,dataset,,49,,,,,,,,14,37,49,14,37,41,3546495420,41,3546495420 10.5281/zenodo.1308103,10.5281/zenodo.1308102,1,software,,6,,,,,,,,5,43,6,5,43,51,9491754,51,9491754 10.5281/zenodo.1308226,10.5281/zenodo.1308225,1,dataset,,0,,,,,,,,0,26,0,0,26,28,0,28,0 10.5281/zenodo.1308236,10.5281/zenodo.1308235,1,dataset,,0,,,,,,,,0,27,0,0,27,28,0,28,0 10.5281/zenodo.1308242,10.5281/zenodo.1308241,1,dataset,,0,,,,,,,,0,16,0,0,16,17,0,17,0 10.5281/zenodo.1308685,10.5281/zenodo.1308685,1,dataset,,34,,,,,,,,17,34,34,17,34,38,9907427,38,9907427 10.5281/zenodo.1308829,10.5281/zenodo.1308828,1,software,https://github.com/Joseph7e/Biodiversity-estimates-and-ecological-interpretations-of-meiofaunal-communities,3,0,"{""Python"": 63158, ""Shell"": 119}",,0,1,[],0,3,23,3,3,23,29,87033,29,87033 10.5281/zenodo.1308874,10.5281/zenodo.1308873,1,software,https://github.com/CESNET/perun,3,53,"{""Java"": 15584119, ""Perl"": 801245, ""JavaScript"": 190155, ""HTML"": 155422, ""CSS"": 97315, ""PLSQL"": 84213, ""Shell"": 29132, ""PHP"": 5902, ""PLpgSQL"": 5267, ""FreeMarker"": 380}","BSD 2-Clause ""Simplified"" License",38,18,"[perun, identity]",38,2,16,20,8,17,19,258291984,17,37845690 10.5281/zenodo.1308881,10.5281/zenodo.1308880,1,software,https://github.com/hms-dbmi/higlass,12,28,"{""JavaScript"": 1301487, ""HTML"": 43987, ""CSS"": 32089, ""Python"": 8131, ""Shell"": 1611}",MIT License,120,25,"[genomics, visualization, higlass, hi-c, gehlenborglab]",120,8,21,197,53,109,196,3810132750,21,182116956 10.5281/zenodo.1308901,10.5281/zenodo.1308899,1,software,https://github.com/hms-dbmi/higlass-website,6,5,"{""HTML"": 232678, ""CSS"": 31106, ""JavaScript"": 25506}",MIT License,3,11,"[hi-c, higlass, website, matrix, gehlenborglab]",3,4,24,40,13,43,63,493744388,26,74059644 10.5281/zenodo.1308944,10.5281/zenodo.1308944,1,software,https://github.com/hms-dbmi/higlass-server,0,10,"{""Python"": 244089, ""Jupyter Notebook"": 23036, ""Shell"": 2780, ""Dockerfile"": 1396}",MIT License,13,21,"[higlass, hi-c, gehlenborglab]",13,0,39,0,0,39,41,0,41,0 10.5281/zenodo.1308946,10.5281/zenodo.1308946,1,software,https://github.com/hms-dbmi/higlass-docker,1,6,"{""Shell"": 5552, ""Python"": 4287}",MIT License,11,6,"[higlass, hi-c, gehlenborglab]",11,1,42,1,1,42,44,16958,44,16958 10.5281/zenodo.1308948,10.5281/zenodo.1308948,1,software,https://github.com/hms-dbmi/higlass-manage,0,5,"{""Python"": 40635, ""Shell"": 3223}",MIT License,8,4,"[higlass, gehlenborglab]",8,0,28,0,0,28,28,0,28,0 10.5281/zenodo.1308965,10.5281/zenodo.1308964,1,dataset,,0,,,,,,,,0,28,0,0,28,29,0,29,0 10.5281/zenodo.1309837,10.5281/zenodo.1309836,1,dataset,,100,,,,,,,,3,26,100,3,26,26,33011243624,26,33011243624 10.5281/zenodo.1309975,10.5281/zenodo.1309974,1,software,https://github.com/ryanoelkers/DIA,0,6,"{""C"": 50398, ""Python"": 35161, ""IDL"": 22992, ""Prolog"": 1839}",MIT License,3,2,[],3,0,10,0,0,10,13,0,13,0 10.5281/zenodo.1310715,10.5281/zenodo.1306111,1,software,https://github.com/williamjameshandley/fgivenx,8,3,"{""Python"": 66771, ""TeX"": 6533}",MIT License,2,3,"[bayesian-inference, astrostatistics, astrophysics, cosmology, statistics, matplotlib, plotting]",2,4,16,63,11,59,75,26850752,17,744440 10.5281/zenodo.1310873,10.5281/zenodo.1310872,1,software,https://github.com/RafalSkolasinski/simulation-codes-arxiv-1806.01815,4,0,"{""Jupyter Notebook"": 12004009, ""Python"": 23199}","BSD 2-Clause ""Simplified"" License",0,1,[],0,4,11,4,4,11,14,24991508,14,24991508 10.5281/zenodo.1310984,10.5281/zenodo.1310983,1,software,,5,,,,,,,,5,30,5,5,30,31,1293340,31,1293340 10.5281/zenodo.1311205,10.5281/zenodo.1311205,1,dataset,,7,,,,,,,,5,27,7,5,27,29,74901813,29,74901813 10.5281/zenodo.1311214,10.5281/zenodo.1311213,1,software,,5,,,,,,,,5,19,5,5,19,21,17235,21,17235 10.5281/zenodo.1311274,10.5281/zenodo.1311273,1,dataset,,0,,,,,,,,0,21,0,0,21,22,0,22,0 10.5281/zenodo.1311362,10.5281/zenodo.1311361,1,other,,5,,,,,,,,3,18,5,3,18,19,3502211565,19,3502211565 10.5281/zenodo.1311586,10.5281/zenodo.1311585,1,software,https://github.com/HSBsurfacecreation/Hue-Saturation-Brightness-based-surface-creation,1,0,"{""Python"": 93186}",Other,0,0,[],0,1,21,1,1,21,21,29433887,21,29433887 10.5281/zenodo.1311641,10.5281/zenodo.1245663,1,other,,74,,,,,,,,58,139,75,59,157,167,25150487983,148,24487261486 10.5281/zenodo.1311647,10.5281/zenodo.1265881,1,other,,28,,,,,,,,27,63,28,27,69,75,10437513828,68,10437513828 10.5281/zenodo.1311757,10.5281/zenodo.1311756,1,dataset,,0,,,,,,,,0,19,0,0,19,20,0,20,0 10.5281/zenodo.13121,10.5281/zenodo.592657,1,software,https://github.com/JEK-III/ResearcherDataPubPerceptions,0,1,{},MIT License,0,1,[],0,0,29,0,0,51,53,0,30,0 10.5281/zenodo.1312275,10.5281/zenodo.1312274,1,software,https://github.com/npmurphy/CRNSynthesisFigures,3,0,"{""Python"": 22929, ""MATLAB"": 14625}",MIT License,1,2,[],1,3,19,3,3,19,19,250152042,19,250152042 10.5281/zenodo.1312851,10.5281/zenodo.1312850,1,software,,7,,,,,,,,6,35,7,6,35,37,531888,37,531888 10.5281/zenodo.1312885,10.5281/zenodo.1312885,1,software,https://github.com/mzur/Mask_RCNN,0,0,"{""Python"": 194269}",Other,0,1,[],0,0,20,0,0,20,20,0,20,0 10.5281/zenodo.13129,,1,publication,,18,,,,,,,,18,12,18,18,12,12,24142482,12,24142482 10.5281/zenodo.1312983,10.5281/zenodo.1312982,1,software,,2,,,,,,,,2,35,2,2,35,39,24678236,39,24678236 10.5281/zenodo.1313203,10.5281/zenodo.1313203,1,software,,22,,,,,,,,11,66,35,16,103,132,843080100,81,526210128 10.5281/zenodo.1313694,10.5281/zenodo.1313693,1,publication,,40,,,,,,,,30,79,40,30,79,83,195210204,83,195210204 10.5281/zenodo.1313705,10.5281/zenodo.1313704,1,software,,6,,,,,,,,4,18,6,4,18,18,220506,18,220506 10.5281/zenodo.1313718,10.5281/zenodo.1313717,1,software,https://github.com/johwiebe/stn,4,1,"{""Python"": 168330}",MIT License,1,0,[],1,3,19,4,3,19,21,547952,21,547952 10.5281/zenodo.1313859,10.5281/zenodo.1313858,1,software,,48,,,,,,,,47,978,48,47,978,1144,67390412352,1144,67390412352 10.5281/zenodo.1313915,10.5281/zenodo.1313914,1,software,https://github.com/Oshlack/STRetch,10,12,"{""Python"": 54285, ""Groovy"": 15998, ""Shell"": 15986, ""R"": 6195, ""Awk"": 183}",MIT License,37,4,[],37,7,10,40,17,13,16,5153076,11,340610 10.5281/zenodo.1314351,10.5281/zenodo.1314351,1,software,https://github.com/rzcao/inverse_matrix_phase_algorithm,33,0,"{""MATLAB"": 37409}",MIT License,0,0,[],0,28,157,46,37,187,227,295493081,183,212574648 10.5281/zenodo.1314743,10.5281/zenodo.1314742,1,software,https://github.com/markrobinsonuzh/scRNAseq_clustering_comparison,50,9,"{""HTML"": 9722757, ""R"": 213834, ""Makefile"": 23897}",MIT License,20,5,[],20,43,190,63,49,201,225,440799586,209,349759000 10.5281/zenodo.1315003,10.5281/zenodo.1315003,1,dataset,,32,,,,,,,,5,16,32,5,16,17,346198740,17,346198740 10.5281/zenodo.1315327,10.5281/zenodo.1315326,1,other,,3,,,,,,,,3,30,3,3,30,32,106701846,32,106701846 10.5281/zenodo.13159,10.5281/zenodo.591556,1,software,https://github.com/csu-hmc/GaitAnalysisToolKit,13,20,"{""Python"": 225499, ""MATLAB"": 35687, ""Shell"": 2067, ""Ruby"": 857}",Other,40,11,"[biomechanics, gait, python, control]",40,13,150,15,15,183,191,24148229,153,20929311 10.5281/zenodo.1316912,10.5281/zenodo.1311660,1,dataset,https://github.com/MarijaMatejcic/Matejcic-et-al_2018,14,0,"{""MATLAB"": 291099, ""Mathematica"": 288542, ""HTML"": 108293}",MIT License,0,1,[],0,9,50,17,10,64,74,14704444,58,10875502 10.5281/zenodo.1317007,10.5281/zenodo.1317006,1,dataset,,3,,,,,,,,3,23,3,3,23,26,2749485,26,2749485 10.5281/zenodo.1317575,10.5281/zenodo.1304348,1,software,https://github.com/USDA-ARS-GBRU/itsxpress,18,2,"{""Python"": 45344}",Other,2,4,[],2,12,63,88,24,116,144,186325400,72,37613520 10.5281/zenodo.1317579,10.5281/zenodo.1317578,1,software,https://github.com/USDA-ARS-GBRU/q2_itsxpress,14,3,"{""Python"": 29943, ""TeX"": 8064}",Other,4,1,[],4,8,43,64,27,81,91,32896202,46,4936246 10.5281/zenodo.1317585,10.5281/zenodo.1317584,1,software,https://github.com/USDA-ARS-GBRU/itsxpress-paper,8,0,"{""Shell"": 9175, ""Python"": 7453, ""R"": 5144}",Other,0,2,[],0,5,21,8,5,21,22,109728,22,109728 10.5281/zenodo.1318243,10.5281/zenodo.1318242,1,software,,3,,,,,,,,2,15,3,2,15,15,17673,15,17673 10.5281/zenodo.1318245,10.5281/zenodo.1318244,1,software,https://github.com/tatumdmortimer/core-genome-alignment,8,2,"{""Python"": 46861, ""R"": 1036}",MIT License,14,4,[],14,4,15,8,4,15,16,200456,16,200456 10.5281/zenodo.1318958,10.5281/zenodo.1304085,1,software,https://github.com/gtonkinhill/rhierbaps,6,1,"{""R"": 33270}",Other,10,3,"[population-genomics, population-genetics, population-structure, r]",10,3,35,8,3,41,47,4167194,38,3242778 10.5281/zenodo.13190,,1,software,https://github.com/dacb/variableO2_illumina_analyses,1,0,"{""R"": 23128, ""Shell"": 14258, ""Awk"": 2738}","BSD 3-Clause ""New"" or ""Revised"" License",1,1,[],1,1,20,1,1,20,20,47397,20,47397 10.5281/zenodo.1319564,10.5281/zenodo.1319564,1,software,https://github.com/junzis/meteo-particle-model,6,4,"{""Python"": 63230, ""Jupyter Notebook"": 4370, ""HTML"": 962}",GNU General Public License v3.0,8,4,"[adsb, ads-b, modes, mode-s, wind, meterology]",8,4,10,6,4,10,10,341265732,10,341265732 10.5281/zenodo.1319653,10.5281/zenodo.1319022,1,publication,,78,,,,,,,,67,94,112,89,110,138,800171174,109,555997182 10.5281/zenodo.13197,,1,software,https://github.com/CosmologyTaskForce/CoChiSquare,4,0,"{""Mathematica"": 2816985, ""TeX"": 61979, ""Python"": 10980}",,2,0,[],2,4,16,4,4,16,19,14049236,19,14049236 10.5281/zenodo.1319732,10.5281/zenodo.1169393,1,dataset,,72,,,,,,,,3,34,89,3,49,55,21111769032,38,15025651255 10.5281/zenodo.1320141,10.5281/zenodo.1320140,1,dataset,,254,,,,,,,,7,54,254,7,54,60,6352073698,60,6352073698 10.5281/zenodo.1320288,10.5281/zenodo.1320288,1,dataset,,112,,,,,,,,48,97,112,48,97,111,495246193,111,495246193 10.5281/zenodo.1320424,10.5281/zenodo.1169405,1,software,https://github.com/tomsasani/vacv-ont-manuscript,5,1,"{""Python"": 34098}",MIT License,0,2,[],0,3,16,7,3,21,25,116258,19,86190 10.5281/zenodo.1320503,10.5281/zenodo.1312891,1,software,https://github.com/epilog-tool/epilog,6,0,"{""Java"": 505383, ""ANTLR"": 4102}",GNU General Public License v3.0,2,2,"[science-research, bioinformatics-tool, modeling-tool, simulation-tool, cellular-automata]",2,3,31,12,3,48,64,5047048,37,2523966 10.5281/zenodo.1320982,10.5281/zenodo.1320981,1,software,https://github.com/slimsuite/SLiMEnrich,4,1,"{""R"": 96671}",GNU Lesser General Public License v3.0,2,2,[],2,2,15,4,2,15,15,9055228,15,9055228 10.5281/zenodo.1321024,10.5281/zenodo.596479,1,dataset,https://github.com/clld/glottolog,35,54,"{""TeX"": 220744264}",Other,33,12,"[glottolog, linguistics]",33,30,400,116,79,796,956,8901992281,457,2690658670 10.5281/zenodo.1321176,10.5281/zenodo.1321175,1,software,,5,,,,,,,,5,68,5,5,68,80,617197205,80,617197205 10.5281/zenodo.1321299,10.5281/zenodo.1198705,1,software,https://github.com/taebong/FLIM-Interactive-Data-Analysis,7,1,"{""MATLAB"": 806192, ""C"": 12315, ""M"": 12022, ""HTML"": 5007, ""Objective-C"": 147}",GNU General Public License v3.0,0,1,[],0,4,29,11,5,40,49,194174392,32,78896300 10.5281/zenodo.1321300,10.5281/zenodo.1198702,1,software,https://github.com/taebong/AuroraConcentrationAnalysis,6,1,"{""Jupyter Notebook"": 527881}",GNU General Public License v3.0,0,1,[],0,3,17,8,3,22,28,2012050,19,1527510 10.5281/zenodo.1321337,10.5281/zenodo.1321337,1,publication,,37,,,,,,,,10,42,37,10,42,50,12534117566,50,12534117566 10.5281/zenodo.13217,10.5281/zenodo.591637,1,software,https://github.com/rdkit/rdkit,6,303,"{""C++"": 10433667, ""Python"": 3795995, ""CMake"": 746762, ""Java"": 320728, ""Jupyter Notebook"": 240615, ""C"": 228093, ""Yacc"": 58840, ""LLVM"": 38937, ""TSQL"": 35212, ""HTML"": 20217, ""JavaScript"": 13644, ""Makefile"": 10552, ""Shell"": 10236, ""Fortran"": 7661, ""C#"": 6745, ""Smarty"": 5864, ""Lex"": 4508, ""SMT"": 3010, ""Dockerfile"": 2034, ""QMake"": 389}",Other,624,84,"[cheminformatics, c-plus-plus, python, rdkit]",624,3,13,248,32,1061,1159,7589811397,13,149564154 10.5281/zenodo.1321880,10.5281/zenodo.1321879,1,dataset,,21,,,,,,,,11,74,21,11,74,79,2728561603,79,2728561603 10.5281/zenodo.1321978,10.5281/zenodo.1321977,1,dataset,,31,,,,,,,,14,46,31,14,46,46,393112,46,393112 10.5281/zenodo.13223,,1,software,,0,,,,,,,,0,29,0,0,29,29,0,29,0 10.5281/zenodo.13225,,1,dataset,,0,,,,,,,,0,17,0,0,17,17,0,17,0 10.5281/zenodo.13226,,1,software,,1,,,,,,,,1,11,1,1,11,12,6269780,12,6269780 10.5281/zenodo.1322831,10.5281/zenodo.1322830,1,software,https://github.com/anthofflab/mimi-page-2009.jl,9,5,"{""Julia"": 179858}",MIT License,3,9,[],3,5,26,9,5,29,33,5496201,30,5496201 10.5281/zenodo.1323149,10.5281/zenodo.1323148,1,software,https://github.com/Arslan90/PyServerGeneric,8,0,"{""Python"": 53131}",,0,1,[],0,4,2,8,4,2,4,122599080,4,122599080 10.5281/zenodo.1323150,10.5281/zenodo.1227306,1,software,https://github.com/Arslan90/mixim,14,0,"{""C++"": 3177336, ""Python"": 79395, ""Shell"": 54795, ""TeX"": 40657, ""C"": 35651, ""Perl"": 35142, ""R"": 22281, ""FreeMarker"": 21292, ""Mathematica"": 5873}",,0,1,[],0,10,38,17,11,42,54,2576383183,45,2121728602 10.5281/zenodo.1323366,10.5281/zenodo.1323365,1,dataset,,7,,,,,,,,2,48,7,2,48,50,13492173261,50,13492173261 10.5281/zenodo.1323601,10.5281/zenodo.1157922,1,software,,46,,,,,,,,18,30,118,46,63,80,3602102908,34,2327737220 10.5281/zenodo.1323665,10.5281/zenodo.1323665,1,software,https://github.com/mwegrzyn/thoughtExperiment,6,0,"{""Jupyter Notebook"": 25080336, ""OpenEdge ABL"": 1703575, ""TeX"": 108968}",,0,1,"[fmri, decoding, brain, mvpa, mind-reading, neurosynth, fmri-data, cognitive-processes, similarity-metric, brain-activity]",0,4,34,10,6,38,47,806119670,35,465589902 10.5281/zenodo.1323827,10.5281/zenodo.1323827,1,software,https://github.com/ncborcherding/TRGAted,11,1,"{""HTML"": 2252779, ""R"": 49945}",,4,0,[],4,9,60,11,9,60,63,149448596,63,149448596 10.5281/zenodo.1323925,10.5281/zenodo.1323924,1,software,https://github.com/anthofflab/paper-2018-mimi-page-replication,6,1,"{""Julia"": 9202}",,0,6,[],0,5,53,6,5,53,54,18935784,54,18935784 10.5281/zenodo.1324189,10.5281/zenodo.1119286,1,software,https://github.com/cldf/pycldf,6,4,"{""Python"": 75193, ""TeX"": 128}",Apache License 2.0,3,8,[],3,3,12,10,3,14,18,1166024,16,358176 10.5281/zenodo.1324576,10.5281/zenodo.1324575,1,software,https://github.com/SaskiaFreytag/cluster_benchmarking_code,10,0,"{""R"": 183762}",,7,2,[],7,8,76,18,15,111,125,106393748,83,58794380 10.5281/zenodo.13257,,1,dataset,,5,,,,,,,,4,37,5,4,37,37,9222844706,37,9222844706 10.5281/zenodo.1325945,10.5281/zenodo.786228,1,software,,11,,,,,,,,4,30,17,4,47,57,18662960,37,14114296 10.5281/zenodo.1326860,10.5281/zenodo.1326859,1,software,https://github.com/tpq/balance,11,0,"{""R"": 34683}",,1,2,[],1,7,29,11,7,29,32,1670911,32,1670911 10.5281/zenodo.1326942,10.5281/zenodo.1218805,1,dataset,https://github.com/akxen/egrimod-nem-dataset,54,0,{},Creative Commons Attribution 4.0 International,0,1,[],0,48,199,89,57,268,366,120833423,231,74208420 10.5281/zenodo.13281,,1,dataset,,13,,,,,,,,1,15,13,1,15,15,3807700895,15,3807700895 10.5281/zenodo.1328175,10.5281/zenodo.1328175,1,software,https://github.com/ejhigson/dyPolyChord,2,2,"{""Python"": 109623}",MIT License,10,2,"[nested-sampling, dynamic-nested-sampling]",10,1,0,47,23,50,56,3007248,0,134254 10.5281/zenodo.13282,,1,dataset,,1,,,,,,,,1,20,1,1,20,20,1389,20,1389 10.5281/zenodo.13285,,1,dataset,,100,,,,,,,,13,21,100,13,21,25,35816073591,25,35816073591 10.5281/zenodo.13286,,1,dataset,,0,,,,,,,,0,26,0,0,26,26,0,26,0 10.5281/zenodo.13287,,1,dataset,,1,,,,,,,,1,19,1,1,19,19,189,19,189 10.5281/zenodo.1329513,10.5281/zenodo.1329513,1,software,https://github.com/ejhigson/nestcheck,2,3,"{""Python"": 225965}",MIT License,8,2,"[nested-sampling, dynamic-nested-sampling, bayesian-inference, error-analysis, sampling-error, python]",8,1,0,55,22,41,50,10356528,0,370762 10.5281/zenodo.1330834,10.5281/zenodo.1330834,1,software,https://github.com/bmds-lab/DMI,7,0,"{""Python"": 27200, ""Java"": 7572, ""Shell"": 6372, ""C"": 5518}",GNU General Public License v3.0,0,1,[],0,4,21,7,4,21,23,366723,23,366723 10.5281/zenodo.1334518,10.5281/zenodo.1334517,1,video,,11,,,,,,,,10,26,11,10,26,33,2482771786,33,2482771786 10.5281/zenodo.13392,,1,dataset,,55,,,,,,,,6,57,55,6,57,63,7941302729,63,7941302729 10.5281/zenodo.13393,,1,dataset,,11,,,,,,,,5,52,11,5,52,52,344722860,52,344722860 10.5281/zenodo.1340681,10.5281/zenodo.595888,1,software,https://github.com/PositroniumSpectroscopy/mc_sspals,6,0,"{""Jupyter Notebook"": 619678, ""Python"": 24601}",Other,0,2,"[monte-carlo-simulation, jupyter-notebook, positronium]",0,4,26,12,7,42,55,7503166,34,3907536 10.5281/zenodo.1340690,10.5281/zenodo.1340689,1,software,https://github.com/dgerosa/spops,4,0,"{""Python"": 8264, ""Shell"": 190}",MIT License,1,1,[],1,2,24,7,4,28,37,57515,32,33140 10.5281/zenodo.1340743,10.5281/zenodo.1340743,1,publication,,7,,,,,,,,5,35,7,5,35,42,13011828152,42,13011828152 10.5281/zenodo.1341244,10.5281/zenodo.1298588,1,software,https://github.com/joelbader/fast_allvsall_scripts,3,0,"{""Python"": 9283}",MIT License,0,2,[],0,3,47,5,3,51,60,41798,51,25062 10.5281/zenodo.1342126,10.5281/zenodo.1342125,1,software,,6,,,,,,,,4,28,6,4,28,33,98147664,33,98147664 10.5281/zenodo.1342485,10.5281/zenodo.1342484,1,software,https://github.com/NCBI-Hackathons/NovoGraph,6,2,"{""Perl"": 168268, ""C++"": 64182, ""Makefile"": 1254}",MIT License,27,13,[],27,3,48,6,3,48,50,608058,50,608058 10.5281/zenodo.1342557,10.5281/zenodo.1342556,1,software,,23,,,,,,,,21,101,23,21,101,122,97514392600,122,97514392600 10.5281/zenodo.1343587,10.5281/zenodo.1343586,1,software,,5,,,,,,,,4,37,5,4,37,41,10054460,41,10054460 10.5281/zenodo.1343591,10.5281/zenodo.1343590,1,publication,,16,,,,,,,,14,179,16,14,179,191,9822208,191,9822208 10.5281/zenodo.1343647,10.5281/zenodo.1343646,1,software,https://github.com/USDA-ARS-NWRC/WRR_2018_Hedrick,13,1,"{""Dockerfile"": 1541}",,2,1,[publication],2,8,65,13,8,65,72,66235,72,66235 10.5281/zenodo.1344923,10.5281/zenodo.1344922,1,software,https://github.com/awesomecodingskills/reconstruct_volume_from_RGB_slices,7,0,"{""Jupyter Notebook"": 33800}",,1,2,[],1,4,28,7,4,28,31,75313,31,75313 10.5281/zenodo.1345278,10.5281/zenodo.1345277,1,software,,6,,,,,,,,5,13,6,5,13,17,200112,17,200112 10.5281/zenodo.1345610,10.5281/zenodo.1345609,1,dataset,,15,,,,,,,,9,59,15,9,59,76,8160168142,76,8160168142 10.5281/zenodo.1345748,10.5281/zenodo.1345747,1,software,https://github.com/borismarin/som-codegen,4,0,"{""Python"": 14131, ""Makefile"": 439}",,1,4,[],1,2,9,4,2,9,11,1116008,11,1116008 10.5281/zenodo.1345750,10.5281/zenodo.1345749,1,software,https://github.com/LEMS/lems-domogen-maven-plugin,4,1,"{""Java"": 1694, ""Groovy"": 85}",GNU Lesser General Public License v3.0,0,1,[],0,2,13,4,2,13,15,51004,15,51004 10.5281/zenodo.1345751,10.5281/zenodo.1345751,1,software,https://github.com/NeuroML/neuroml2model,4,1,"{""Java"": 34704, ""XSLT"": 1241}",GNU General Public License v3.0,0,1,[],0,2,7,4,2,7,8,461964,8,461964 10.5281/zenodo.1345757,10.5281/zenodo.1345578,1,software,https://github.com/mark-steadman/neural-representations-of-speech,5,0,"{""MATLAB"": 35858}",,0,1,[],0,3,28,9,5,40,55,163257,33,123845 10.5281/zenodo.1346161,10.5281/zenodo.1346160,1,software,https://github.com/LEMS/jLEMS,7,7,"{""Java"": 1312241, ""HTML"": 469333, ""XSLT"": 88542, ""CSS"": 3302, ""Shell"": 250, ""Batchfile"": 237}",MIT License,7,9,[],7,4,13,7,4,13,18,8533273,18,8533273 10.5281/zenodo.1346420,10.5281/zenodo.789764,1,dataset,,18,,,,,,,,6,37,23,7,49,60,3477090758,42,2709677139 10.5281/zenodo.1346672,10.5281/zenodo.1344583,1,software,https://github.com/StevenWingett/FastQ-Screen,9,0,"{""HTML"": 627439, ""Perl"": 104399}",GNU General Public License v3.0,2,3,[],2,5,36,31,17,94,110,58906401,43,17093871 10.5281/zenodo.13497,,1,dataset,,2,,,,,,,,1,21,2,1,21,24,229348708,24,229348708 10.5281/zenodo.13498,,1,dataset,,75,,,,,,,,5,29,75,5,29,29,36808053328,29,36808053328 10.5281/zenodo.13592,,1,publication,,3,,,,,,,,2,88,3,2,88,89,85965,89,85965 10.5281/zenodo.13677,,1,software,https://github.com/chengxe/lot3d,15,1,"{""MATLAB"": 93605, ""M"": 9643, ""Mercury"": 1516}",,0,1,[],0,11,181,15,11,181,204,144589515,204,144589515 10.5281/zenodo.13687,,1,publication,,15,,,,,,,,15,25,15,15,25,26,13789485,26,13789485 10.5281/zenodo.13788,,1,software,https://github.com/TWOEARS/auditory-front-end,1,7,"{""MATLAB"": 910932, ""Mathematica"": 19347, ""C++"": 8608, ""M"": 474}",GNU General Public License v2.0,11,7,[],11,1,21,1,1,21,21,17561862,21,17561862 10.5281/zenodo.13791,,1,dataset,,19,,,,,,,,3,25,19,3,25,28,9498921873,28,9498921873 10.5281/zenodo.13814,,1,dataset,,34,,,,,,,,7,17,34,7,17,18,4041453971,18,4041453971 10.5281/zenodo.13821,,1,dataset,,6,,,,,,,,4,19,6,4,19,19,6296298,19,6296298 10.5281/zenodo.13853,,1,dataset,,11,,,,,,,,1,11,11,1,11,11,3939781166,11,3939781166 10.5281/zenodo.13866,,1,software,,2,,,,,,,,2,202,2,2,202,202,1290884,202,1290884 10.5281/zenodo.13887,,1,dataset,,4,,,,,,,,2,35,4,2,35,35,361220792,35,361220792 10.5281/zenodo.13893,10.5281/zenodo.593009,1,software,https://github.com/ftalbrecht/dune-gdt,0,1,"{""C++"": 1235738, ""CMake"": 5508}","BSD 2-Clause ""Simplified"" License",0,1,[],0,0,4,0,0,26,26,0,4,0 10.5281/zenodo.13895,10.5281/zenodo.593001,1,software,https://github.com/pymor/dune-hdd,1,1,"{""C++"": 532439, ""CMake"": 6663, ""M4"": 1969, ""Makefile"": 1260}","BSD 2-Clause ""Simplified"" License",1,5,[],1,1,3,1,1,7,7,166171,3,166171 10.5281/zenodo.13897,,1,software,https://github.com/ftalbrecht/pymor,1,0,"{""Python"": 982549, ""C++"": 2270, ""CSS"": 498, ""Shell"": 146}",Other,0,1,[],0,1,11,1,1,11,11,357768,11,357768 10.5281/zenodo.13926,10.5281/zenodo.591469,1,software,https://github.com/konrad/READemption,0,0,{},,0,1,[],0,0,5,13,5,74,81,1220351,5,0 10.5281/zenodo.13934,,1,dataset,,19,,,,,,,,3,11,19,3,11,12,701214487,12,701214487 10.5281/zenodo.13935,,1,publication,,27,,,,,,,,23,37,27,23,37,40,12251304,40,12251304 10.5281/zenodo.13942,,1,publication,,17,,,,,,,,17,177,17,17,177,200,7864421,200,7864421 10.5281/zenodo.13944,,1,dataset,,2,,,,,,,,1,70,2,1,70,72,1573906956,72,1573906956 10.5281/zenodo.13945,,1,dataset,,9,,,,,,,,1,7,9,1,7,7,2146250780,7,2146250780 10.5281/zenodo.13946,,1,dataset,,26,,,,,,,,3,50,26,3,50,51,9909877096,51,9909877096 10.5281/zenodo.13986,,1,dataset,,10,,,,,,,,10,125,10,10,125,126,26863380,126,26863380 10.5281/zenodo.1400313,10.5281/zenodo.597591,1,software,https://github.com/severinson/coded-computing-tools,7,0,"{""Python"": 342992, ""Makefile"": 217, ""Shell"": 103}",Apache License 2.0,0,1,[],0,4,11,22,5,27,29,208223716,13,169831788 10.5281/zenodo.14005,,1,software,https://github.com/cvitolo/r_fuse,1,,,,,,,,1,47,1,1,47,52,4288187,52,4288187 10.5281/zenodo.1400785,10.5281/zenodo.1400784,1,software,https://github.com/HearSys/pattern_finder_gpu,6,0,"{""Python"": 20351, ""C"": 4010}",MIT License,0,2,[],0,3,27,6,3,27,30,73914,30,73914 10.5281/zenodo.1400839,10.5281/zenodo.1400838,1,software,https://github.com/SimonEnsemble/PorousMaterials.jl,8,4,"{""Julia"": 314019, ""Shell"": 2449}",GNU General Public License v3.0,14,7,[],14,5,30,36,16,55,64,603192140,33,133707600 10.5281/zenodo.1401088,10.5281/zenodo.1401087,1,software,https://github.com/espenhgn/LFPy,6,0,"{""Python"": 648790, ""AMPL"": 2407, ""Shell"": 1151}",GNU General Public License v3.0,0,1,[],0,3,31,12,5,35,43,13063506,38,6428874 10.5281/zenodo.1401500,10.5281/zenodo.1401499,1,software,,13,,,,,,,,12,31,13,12,31,32,219388,32,219388 10.5281/zenodo.1402384,10.5281/zenodo.1402383,1,software,https://github.com/raspstephan/CBRAIN-CAM,15,18,"{""Jupyter Notebook"": 106511519, ""HTML"": 20793379, ""Python"": 134424, ""MATLAB"": 4372, ""Shell"": 1918, ""NCL"": 957}",MIT License,25,3,[],25,13,122,15,13,122,130,1156393530,130,1156393530 10.5281/zenodo.1402516,10.5281/zenodo.1402515,1,software,https://github.com/llondon6/positive,12,1,"{""Jupyter Notebook"": 6541573, ""Python"": 400091}",Other,3,3,"[data-manipulation, gravitational-waves, black-holes, quasi-normal-modes, qnms, postnewtonian, pn]",3,8,26,24,13,41,65,677212410,33,337345896 10.5281/zenodo.1402622,10.5281/zenodo.1402621,1,software,,14,,,,,,,,8,41,14,8,41,46,287074,46,287074 10.5281/zenodo.1402629,10.5281/zenodo.1402628,1,software,https://github.com/scivision/NEXRADutils,8,1,"{""Python"": 19308}",MIT License,2,2,"[nexrad, python, reflectivity, weather-radar, geoscience]",2,4,11,8,4,11,15,150808,15,150808 10.5281/zenodo.1402785,10.5281/zenodo.1402780,1,publication,,8,,,,,,,,7,44,13,10,45,61,4584408,51,2899328 10.5281/zenodo.1402959,10.5281/zenodo.1402958,1,software,https://github.com/RainCloudPlots/RainCloudPlots,17,56,"{""HTML"": 2773648, ""Jupyter Notebook"": 170914, ""MATLAB"": 12578, ""R"": 6069}",MIT License,174,18,[],174,13,140,17,13,140,149,70786555,149,70786555 10.5281/zenodo.1403221,10.5281/zenodo.1403220,1,software,https://github.com/FRESNA/powerplantmatching,20,10,"{""Jupyter Notebook"": 650180, ""Python"": 225339}",GNU General Public License v3.0,22,12,[],22,15,48,67,46,136,254,2416300824,78,366894420 10.5281/zenodo.1403805,10.5281/zenodo.1251617,1,other,,0,,,,,,,,0,11,0,0,23,29,0,12,0 10.5281/zenodo.1403919,10.5281/zenodo.1403918,1,software,https://github.com/ChenMengjie/VIPER,6,1,"{""C++"": 37592, ""R"": 33409}",MIT License,4,1,[],4,4,35,6,4,35,36,26192256,36,26192256 10.5281/zenodo.1404584,10.5281/zenodo.1306111,1,software,https://github.com/williamjameshandley/fgivenx,2,3,"{""Python"": 66771, ""TeX"": 6533}",MIT License,2,3,"[bayesian-inference, astrostatistics, astrophysics, cosmology, statistics, matplotlib, plotting]",2,1,24,63,11,59,75,26850752,26,1695164 10.5281/zenodo.1404728,10.5281/zenodo.1228603,1,software,,8,,,,,,,,7,36,11,8,54,63,1887824,38,1611800 10.5281/zenodo.14048,,1,software,https://github.com/edwbaker/AquaticInsectLightTrap,2,0,"{""Arduino"": 600}",,0,1,[],0,2,1170,2,2,1170,1279,31432538,1279,31432538 10.5281/zenodo.1404853,10.5281/zenodo.1404853,1,software,,13,,,,,,,,12,56,17,16,101,128,840261537,67,642552989 10.5281/zenodo.1404871,10.5281/zenodo.1404870,1,software,https://github.com/akuznetsova/BHL,8,0,"{""Jupyter Notebook"": 6290544, ""Python"": 10055}",GNU General Public License v3.0,0,0,[],0,5,22,8,5,22,23,35573144,23,35573144 10.5281/zenodo.1405484,10.5281/zenodo.1241074,1,dataset,,213,,,,,,,,71,213,213,71,235,259,446117319,235,446117319 10.5281/zenodo.14056,,1,software,,1,,,,,,,,1,28,1,1,28,28,40480,28,40480 10.5281/zenodo.1406067,10.5281/zenodo.1406066,1,software,https://github.com/huwangxiong/Hypermutated_gastrointestinal_cancer,5,0,"{""R"": 9308}",,0,1,[],0,3,6,5,3,6,8,1300775,8,1300775 10.5281/zenodo.14066,,1,dataset,,19,,,,,,,,6,38,19,6,38,48,4526915194,48,4526915194 10.5281/zenodo.14067,,1,dataset,,1,,,,,,,,1,5,1,1,5,5,2502,5,2502 10.5281/zenodo.14068,,1,dataset,,4,,,,,,,,1,19,4,1,19,19,2226682653,19,2226682653 10.5281/zenodo.1406840,10.5281/zenodo.1045336,1,software,https://github.com/esa/pagmo2,29,67,"{""C++"": 47667110, ""Python"": 276167, ""CMake"": 119441, ""Shell"": 13670, ""Batchfile"": 491, ""PowerShell"": 298}",Other,302,29,"[optimization, optimization-algorithms, optimization-methods, optimization-tools, parallel-computing, parallel-processing, evolutionary-algorithms, multi-objective-optimization, stochastic-optimizers, genetic-algorithm, metaheuristics, evolutionary-strategy, artificial-intelligence]",302,26,357,94,63,1579,1817,1149429450,422,374616403 10.5281/zenodo.1407225,10.5281/zenodo.1407224,1,software,,14,,,,,,,,11,49,14,11,49,72,728784,72,728784 10.5281/zenodo.1407435,10.5281/zenodo.1407434,1,software,https://github.com/jnkather/immuneTopography,10,1,"{""MATLAB"": 50711, ""Groovy"": 14969}",MIT License,0,1,[],0,7,47,10,7,47,48,8007790,48,8007790 10.5281/zenodo.1407682,10.5281/zenodo.1407681,1,dataset,,25,,,,,,,,5,45,25,5,45,54,1195009286,54,1195009286 10.5281/zenodo.1407898,10.5281/zenodo.1407897,1,software,,3,,,,,,,,2,42,3,2,42,46,99981,46,99981 10.5281/zenodo.1407972,10.5281/zenodo.1407972,1,publication,,7,,,,,,,,6,16,7,6,16,18,531156360,18,531156360 10.5281/zenodo.1408269,10.5281/zenodo.1408269,1,dataset,,33,,,,,,,,8,46,33,8,46,54,66024844246,54,66024844246 10.5281/zenodo.14084,,1,software,,0,,,,,,,,0,29,0,0,29,29,0,29,0 10.5281/zenodo.1408580,10.5281/zenodo.1317793,1,dataset,,18,,,,,,,,14,35,54,24,57,65,420552,38,169452 10.5281/zenodo.1408933,10.5281/zenodo.1408932,1,software,,13,,,,,,,,12,78,13,12,78,82,2581397,82,2581397 10.5281/zenodo.1409200,10.5281/zenodo.1409200,1,dataset,,3,,,,,,,,2,35,3,2,35,42,15369252,42,15369252 10.5281/zenodo.1410263,10.5281/zenodo.1409253,1,software,https://github.com/thomasbattram/CAD_analysis,4,0,"{""R"": 46379, ""Shell"": 437}",MIT License,0,0,[],0,2,28,11,5,29,32,483428,29,140428 10.5281/zenodo.1410429,10.5281/zenodo.1410113,1,software,https://github.com/RTH-tools/crisproff,7,1,"{""Python"": 37606}",GNU General Public License v3.0,1,0,[],1,6,26,9,6,30,45,89757961,36,89669461 10.5281/zenodo.1410437,10.5281/zenodo.1410436,1,dataset,,32,,,,,,,,7,42,32,7,42,53,616854467,53,616854467 10.5281/zenodo.1410442,10.5281/zenodo.1293913,1,software,https://github.com/mikelove/rnaseqDTU,6,6,"{""R"": 5654}",,5,6,[],5,4,39,32,13,59,69,543618858,48,48133764 10.5281/zenodo.1410443,10.5281/zenodo.1293898,1,software,https://github.com/mikelove/swimdown,34,1,"{""HTML"": 10697966, ""R"": 53265, ""Shell"": 2767}",,3,1,[],3,31,228,60,41,251,273,986834572,245,559329104 10.5281/zenodo.1410625,10.5281/zenodo.1205166,1,dataset,,38,,,,,,,,32,244,1766,704,6833,9369,63723187417214,300,1551101586134 10.5281/zenodo.1411506,10.5281/zenodo.1257462,1,dataset,,211,,,,,,,,93,215,351,132,296,346,7303573064,242,4508935098 10.5281/zenodo.1411513,10.5281/zenodo.1411512,1,software,https://github.com/SergeDieterich/MCMC_SD,8,0,"{""IDL"": 77909}",,0,1,[],0,4,35,8,4,35,45,4051712,45,4051712 10.5281/zenodo.1411871,10.5281/zenodo.1411870,1,software,https://github.com/fbarraquand/GyrfalconPtarmigan_MAR,6,0,"{""R"": 246879, ""TeX"": 12353}",GNU General Public License v3.0,0,1,[],0,3,13,6,3,13,16,7036182,16,7036182 10.5281/zenodo.1411968,10.5281/zenodo.1411967,1,software,,5,,,,,,,,5,21,5,5,21,24,1280916020,24,1280916020 10.5281/zenodo.1412608,10.5281/zenodo.1412607,1,software,https://github.com/nest/nestml,6,19,"{""Python"": 1276280, ""HTML"": 69911, ""Shell"": 19907, ""ANTLR"": 18173, ""Tcl"": 1469, ""C++"": 862}",GNU General Public License v2.0,13,9,[],13,5,15,6,5,15,17,26452392,17,26452392 10.5281/zenodo.1413539,10.5281/zenodo.1413538,1,software,https://github.com/kemplab/mESC-Intercellular-Differentiation,6,0,"{""Python"": 91236}",,1,1,[],1,4,25,6,4,25,28,9663636,28,9663636 10.5281/zenodo.1413666,10.5281/zenodo.1413665,1,dataset,,3,,,,,,,,3,37,3,3,37,47,1617447147,47,1617447147 10.5281/zenodo.1413671,10.5281/zenodo.1413670,1,software,,3,,,,,,,,2,20,3,2,20,24,1544580,24,1544580 10.5281/zenodo.141383,,1,video,,28,,,,,,,,5,10,28,5,10,10,12970709856,10,12970709856 10.5281/zenodo.1414000,10.5281/zenodo.1413999,1,software,https://github.com/Wen-Juan/Tvedora_dev_RNAseq,4,0,"{""R"": 80856, ""Shell"": 20058, ""Python"": 13929, ""Perl"": 523}",,0,1,[],0,4,22,4,4,22,27,66013480,27,66013480 10.5281/zenodo.14169,,1,publication,,2,,,,,,,,2,6,2,2,6,6,6952742,6,6952742 10.5281/zenodo.14176,,1,publication,,8,,,,,,,,7,10,8,7,10,10,12399400,10,12399400 10.5281/zenodo.14178,,1,publication,,8,,,,,,,,8,8,8,8,8,8,12834872,8,12834872 10.5281/zenodo.1418410,10.5281/zenodo.1418409,1,software,https://github.com/jaanos/sage-drg,9,0,"{""Jupyter Notebook"": 432787, ""Python"": 179969, ""Dockerfile"": 414}",MIT License,3,2,[],3,5,10,9,5,10,20,2587095,20,2587095 10.5281/zenodo.1418482,10.5281/zenodo.1418481,1,software,https://github.com/embruna/Costa-etal-PeerJ-2018,9,0,"{""R"": 108170}",MIT License,0,1,[],0,5,10,9,5,10,13,176355,13,176355 10.5281/zenodo.1418519,10.5281/zenodo.1418518,1,publication,,39,,,,,,,,18,35,39,18,35,37,895948,37,895948 10.5281/zenodo.14186,10.5281/zenodo.592939,1,software,https://github.com/nathanieljohnston/QETLAB,0,11,"{""MATLAB"": 373708}","BSD 2-Clause ""Simplified"" License",24,10,[],24,0,50,5,5,137,146,904755,50,0 10.5281/zenodo.1419150,10.5281/zenodo.1419150,1,dataset,,17,,,,,,,,15,187,17,15,187,207,3025135652,207,3025135652 10.5281/zenodo.1419184,10.5281/zenodo.1419184,1,dataset,https://github.com/samfranks/eu_meadow_birds,17,0,"{""R"": 236561}",,0,1,[],0,13,31,17,13,31,37,335476963,37,335476963 10.5281/zenodo.1419207,10.5281/zenodo.1419206,1,dataset,,26,,,,,,,,3,25,26,3,25,27,2458678322,27,2458678322 10.5281/zenodo.1419226,10.5281/zenodo.1419225,1,dataset,,18,,,,,,,,8,72,18,8,72,85,8318960421,85,8318960421 10.5281/zenodo.1419539,10.5281/zenodo.1257673,1,software,https://github.com/gitter-lab/pria_lifechem,9,0,"{""Jupyter Notebook"": 31799208, ""Python"": 517627, ""Shell"": 13676}",MIT License,3,4,"[virtual-screening, neural-network, biochemistry]",3,6,83,18,8,143,187,365586588,104,182452500 10.5281/zenodo.1419754,10.5281/zenodo.1419753,1,software,https://github.com/richteague/bettermoments,7,2,"{""Python"": 47194}",MIT License,3,4,[],3,4,53,7,4,53,56,161753319,56,161753319 10.5281/zenodo.1419971,10.5281/zenodo.1418985,1,dataset,,23,,,,,,,,4,34,51,6,48,58,156231007586,36,50917279084 10.5281/zenodo.1420304,10.5281/zenodo.1420303,1,dataset,,16,,,,,,,,5,32,16,5,32,33,27626929699,33,27626929699 10.5281/zenodo.1420395,10.5281/zenodo.1420394,1,dataset,,215,,,,,,,,3,36,215,3,36,42,266977147,42,266977147 10.5281/zenodo.1420397,10.5281/zenodo.1420396,1,software,https://github.com/arcaravaggi/PeerJ_mammal_activity,9,0,"{""R"": 46232}",GNU General Public License v3.0,0,0,[],0,5,23,22,10,33,37,4304167,24,1264473 10.5281/zenodo.1420524,10.5281/zenodo.1420523,1,software,,302,,,,,,,,142,385,302,142,385,411,157090719390,411,157090719390 10.5281/zenodo.1420943,10.5281/zenodo.1420942,1,software,https://github.com/kjolley/BIGSdb,8,7,"{""Perl"": 3611400, ""JavaScript"": 183150, ""PLpgSQL"": 176218, ""CSS"": 76772, ""TSQL"": 26253, ""Python"": 14314, ""HTML"": 1630, ""PLSQL"": 495}",GNU General Public License v3.0,17,4,[],17,5,59,12,9,76,86,31468672,66,20941192 10.5281/zenodo.1421570,10.5281/zenodo.597016,1,software,https://github.com/gwpy/gwpy,6,81,"{""Python"": 1643378, ""Shell"": 11705}",GNU General Public License v3.0,262,25,"[python, gravitational-waves, gwpy, gpl]",262,3,24,126,18,210,270,193768966,33,9519726 10.5281/zenodo.1422642,10.5281/zenodo.1422642,1,software,https://github.com/sscholz-UFZ/FishInspector,21,0,"{""MATLAB"": 888799, ""HTML"": 4192}",Other,2,3,[],2,17,130,35,24,160,228,915791835,169,196506093 10.5281/zenodo.1423158,10.5281/zenodo.1423157,1,software,https://github.com/cheesema/LibAPR,0,11,"{""C++"": 533794, ""Cuda"": 80718, ""CMake"": 20823, ""C"": 8827, ""Python"": 3691, ""Shell"": 233}",Apache License 2.0,24,17,"[image-processing, microscopy, biology, multi-resolution, adaptive, sampling-methods]",24,0,32,0,0,32,43,0,43,0 10.5281/zenodo.14250,,1,publication,,7,,,,,,,,7,5,7,7,5,5,4761260,5,4761260 10.5281/zenodo.14254,,1,publication,,16,,,,,,,,16,10,16,16,10,10,35279872,10,35279872 10.5281/zenodo.14265,,1,publication,,7,,,,,,,,7,6,7,7,6,6,30647519,6,30647519 10.5281/zenodo.14298,10.5281/zenodo.593145,1,software,https://github.com/FCP-INDI/C-PAC,7,73,"{""Python"": 1996120, ""HTML"": 446813, ""JavaScript"": 182402, ""Shell"": 59212, ""CSS"": 39802, ""Gherkin"": 10100, ""Dockerfile"": 5652}","BSD 3-Clause ""New"" or ""Revised"" License",91,23,[],91,4,24,113,21,220,234,2836234784,24,96108516 10.5281/zenodo.1432722,10.5281/zenodo.1432721,1,software,,10,,,,,,,,7,28,10,7,28,43,14260760,43,14260760 10.5281/zenodo.1433886,10.5281/zenodo.1433885,1,software,,73,,,,,,,,14,33,73,14,33,34,2402320,34,2402320 10.5281/zenodo.1434071,10.5281/zenodo.1434070,1,software,,49,,,,,,,,29,94,49,29,94,97,145509925,97,145509925 10.5281/zenodo.1434147,10.5281/zenodo.597131,1,software,https://github.com/nioo-knaw/hydra,8,0,"{""Python"": 77180, ""TeX"": 21968, ""Awk"": 1335}",MIT License,0,2,"[snakemake, amplicon-sequencing, 16s, its, 18s, metagenomics, metagenomic-analysis]",0,6,50,25,19,231,257,1095451,55,780752 10.5281/zenodo.1434232,10.5281/zenodo.1434232,1,software,https://github.com/jespermaag/gganatogram,7,27,"{""R"": 66686, ""Python"": 8868}",,200,10,[],200,4,27,14,7,70,95,546921907,31,418586147 10.5281/zenodo.1434321,10.5281/zenodo.1434320,1,software,https://github.com/linhuawang/LargeGOPred,8,1,"{""Groovy"": 23976, ""Python"": 23160}",GNU General Public License v2.0,0,0,[],0,4,23,8,4,23,25,32547128,25,32547128 10.5281/zenodo.1434450,10.5281/zenodo.1434449,1,dataset,,6,,,,,,,,6,55,6,6,55,61,23358959532,61,23358959532 10.5281/zenodo.1435039,10.5281/zenodo.1435039,1,software,https://github.com/alexnater/GB_D-18-00117,8,0,"{""Perl"": 185437}",GNU General Public License v3.0,0,1,[],0,6,23,12,6,23,47,692352,37,494344 10.5281/zenodo.1436410,10.5281/zenodo.1436409,1,software,https://github.com/nducros/SPRAY,9,2,"{""MATLAB"": 70586}",,2,0,[],2,8,22,9,8,22,24,305916984,24,305916984 10.5281/zenodo.1436628,10.5281/zenodo.1436627,1,software,,23,,,,,,,,13,29,23,13,29,32,6552937,32,6552937 10.5281/zenodo.14379,,1,publication,,5,,,,,,,,5,11,5,5,11,11,2481595,11,2481595 10.5281/zenodo.14385,,1,publication,,7,,,,,,,,7,23,7,7,23,23,21855043,23,21855043 10.5281/zenodo.1438539,10.5281/zenodo.1438538,1,software,,11,,,,,,,,8,91,11,8,91,120,258224197,120,258224197 10.5281/zenodo.1438555,10.5281/zenodo.1306941,1,software,,46,,,,,,,,23,31,88,35,57,99,3762997,44,1485175 10.5281/zenodo.1439296,10.5281/zenodo.1439295,1,software,,6,,,,,,,,5,25,6,5,25,25,139446,25,139446 10.5281/zenodo.1439501,10.5281/zenodo.1439500,1,software,https://github.com/chentianran/kap-cycle,6,0,"{""Python"": 5526}",MIT License,0,1,[],0,4,3,6,4,3,4,21780,4,21780 10.5281/zenodo.14396,,1,publication,,8,,,,,,,,8,10,8,8,10,10,10952560,10,10952560 10.5281/zenodo.1440051,10.5281/zenodo.1440051,1,software,https://github.com/richteague/eddy,3,3,"{""Python"": 133188}",MIT License,4,3,[],4,2,59,9,7,104,105,44663073,59,21265671 10.5281/zenodo.1442351,10.5281/zenodo.1442350,1,software,https://github.com/kbradwell/comparative_trypanosoma_paper,9,1,"{""Perl"": 142234, ""Python"": 37933, ""Shell"": 5683, ""Perl 6"": 394}",,1,0,[],1,6,12,9,6,12,16,6691185,16,6691185 10.5281/zenodo.1442738,10.5281/zenodo.596722,1,software,https://github.com/darioizzo/audi,5,9,"{""C++"": 256087, ""CMake"": 45528, ""Python"": 36322, ""Shell"": 2818, ""Batchfile"": 491}",Other,39,7,[],39,3,11,57,9,81,96,26998032,14,2888975 10.5281/zenodo.1443416,10.5281/zenodo.802607,1,dataset,,67,,,,,,,,21,57,86,24,62,79,7401119963,62,3707925439 10.5281/zenodo.1443561,10.5281/zenodo.1245681,1,publication,,18,,,,,,,,16,109,23,18,124,136,16789078,117,16738578 10.5281/zenodo.1445313,10.5281/zenodo.1445312,1,dataset,,9,,,,,,,,7,41,9,7,41,45,9123840,45,9123840 10.5281/zenodo.14460,,1,publication,,5,,,,,,,,5,18,5,5,18,18,1559160,18,1559160 10.5281/zenodo.1446517,10.5281/zenodo.1446517,1,software,https://github.com/jonescompneurolab/hnn,3,10,"{""Python"": 822059, ""CSS"": 186790, ""Shell"": 29023, ""AMPL"": 22390, ""PowerShell"": 14502, ""Dockerfile"": 3505, ""HTML"": 2228, ""Makefile"": 235, ""Ruby"": 73}",Other,18,12,"[computational-neuroscience, eeg, meg, simulation-modeling, neocortex, brain, biophysical, neuronal-network, erp, alpha, beta, gamma, pyramidal-neuron, interneuron, human, electrophysiology, data-analysis, pyqt5, python]",18,2,44,47,23,167,192,27747699,45,5541531 10.5281/zenodo.14493,,1,publication,,5,,,,,,,,5,6,5,5,6,6,5647260,6,5647260 10.5281/zenodo.1450986,10.5281/zenodo.1450985,1,publication,,11,,,,,,,,9,27,11,9,27,31,313236,31,313236 10.5281/zenodo.1451748,10.5281/zenodo.1451747,1,dataset,,4,,,,,,,,4,515,4,4,515,558,40156,558,40156 10.5281/zenodo.1451764,10.5281/zenodo.1451763,1,software,https://github.com/sa2c/OpenQCD-AVX512,4,0,"{""C"": 3386102, ""Makefile"": 90896, ""C++"": 15682}",GNU General Public License v2.0,2,2,[],2,3,10,4,3,10,15,7290968,15,7290968 10.5281/zenodo.1451985,10.5281/zenodo.1451984,1,software,https://github.com/rhineryan/Demo_Reweight,22,2,"{""Jupyter Notebook"": 1003402, ""C++"": 32933, ""C"": 5499, ""Python"": 3065}",MIT License,0,1,[],0,20,34,22,20,34,53,4874081476,53,4874081476 10.5281/zenodo.1452005,10.5281/zenodo.592959,1,software,https://github.com/MikeHeiber/Ising_OPV,7,2,"{""C++"": 326393, ""TeX"": 4642, ""Makefile"": 3028, ""Shell"": 606}",MIT License,3,3,"[organic-semiconductors, materials-science]",3,5,12,68,19,136,151,164261885,13,69530916 10.5281/zenodo.1452073,10.5281/zenodo.1299383,1,software,https://github.com/agbarnett/funding.disagree,3,0,{},,0,1,"[funding, peer-review, citations]",0,3,21,6,4,43,50,5223351,23,2930646 10.5281/zenodo.14522,,1,publication,,37,,,,,,,,36,16,37,36,16,17,78377174,17,78377174 10.5281/zenodo.14531,,1,publication,,2,,,,,,,,2,8,2,2,8,8,2057424,8,2057424 10.5281/zenodo.1453301,10.5281/zenodo.1453301,1,dataset,,10,,,,,,,,5,41,10,5,41,44,13428889600,44,13428889600 10.5281/zenodo.1453418,10.5281/zenodo.1345741,1,dataset,,2990,,,,,,,,15,77,2994,18,97,111,59982486899,86,38582903419 10.5281/zenodo.1453836,10.5281/zenodo.1453835,1,dataset,,34,,,,,,,,22,40,34,22,40,47,6214370,47,6214370 10.5281/zenodo.1454052,10.5281/zenodo.1454051,1,publication,,181,,,,,,,,39,55,181,39,55,68,329709179,68,329709179 10.5281/zenodo.14565,,1,dataset,https://github.com/mirador/ebola,22,1,"{""Python"": 31156}",,1,3,[],1,21,218,22,21,218,249,11840306,249,11840306 10.5281/zenodo.14578,,1,publication,,24,,,,,,,,23,30,24,23,30,32,98715240,32,98715240 10.5281/zenodo.14580,,1,publication,,16,,,,,,,,15,49,16,15,49,52,13352240,52,13352240 10.5281/zenodo.1458961,10.5281/zenodo.1458960,1,software,https://github.com/yt-project/yt_astro_analysis,11,7,"{""Python"": 343251, ""C"": 133148, ""Objective-C"": 300, ""Shell"": 37}",Other,8,6,"[python, analysis, astrophysics, scientific-computing, scientific-visualization, astronomy, data-visualization]",8,7,42,11,7,42,65,13246134,65,13246134 10.5281/zenodo.14594,,1,dataset,,4,,,,,,,,3,12,4,3,12,12,14879,12,14879 10.5281/zenodo.14595,,1,dataset,,4,,,,,,,,3,30,4,3,30,31,25805,31,25805 10.5281/zenodo.1459679,10.5281/zenodo.1459678,1,software,https://github.com/arbor-sim/arbor,4,20,"{""C++"": 3808659, ""Cuda"": 78744, ""Python"": 69914, ""CMake"": 60174, ""Julia"": 16396, ""AMPL"": 13568, ""Perl"": 11581, ""Shell"": 4771}",Other,32,19,"[neuroscience, hpc, cuda, gpu, tbb, mpi, modern-cpp]",32,3,60,7,4,183,264,8347915,82,4646788 10.5281/zenodo.1459786,10.5281/zenodo.654861,1,software,https://github.com/brian-team/brian2,4,101,"{""Python"": 2661135, ""RPC"": 225908, ""C++"": 126231, ""Jupyter Notebook"": 74520, ""C"": 16033, ""Batchfile"": 3366, ""Shell"": 1885, ""Makefile"": 685}",Other,305,39,"[python, neuroscience, science, differential-equations, spiking-neural-networks, biological-simulations, code-generation, simulation-framework, brian]",305,3,21,28,9,80,114,44560935,21,6663508 10.5281/zenodo.1460344,10.5281/zenodo.1460343,1,software,https://github.com/georgmuntingh/ImplicitClustering,4,1,"{""Jupyter Notebook"": 377312}",GNU General Public License v3.0,2,2,[],2,2,8,4,2,8,11,4356736,11,4356736 10.5281/zenodo.1460346,10.5281/zenodo.1460345,1,software,,7,,,,,,,,3,110,7,3,110,123,100098,123,100098 10.5281/zenodo.14609,,1,software,,0,,,,,,,,0,10,0,0,10,10,0,10,0 10.5281/zenodo.1461607,10.5281/zenodo.1322676,1,software,,14,,,,,,,,6,40,59,30,139,207,3486916,61,809274 10.5281/zenodo.1463014,10.5281/zenodo.1463013,1,software,https://github.com/Medina-Mardones/Steenrod-cup_i-coproducts,4,0,"{""Python"": 1873}",,0,0,[],0,2,3,4,2,3,6,6480,6,6480 10.5281/zenodo.1463020,10.5281/zenodo.1463019,1,software,,4,,,,,,,,3,5,4,3,5,5,150600,5,150600 10.5281/zenodo.1463095,10.5281/zenodo.1463094,1,software,https://github.com/NihanPol/2018-DNS-merger-rate,5,0,"{""Jupyter Notebook"": 834158, ""Python"": 125638, ""Shell"": 42}",,0,0,[],0,3,9,5,3,9,11,3249575,11,3249575 10.5281/zenodo.1463099,10.5281/zenodo.1463098,1,software,https://github.com/NihanPol/SNR_degradation_factor_for_BNS_systems,5,0,"{""Fortran"": 84683}",,0,0,[],0,3,9,5,3,9,14,122915,14,122915 10.5281/zenodo.1463587,10.5281/zenodo.1463586,1,software,https://github.com/ronniyjoseph/SCAR,4,0,"{""Python"": 222177}",MIT License,0,0,"[calibration, redundant-calibration, redundancy, radio-astronomy, 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10.5281/zenodo.1464285,10.5281/zenodo.1464284,1,software,https://github.com/gauravsk/ranacapa,9,1,"{""R"": 55545}",GNU General Public License v3.0,7,5,[],7,5,65,9,5,65,70,886473,70,886473 10.5281/zenodo.1465055,10.5281/zenodo.1465054,1,publication,,22,,,,,,,,20,62,22,20,62,67,382294,67,382294 10.5281/zenodo.1465616,10.5281/zenodo.1465615,1,software,https://github.com/TerrestrialEcology-ugent/simsem,5,1,"{""R"": 24245}",,0,1,[],0,4,9,10,6,9,12,82500,11,36915 10.5281/zenodo.1465920,10.5281/zenodo.1465919,1,software,https://github.com/dwaithe/peroxisome_scripts,2,0,"{""Jupyter Notebook"": 5101888, ""Python"": 39327}",,1,1,[],1,1,12,2,1,12,12,7531542,12,7531542 10.5281/zenodo.14666,,1,dataset,,3,,,,,,,,2,4,3,2,4,4,118992,4,118992 10.5281/zenodo.1466831,10.5281/zenodo.1466830,1,software,https://github.com/CWTSLeiden/networkanalysis,9,7,"{""Java"": 161524, ""Shell"": 1036}",MIT License,38,5,"[network-analysis, clustering-algorithm, community-detection]",38,7,61,9,7,61,71,1262241,71,1262241 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10.5281/zenodo.1495558,10.5281/zenodo.1495557,1,dataset,,2,,,,,,,,2,34,2,2,34,46,117899882,46,117899882 10.5281/zenodo.14985,,1,software,,62,,,,,,,,60,841,62,60,841,860,8610746,860,8610746 10.5281/zenodo.151618,,1,publication,,11,,,,,,,,10,18,11,10,18,19,6467450,19,6467450 10.5281/zenodo.153816,,1,software,https://github.com/matthewgthomas/saami-pggs,1,0,"{""R"": 16269}",GNU General Public License v3.0,0,1,[],0,1,15,1,1,15,15,38549,15,38549 10.5281/zenodo.153819,,1,dataset,,4,,,,,,,,4,29,4,4,29,29,42484064,29,42484064 10.5281/zenodo.153821,,1,publication,,0,,,,,,,,0,9,0,0,9,10,0,10,0 10.5281/zenodo.153825,10.5281/zenodo.594448,1,software,https://github.com/dslfaithdev/SocialCrawler,2,11,"{""PHP"": 75377, ""JavaScript"": 40914, ""PLpgSQL"": 6441, ""Shell"": 5102, ""CSS"": 3929, ""Python"": 421}",Apache License 2.0,12,7,[],12,2,43,2,2,52,57,1001466,43,1001466 10.5281/zenodo.153883,,1,software,https://github.com/4ment/aiv-migratory-flyways,2,0,"{""Python"": 20068}",,0,1,"[data, influenza]",0,2,24,2,2,24,24,7862652,24,7862652 10.5281/zenodo.154058,,1,software,https://github.com/usc-mrel/DCE_direct_recon,1,0,"{""MATLAB"": 118293, ""C"": 9247, ""M"": 109}",MIT License,2,6,[],2,1,40,1,1,40,42,119105,42,119105 10.5281/zenodo.154083,,1,dataset,,7,,,,,,,,7,77,7,7,77,77,1063314616,77,1063314616 10.5281/zenodo.154097,10.5281/zenodo.596588,1,software,https://github.com/jdidion/atropos,0,10,"{""Python"": 757302, ""TeX"": 110362, ""Nextflow"": 55914, ""Dockerfile"": 28104, ""Common Workflow Language"": 17034, ""Shell"": 12656, ""R"": 5250, ""Makefile"": 1761}",Other,84,7,"[python3, bioinformatics, ngs, trimming]",84,0,13,0,0,32,33,0,13,0 10.5281/zenodo.15416,,1,software,https://github.com/ProQuestionAsker/ReefNetDiveMove,0,0,{},MIT License,1,3,[],1,0,15,0,0,15,18,0,18,0 10.5281/zenodo.154185,10.5281/zenodo.592056,1,software,https://github.com/ga4gh/dockstore,35,18,"{""Java"": 2894464, ""Common Workflow Language"": 231417, ""Nextflow"": 98752, ""wdl"": 42310, ""Shell"": 17681, ""Scala"": 13914, ""HTML"": 12024, ""TSQL"": 4457, ""Dockerfile"": 57}",Apache License 2.0,64,28,"[dockstore, docker, cwl, wdl, containers, bioinformatics, nextflow, workflow]",64,24,64,2890,113,523,684,2353856092,67,17164385 10.5281/zenodo.154273,10.5281/zenodo.595966,1,software,https://github.com/thomasmosier/CCHF,0,0,"{""MATLAB"": 1132041, ""Fortran"": 114468, ""Rich Text Format"": 727}",,1,3,[],1,0,3,0,0,4,4,0,3,0 10.5281/zenodo.1542942,10.5281/zenodo.1542941,1,software,,0,,,,,,,,0,7,0,0,7,12,0,12,0 10.5281/zenodo.154376,10.5281/zenodo.596162,1,software,https://github.com/bonej-org/bonej,4,3,"{""Java"": 1152135}",,5,1,[],5,3,14,15,5,44,53,4924305,14,1344516 10.5281/zenodo.154382,,1,dataset,,3,,,,,,,,3,104,3,3,104,107,2160449166,107,2160449166 10.5281/zenodo.154406,,1,dataset,,1,,,,,,,,1,43,1,1,43,44,306860921,44,306860921 10.5281/zenodo.154432,10.5281/zenodo.592600,1,software,https://github.com/thierrygosselin/stackr,2,4,"{""R"": 313174}",,14,9,"[radseq, rad, genotype-likelihoods, filter, genetics, genomics, genomic-data-analysis, genomics-visualization, radseq-data, gbs, genotyping-by-sequencing, stackr]",14,2,42,17,16,269,289,35052518,45,4928004 10.5281/zenodo.154446,,1,dataset,,2,,,,,,,,1,20,2,1,20,20,51055,20,51055 10.5281/zenodo.154493,,1,software,,3,,,,,,,,3,18,3,3,18,18,40524,18,40524 10.5281/zenodo.154544,,1,publication,,7,,,,,,,,6,29,7,6,29,31,4889059,31,4889059 10.5281/zenodo.154628,,1,software,https://github.com/shiyuanhe/varStar,1,3,"{""HTML"": 2018925, ""C++"": 44977, ""R"": 6506}",GNU Affero General Public License v3.0,2,2,[],2,1,14,1,1,14,14,33780514,14,33780514 10.5281/zenodo.154655,,1,software,https://github.com/GabrielaCR/AGNfitter,2,9,"{""Python"": 175171, ""Shell"": 892}",MIT License,23,12,[],23,1,15,2,1,15,15,14379366,15,14379366 10.5281/zenodo.154673,,1,publication,,20,,,,,,,,18,32,20,18,32,32,49269420,32,49269420 10.5281/zenodo.154700,,1,software,https://github.com/ManuelMBaumann/elastic_benchmarks,0,0,"{""Python"": 16302, ""MATLAB"": 7385, ""Shell"": 276}",MIT License,2,1,"[reproducible-science, reproducibility, computational-geophysics]",2,0,8,0,0,8,8,0,8,0 10.5281/zenodo.154723,,1,software,https://github.com/maurorossi/LAND-SE,8,3,"{""R"": 2837784}",GNU General Public License v3.0,4,4,[],4,8,19,8,8,19,19,104843824,19,104843824 10.5281/zenodo.15487,,1,publication,,1,,,,,,,,1,46,1,1,46,51,1380,51,1380 10.5281/zenodo.15514,,1,publication,,0,,,,,,,,0,43,0,0,43,43,0,43,0 10.5281/zenodo.155144,10.5281/zenodo.595868,1,software,https://github.com/stuartmead/laharthesis-sources,0,0,"{""R"": 61458}",,0,1,[],0,0,9,0,0,9,9,0,9,0 10.5281/zenodo.155326,,1,software,https://github.com/sebawild/jumplists,1,0,"{""Java"": 47058}",MIT License,0,1,[],0,1,1,1,1,1,1,13049,1,13049 10.5281/zenodo.15548,,1,dataset,,21,,,,,,,,12,55,21,12,55,60,1898992102,60,1898992102 10.5281/zenodo.15549,,1,dataset,,15,,,,,,,,8,56,15,8,56,57,1920495442,57,1920495442 10.5281/zenodo.15550,,1,dataset,,5,,,,,,,,4,33,5,4,33,34,2301767,34,2301767 10.5281/zenodo.15665,,1,software,https://github.com/bstamps/UPARSE_Workflow,2,2,"{""Shell"": 7023}",GNU General Public License v3.0,3,2,[],3,2,19,2,2,19,19,31756,19,31756 10.5281/zenodo.15693,,1,software,https://github.com/mgharvey/misc_python,1,4,"{""Python"": 118259}",Other,8,2,[],8,1,28,1,1,28,29,54891,29,54891 10.5281/zenodo.15704,,1,software,https://github.com/csdms-contrib/slepian_alpha,13,18,"{""MATLAB"": 801582, ""M"": 9039}",Other,10,9,[],10,12,142,13,12,142,142,5296668,142,5296668 10.5281/zenodo.1571012,10.5281/zenodo.1571011,1,dataset,,173,,,,,,,,7,66,173,7,66,92,16358832901,92,16358832901 10.5281/zenodo.157363,10.5281/zenodo.597702,1,software,https://github.com/hpparvi/PyTransit,0,10,"{""Jupyter Notebook"": 3232778, ""Python"": 247659, ""C"": 13388}",GNU General Public License v2.0,41,5,"[transiting-exoplanets, python, light-curve-models, transit-model, astrophysics, astronomy, exoplanets]",41,0,19,0,0,21,21,0,19,0 10.5281/zenodo.15770,10.5281/zenodo.592194,1,software,https://github.com/chrisdembia/yeadon,0,8,"{""Python"": 257597, ""Batchfile"": 51, ""Shell"": 38}",Other,16,5,[],16,0,14,2,2,47,52,2260380,14,0 10.5281/zenodo.157809,,1,publication,,0,,,,,,,,0,30,0,0,30,33,0,33,0 10.5281/zenodo.15781,10.5281/zenodo.592416,1,software,https://github.com/bgruening/docker-galaxy-blast,0,2,{},MIT License,5,1,[],5,0,10,0,0,18,19,0,10,0 10.5281/zenodo.15790,,1,dataset,,0,,,,,,,,0,25,0,0,25,25,0,25,0 10.5281/zenodo.15791,,1,publication,,8,,,,,,,,8,14,8,8,14,14,4846000,14,4846000 10.5281/zenodo.15794,,1,software,https://github.com/pdebuyl/cg_md_polymerization,4,2,"{""Python"": 37094, ""Makefile"": 3236, ""Shell"": 1454}",Other,1,2,[],1,4,29,4,4,29,29,96720,29,96720 10.5281/zenodo.15855,10.5281/zenodo.593232,1,software,https://github.com/cernotik/GaussSME,1,0,{},GNU General Public License v2.0,0,1,[],0,1,47,1,1,71,82,158706,57,158706 10.5281/zenodo.15856,,1,publication,,6,,,,,,,,6,110,6,6,110,116,7301442,116,7301442 10.5281/zenodo.158908,,1,software,,10,,,,,,,,10,246,10,10,246,277,84609380,277,84609380 10.5281/zenodo.158940,,1,video,,0,,,,,,,,0,1,0,0,1,1,0,1,0 10.5281/zenodo.158958,,1,dataset,,186,,,,,,,,103,537,186,103,537,564,7583100184,564,7583100184 10.5281/zenodo.158974,10.5281/zenodo.596042,1,software,https://github.com/akselsv/object_detection_using_cga,3,1,"{""C++"": 181823, ""CMake"": 3806}",,1,1,[],1,3,49,4,4,50,53,260202156,52,195151938 10.5281/zenodo.159033,10.5281/zenodo.595764,1,software,https://github.com/sedie/bayside,5,0,"{""R"": 46935, ""Stan"": 2378}",,3,2,[],3,5,47,5,5,55,55,39510855,47,39510855 10.5281/zenodo.159091,10.5281/zenodo.595546,1,software,https://github.com/SebastianBocquet/pygtc,0,4,"{""Jupyter Notebook"": 734778, ""Python"": 63185, ""TeX"": 4259, ""Shell"": 290}",MIT License,9,2,"[mcmc, bayesian-data-analysis, data-visualization]",9,0,10,10,1,30,32,71114242,10,0 10.5281/zenodo.159170,,1,software,https://github.com/williamdlees/AmberUtils,1,5,"{""Python"": 93285, ""Batchfile"": 635}",MIT License,2,2,[],2,1,14,1,1,14,14,5192773,14,5192773 10.5281/zenodo.159251,,1,dataset,,13,,,,,,,,2,22,13,2,22,22,305570839,22,305570839 10.5281/zenodo.159272,,1,dataset,,31,,,,,,,,16,113,31,16,113,119,22977834567,119,22977834567 10.5281/zenodo.159282,,1,dataset,,31,,,,,,,,15,157,31,15,157,163,1226378763,163,1226378763 10.5281/zenodo.159453,,1,dataset,,1,,,,,,,,1,13,1,1,13,13,70792571,13,70792571 10.5281/zenodo.159472,10.5281/zenodo.654872,1,dataset,,39,,,,,,,,19,165,39,19,165,174,1350857724,174,1350857724 10.5281/zenodo.159474,,1,dataset,,1,,,,,,,,1,20,1,1,20,21,173736568,21,173736568 10.5281/zenodo.159557,10.5281/zenodo.595563,1,software,https://github.com/PirminLakner/Phasor_FLIM,16,0,"{""AGS Script"": 70467526, ""MATLAB"": 11529}",MIT License,1,1,[],1,16,109,19,19,119,122,503969053,111,424394992 10.5281/zenodo.159604,10.5281/zenodo.594283,1,software,https://github.com/ViDA-NYU/reprozip,4,27,"{""Python"": 602317, ""C"": 104737, ""Shell"": 5738, ""JavaScript"": 4647, ""Inno Setup"": 2423, ""C++"": 583, ""Batchfile"": 198}","BSD 3-Clause ""New"" or ""Revised"" License",186,18,"[reprozip, computational-science, reprounzip, python, reproducibility, linux, science, scientific-computing, archiving, reproducible-research, reproducible-science, ptrace, docker, vagrant, nyu, nyucds]",186,2,16,57,6,76,94,63098959,17,2796228 10.5281/zenodo.15961,,1,dataset,,5,,,,,,,,4,26,5,4,26,29,168490,29,168490 10.5281/zenodo.159623,,1,software,https://github.com/LiNk-NY/H-HybridCE,0,1,"{""PostScript"": 18466, ""R"": 17358}",MIT License,1,2,[],1,0,1,0,0,1,1,0,1,0 10.5281/zenodo.159637,10.5281/zenodo.654587,1,software,,0,,,,,,,,0,13,1,1,26,34,336791,14,0 10.5281/zenodo.159716,,1,software,https://github.com/elihuihms/itcsimlib,0,0,"{""Python"": 197706, ""C"": 10747}",GNU General Public License v2.0,0,2,[],0,0,12,0,0,12,13,0,13,0 10.5281/zenodo.159725,,1,software,https://github.com/ctheissen/LoKi,0,1,"{""Python"": 53388}",MIT License,0,2,[],0,0,14,0,0,14,16,0,16,0 10.5281/zenodo.159784,,1,dataset,,5,,,,,,,,4,29,5,4,29,32,1859709,32,1859709 10.5281/zenodo.15987,,1,dataset,,1,,,,,,,,1,23,1,1,23,23,20697,23,20697 10.5281/zenodo.15988,,1,dataset,,13,,,,,,,,10,48,13,10,48,52,1908062,52,1908062 10.5281/zenodo.15990,,1,software,https://github.com/eblur/ghost_halos,0,0,{},"BSD 3-Clause ""New"" or ""Revised"" License",0,1,[],0,0,8,0,0,8,8,0,8,0 10.5281/zenodo.159923,,1,dataset,,4,,,,,,,,3,24,4,3,24,28,14315200,28,14315200 10.5281/zenodo.16001,,1,publication,,48,,,,,,,,45,510,48,45,510,514,17065440,514,17065440 10.5281/zenodo.160114,,1,software,https://github.com/pip010/scirun4plus,6,1,"{""C++"": 137380382, ""C"": 128609879, ""HTML"": 10126294, ""Tcl"": 6296683, ""Roff"": 3966876, ""Objective-C"": 2047588, ""Fortran"": 1738130, ""CMake"": 1695904, ""Python"": 1353911, ""Assembly"": 1316216, ""Makefile"": 1245416, ""Shell"": 1143218, ""M4"": 677644, ""TeX"": 327116, ""BlitzBasic"": 193255, ""Ada"": 178134, ""XSLT"": 153428, ""MATLAB"": 137737, ""Pascal"": 122328, ""C#"": 111452, ""DIGITAL Command Language"": 79869, ""Terra"": 78756, ""R"": 67778, ""OpenEdge ABL"": 65912, ""Perl"": 64744, ""Yacc"": 28961, ""JavaScript"": 28938, ""PHP"": 19085, ""Java"": 17639, ""WebAssembly"": 17087, ""SAS"": 16513, ""Module Management System"": 15799, ""Prolog"": 15416, ""CLIPS"": 13866, ""Awk"": 9790, ""Batchfile"": 8968, ""DTrace"": 7360, ""Smalltalk"": 6003, ""Lex"": 4854, ""VCL"": 4153, ""Perl 6"": 1716, ""CSS"": 820, ""Verilog"": 730, ""Objective-C++"": 706, ""Mercury"": 347, ""sed"": 236}",,1,1,[],1,6,28,6,6,28,28,832544382,28,832544382 10.5281/zenodo.160186,,1,software,https://github.com/shamoni/cen-evo-devo,7,0,"{""Python"": 19946, ""R"": 18775, ""Shell"": 659}",,0,1,[],0,7,62,7,7,62,71,149971892,71,149971892 10.5281/zenodo.16020,10.5281/zenodo.593331,1,software,https://github.com/antarctica/oceancolor_downloader,2,0,"{""Python"": 307971}",MIT License,7,6,[],7,2,35,5,5,90,92,3034934,35,1172774 10.5281/zenodo.160246,10.5281/zenodo.591669,1,software,https://github.com/astropy/astroquery,2,189,"{""Python"": 2192465, ""HTML"": 977519, ""Shell"": 8576}","BSD 3-Clause ""New"" or ""Revised"" License",230,32,"[astropy, python, astropy-affiliated, astronomy]",230,2,9,37,8,638,748,106780000,9,5175794 10.5281/zenodo.160261,,1,dataset,,10,,,,,,,,9,69,10,9,69,75,24921142140,75,24921142140 10.5281/zenodo.160263,,1,software,,0,,,,,,,,0,17,0,0,17,17,0,17,0 10.5281/zenodo.160327,,1,software,https://github.com/DiCarloLab-Delft/PycQED_py3,4,10,"{""Python"": 5503592, ""PowerShell"": 617, ""Shell"": 117}",MIT License,25,28,[],25,4,77,4,4,77,89,68455884,89,68455884 10.5281/zenodo.160328,,1,publication,,10,,,,,,,,9,25,10,9,25,26,22721060,26,22721060 10.5281/zenodo.160333,,1,software,https://github.com/fabianrost84/Rost-Rodrigo-Albors-et-al-2016,1,1,"{""Jupyter Notebook"": 6634738, ""Python"": 14424}",Other,0,1,"[python, jupyter-notebook, pymc]",0,1,93,1,1,93,95,45178772,95,45178772 10.5281/zenodo.16039,,1,software,https://github.com/JuanLSL/DueTimer,7,,,,,,,,6,104,7,6,104,106,74851,106,74851 10.5281/zenodo.160399,10.5281/zenodo.594372,1,software,https://github.com/earlbellinger/asteroseismology,0,0,{},GNU General Public License v2.0,10,3,[],10,0,20,0,0,65,73,0,28,0 10.5281/zenodo.160402,10.5281/zenodo.596314,1,software,https://github.com/gcowan/RapidSim,5,11,"{""C++"": 164801, ""C"": 8246, ""Python"": 3893, ""CMake"": 3652, ""Shell"": 1159, ""Dockerfile"": 1009}",MIT License,10,7,[],10,3,62,19,7,134,145,19730070,63,7342805 10.5281/zenodo.160466,10.5281/zenodo.596109,1,software,https://github.com/frjalex/memman,0,,,,,,,,0,0,0,0,1,1,0,0,0 10.5281/zenodo.160539,,1,dataset,,0,,,,,,,,0,29,0,0,29,30,0,30,0 10.5281/zenodo.160551,,1,software,https://github.com/NCBI-Hackathons/TCGA_dbGaP,42,4,"{""Python"": 24268, ""Shell"": 316}",Creative Commons Zero v1.0 Universal,6,11,[],6,39,194,42,39,194,210,2155076238,210,2155076238 10.5281/zenodo.160573,,1,software,,6,,,,,,,,6,133,6,6,133,140,17954046,140,17954046 10.5281/zenodo.16064,,1,dataset,,25,,,,,,,,25,249,25,25,249,259,64544825,259,64544825 10.5281/zenodo.160703,,1,software,,1,,,,,,,,1,20,1,1,20,20,3959344,20,3959344 10.5281/zenodo.160707,,1,publication,,11,,,,,,,,9,22,11,9,22,22,22063096,22,22063096 10.5281/zenodo.160708,,1,dataset,,,,,,,,,,,,,,,,,, 10.5281/zenodo.160716,10.5281/zenodo.595006,1,software,https://github.com/FedericoV/eLife_Editorial_Process,0,0,"{""Jupyter Notebook"": 556005, ""Python"": 1900}","BSD 2-Clause ""Simplified"" License",2,1,[],2,0,7,1,1,32,36,246809,7,0 10.5281/zenodo.160737,,1,publication,,4,,,,,,,,3,19,4,3,19,22,14227452,22,14227452 10.5281/zenodo.160787,,1,software,https://github.com/petercombs/EisenLab-Code,0,1,"{""Python"": 130134, ""Makefile"": 7903, ""Shell"": 322}",Other,1,2,[],1,0,34,0,0,34,36,0,36,0 10.5281/zenodo.160797,,1,software,https://github.com/petercombs/python-emd,0,0,"{""C"": 25710, ""Python"": 446}",,0,1,[],0,0,22,0,0,22,24,0,24,0 10.5281/zenodo.16083,,1,software,https://github.com/dww100/sct,1,2,"{""Python"": 275362, ""Fortran"": 194860, ""Shell"": 7642, ""TeX"": 6791, ""CMake"": 2111, ""DIGITAL Command Language"": 2040}",Apache License 2.0,3,3,[],3,1,14,1,1,14,15,1470268,15,1470268 10.5281/zenodo.160870,10.5281/zenodo.596279,1,software,https://github.com/Conceptual-Inertia/Conceptum,0,1,"{""C"": 61702, ""C++"": 520, ""CMake"": 237}",GNU General Public License v3.0,11,2,"[vm, language, bytecode]",11,0,1,0,0,2,2,0,1,0 10.5281/zenodo.16097,10.5281/zenodo.592346,1,software,https://github.com/ALaDyn/piccante,4,23,"{""C++"": 717631, ""CMake"": 30767, ""Shell"": 20004, ""C"": 11004, ""Makefile"": 6113, ""PowerShell"": 466}",GNU General Public License v3.0,35,15,[],35,4,151,20,18,355,399,35272230,156,6947528 10.5281/zenodo.160989,,1,software,https://github.com/dannygoldstein/simple,0,0,"{""Python"": 35755}",,0,1,[],0,0,6,0,0,6,6,0,6,0 10.5281/zenodo.161001,,1,publication,,6,,,,,,,,6,12,6,6,12,12,29971386,12,29971386 10.5281/zenodo.161321,,1,dataset,,9,,,,,,,,9,46,9,9,46,47,3909578823,47,3909578823 10.5281/zenodo.161326,,1,software,https://github.com/guruvenkat7/paper-supplement-2016-ABL,5,0,"{""Python"": 10908}",Other,0,1,[],0,5,27,5,5,27,29,382237175,29,382237175 10.5281/zenodo.16133,,1,publication,,21,,,,,,,,21,12,21,21,12,12,5031936,12,5031936 10.5281/zenodo.161333,,1,dataset,,40,,,,,,,,35,145,40,35,145,150,123269920,150,123269920 10.5281/zenodo.16136,,1,publication,,4,,,,,,,,4,8,4,4,8,8,1146880,8,1146880 10.5281/zenodo.161479,,1,dataset,,41,,,,,,,,17,105,41,17,105,110,7046421239,110,7046421239 10.5281/zenodo.161507,10.5281/zenodo.594396,1,software,https://github.com/firedrakeproject/tsfc,9,10,"{""Python"": 352586}",Other,7,28,[],7,6,1,204,28,50,58,18267744,1,556335 10.5281/zenodo.161526,,1,publication,,2,,,,,,,,2,99,2,2,99,101,29529288,101,29529288 10.5281/zenodo.161602,10.5281/zenodo.598098,1,software,https://github.com/PhDP/Articles,4,,,,,,,,4,25,4,4,29,30,30391184,25,30391184 10.5281/zenodo.161719,,1,dataset,,34,,,,,,,,25,55,34,25,55,60,8941347,60,8941347 10.5281/zenodo.16188,10.5281/zenodo.593128,1,software,https://github.com/FESTUNG/project,4,5,"{""MATLAB"": 1106311, ""CSS"": 25871, ""TeX"": 3924, ""HTML"": 2935, ""GLSL"": 475}",Other,18,8,"[matlab-toolbox, discontinuous-galerkin, unstructured-grids, gnu-octave, vectorization, mathematics, partial-differential-equations, numerics]",18,4,47,7,7,69,72,1210069,47,209428 10.5281/zenodo.16194,,1,publication,,27,,,,,,,,27,10,27,27,10,10,102994686,10,102994686 10.5281/zenodo.16195,,1,dataset,,4,,,,,,,,2,17,4,2,17,19,76492,19,76492 10.5281/zenodo.161996,,1,publication,,6,,,,,,,,6,26,6,6,26,27,1586958,27,1586958 10.5281/zenodo.162045,10.5281/zenodo.596435,1,software,https://github.com/dmbates/MixedModels.jl,6,31,"{""Julia"": 120696}",Other,149,21,"[julia, statistical-models, mixed-models, mixed-effects]",149,3,3,171,18,183,223,1173149687,3,4078608 10.5281/zenodo.162063,10.5281/zenodo.596424,1,software,https://github.com/tpq/exprso,0,5,"{""R"": 211569}",,11,3,[],11,0,18,2,1,33,34,1085356,19,0 10.5281/zenodo.162241,,1,publication,,392,,,,,,,,347,1912,392,347,1912,2031,208152392,2031,208152392 10.5281/zenodo.162407,10.5281/zenodo.656565,1,software,,0,,,,,,,,0,5,0,0,5,6,0,6,0 10.5281/zenodo.16241,10.5281/zenodo.591714,1,dataset,https://github.com/BridgesLab/DrosophilaMuscleFunction,0,1,"{""HTML"": 11684597, ""TeX"": 18071}",Other,0,4,[],0,0,10,0,0,22,24,0,10,0 10.5281/zenodo.16272,,1,dataset,,1,,,,,,,,1,21,1,1,21,21,13995,21,13995 10.5281/zenodo.16287,,1,dataset,,0,,,,,,,,0,13,0,0,13,13,0,13,0 10.5281/zenodo.16289,,1,dataset,,8,,,,,,,,2,12,8,2,12,14,1196733113,14,1196733113 10.5281/zenodo.16290,,1,software,https://github.com/sojamo/controlp5,37,89,"{""Java"": 719071, ""CSS"": 15955, ""HTML"": 12830, ""Shell"": 1227}",GNU Lesser General Public License v2.1,274,27,"[processing, gui, gui-library, controlp5, processing-library]",274,36,409,37,36,409,421,43909713,421,43909713 10.5281/zenodo.162907,,1,dataset,,278,,,,,,,,29,141,278,29,141,150,2852930660,150,2852930660 10.5281/zenodo.16291,,1,dataset,,4,,,,,,,,2,10,4,2,10,10,1059030,10,1059030 10.5281/zenodo.16292,,1,dataset,,15,,,,,,,,4,11,15,4,11,15,1887850393,15,1887850393 10.5281/zenodo.16293,,1,dataset,,11,,,,,,,,3,24,11,3,24,25,1645895170,25,1645895170 10.5281/zenodo.16294,,1,dataset,,1,,,,,,,,1,13,1,1,13,13,327936,13,327936 10.5281/zenodo.162942,10.5281/zenodo.598164,1,software,https://github.com/msmexplorer/msmexplorer,2,2,"{""Python"": 64236, ""Jupyter Notebook"": 9592, ""TeX"": 5030, ""Shell"": 1414, ""Batchfile"": 94}",MIT License,2,1,[],2,1,4,11,4,38,41,2860596,4,348266 10.5281/zenodo.16295,,1,dataset,,1,,,,,,,,1,9,1,1,9,9,268320,9,268320 10.5281/zenodo.162978,10.5281/zenodo.601266,1,dataset,,92,,,,,,,,45,1219,92,45,1219,1258,172021985,1258,172021985 10.5281/zenodo.162982,10.5281/zenodo.596624,1,software,,0,,,,,,,,0,6,0,0,7,7,0,6,0 10.5281/zenodo.163003,10.5281/zenodo.596607,1,software,https://github.com/poissonconsulting/lexr,0,0,"{""R"": 119011, ""Rebol"": 349}",Other,1,2,[],1,0,8,0,0,9,9,0,8,0 10.5281/zenodo.16304,10.5281/zenodo.592696,1,software,https://github.com/timothydmorton/isochrones,1,35,"{""Jupyter Notebook"": 24193600, ""Python"": 293522, ""Shell"": 840}",MIT License,61,13,[],61,1,28,11,5,95,108,120658750,28,1950520 10.5281/zenodo.163106,10.5281/zenodo.596645,1,software,https://github.com/ox-it/hepitopes,1,0,"{""R"": 4908}",MIT License,1,2,[],1,1,41,3,2,48,49,84679,42,27693 10.5281/zenodo.163113,10.5281/zenodo.596621,1,software,https://github.com/mirams/PyHillFit,0,0,"{""Python"": 127127, ""C++"": 22389, ""MATLAB"": 13290}","BSD 3-Clause ""New"" or ""Revised"" License",5,4,[],5,0,43,6,6,145,151,64487009,44,0 10.5281/zenodo.163145,,1,software,https://github.com/drsmwhite/Mechanistic_Midge_Model,2,0,"{""MATLAB"": 16763}",MIT License,0,0,[],0,2,6,2,2,6,6,28684,6,28684 10.5281/zenodo.163342,,1,publication,,10,,,,,,,,3,37,10,3,37,39,33122607,39,33122607 10.5281/zenodo.16336,,1,dataset,https://github.com/Monsauce/Mussel-garden-fertilization-data,0,0,{},,0,1,[],0,0,19,0,0,19,19,0,19,0 10.5281/zenodo.163398,,1,publication,,77,,,,,,,,72,202,77,72,202,213,20309982,213,20309982 10.5281/zenodo.163404,10.5281/zenodo.596651,1,software,https://github.com/PascalKieslich/mousetrap-os,0,6,"{""Python"": 52633, ""PostScript"": 36056}",GNU General Public License v3.0,14,2,"[opensesame, mouse-tracking, experiment, python]",14,0,18,0,0,37,38,0,19,0 10.5281/zenodo.16341,,1,publication,,7,,,,,,,,7,5,7,7,5,5,4364843,5,4364843 10.5281/zenodo.163441,,1,publication,,6,,,,,,,,5,26,6,5,26,28,30441750,28,30441750 10.5281/zenodo.16345,10.5281/zenodo.592215,1,software,https://github.com/DiamondLightSource/Savu,6,33,"{""Python"": 1815024, ""Shell"": 184934, ""C"": 106387, ""QML"": 25629, ""C++"": 22334, ""HTML"": 13495, ""Makefile"": 4418, ""Roff"": 3622, ""Dockerfile"": 1635, ""Batchfile"": 733, ""CSS"": 604}",Other,17,13,[],17,3,10,70,5,80,89,6316161861,13,151585938 10.5281/zenodo.163494,,1,software,,2,,,,,,,,2,9,2,2,9,10,130574304,10,130574304 10.5281/zenodo.163505,,1,dataset,,0,,,,,,,,0,16,0,0,16,17,0,17,0 10.5281/zenodo.163506,,1,dataset,,4,,,,,,,,4,85,4,4,85,85,524924,85,524924 10.5281/zenodo.163522,,1,software,https://github.com/ebmdatalab/trialstracker,0,4,"{""Jupyter Notebook"": 55807, ""JavaScript"": 12914, ""HTML"": 9614, ""Python"": 8095, ""CSS"": 3612}",MIT License,22,15,[],22,0,74,0,0,74,81,0,81,0 10.5281/zenodo.163540,,1,dataset,,1,,,,,,,,1,11,1,1,11,11,10286,11,10286 10.5281/zenodo.163541,,1,dataset,,2,,,,,,,,2,28,2,2,28,28,21062,28,21062 10.5281/zenodo.163638,,1,software,https://github.com/Przemol/seqplots,6,15,"{""JavaScript"": 561754, ""HTML"": 295538, ""R"": 228067, ""CSS"": 32920}",,62,5,[],62,6,86,6,6,86,88,34284966,88,34284966 10.5281/zenodo.163641,10.5281/zenodo.596630,1,software,https://github.com/Przemol/seqplots_electron,13,2,"{""C++"": 138250839, ""HTML"": 58599652, ""R"": 11520501, ""C"": 4049206, ""JavaScript"": 3207709, ""Tcl"": 2556717, ""AngelScript"": 2158772, ""CSS"": 924467, ""Roff"": 885787, ""TeX"": 853915, ""Shell"": 803484, ""Makefile"": 87987, ""Assembly"": 79338, ""NSIS"": 62106, ""Lua"": 10443, ""XSLT"": 7644, ""Rebol"": 5200, ""Perl"": 3246, ""TypeScript"": 1650, ""MATLAB"": 759, ""Batchfile"": 674, ""Scheme"": 210}",,1,1,[],1,13,96,17,16,117,155,12285199469,111,9367404943 10.5281/zenodo.163647,,1,software,,2,,,,,,,,2,73,2,2,73,74,31510442,74,31510442 10.5281/zenodo.163648,10.5281/zenodo.596655,1,software,https://github.com/poissonconsulting/klexr,0,0,"{""R"": 35900}",Other,0,1,[deprecated],0,0,6,0,0,22,22,0,6,0 10.5281/zenodo.163650,,1,software,https://github.com/chnchg/cst,0,0,"{""C++"": 312703, ""Makefile"": 980, ""M4"": 688, ""Shell"": 82}",GNU Lesser General Public License v3.0,1,1,[],1,0,5,0,0,5,5,0,5,0 10.5281/zenodo.163683,,1,software,https://github.com/calacademy-research/ScaffSplitN50s,0,0,"{""Shell"": 7451, ""Python"": 6362}",MIT License,0,1,[],0,0,3,0,0,3,3,0,3,0 10.5281/zenodo.163722,,1,software,https://github.com/calacademy-research/dupchk,0,0,"{""Go"": 11823}",MIT License,0,1,[],0,0,4,0,0,4,4,0,4,0 10.5281/zenodo.163739,,1,software,https://github.com/calacademy-research/scafN50,0,0,"{""Python"": 11075, ""Shell"": 542}",MIT License,1,2,[],1,0,8,0,0,8,9,0,9,0 10.5281/zenodo.163748,,1,software,https://github.com/calacademy-research/scafSeqContigInfo,0,0,"{""Python"": 15436, ""Shell"": 979}",MIT License,0,1,[],0,0,3,0,0,3,4,0,4,0 10.5281/zenodo.16375,,1,software,https://github.com/F1000Research/kvik,0,0,"{""JavaScript"": 343246, ""CSS"": 98387, ""Go"": 83128, ""HTML"": 21154, ""Python"": 9398, ""PHP"": 2609, ""R"": 1649}",MIT License,0,1,[],0,0,17,0,0,17,18,0,18,0 10.5281/zenodo.163768,10.5281/zenodo.596686,1,software,https://github.com/BgeeDB/BgeeDB_R,1,1,"{""R"": 103915}",GNU General Public License v3.0,10,4,[],10,1,21,1,1,21,22,53497,22,53497 10.5281/zenodo.163772,,1,publication,,13,,,,,,,,12,46,13,12,46,64,8201245,64,8201245 10.5281/zenodo.163785,,1,software,https://github.com/arokem/yoon2009-schizophrenia-bulletin,0,0,"{""Jupyter Notebook"": 90534}",,1,1,[],1,0,18,0,0,18,18,0,18,0 10.5281/zenodo.163867,10.5281/zenodo.595120,1,software,https://github.com/tqdm/tqdm,12,551,"{""Python"": 196672, ""Jupyter Notebook"": 46167, ""Roff"": 6479, ""Makefile"": 4141, ""Dockerfile"": 163}",Other,10574,158,"[progressbar, progressmeter, progress-bar, meter, rate, eta, console, terminal, time, progress, bar, gui, python, parallel, cli, utilities]",10574,7,8,443,35,1088,1222,156075863,8,7496172 10.5281/zenodo.163967,,1,video,,0,,,,,,,,0,6,0,0,6,6,0,6,0 10.5281/zenodo.164192,,1,software,,6,,,,,,,,6,14,6,6,14,14,130518493,14,130518493 10.5281/zenodo.164198,,1,software,,0,,,,,,,,0,1,0,0,1,1,0,1,0 10.5281/zenodo.164201,,1,software,,0,,,,,,,,0,5,0,0,5,5,0,5,0 10.5281/zenodo.16427,,1,software,https://github.com/matsengrp/tangle,0,1,"{""Jupyter Notebook"": 589035, ""Python"": 19586, ""GAP"": 3628, ""R"": 1020, ""Shell"": 685}",,3,10,[],3,0,4,0,0,4,4,0,4,0 10.5281/zenodo.16428,,1,software,https://github.com/matsengrp/gricci,0,0,"{""Python"": 8978}",,0,10,[],0,0,16,0,0,16,16,0,16,0 10.5281/zenodo.164419,,1,dataset,,9,,,,,,,,9,38,9,9,38,38,4207491,38,4207491 10.5281/zenodo.164450,,1,software,https://github.com/chenjj2/forecaster,2,9,"{""Jupyter Notebook"": 52286, ""Python"": 8607}",MIT License,9,7,[],9,2,18,2,2,18,20,178609566,20,178609566 10.5281/zenodo.16462,10.5281/zenodo.608892,1,publication,,71,,,,,,,,69,57,71,69,57,61,15185267,61,15185267 10.5281/zenodo.164621,,1,software,,2,,,,,,,,1,28,2,1,28,29,12387344,29,12387344 10.5281/zenodo.164627,10.5281/zenodo.596689,1,software,https://github.com/darioizzo/d-CGP,1,15,"{""C++"": 221852, ""CMake"": 70864, ""Python"": 38570, ""Shell"": 3713, ""Batchfile"": 491}",GNU General Public License v3.0,40,8,[],40,1,24,6,4,62,69,6947070,24,524789 10.5281/zenodo.164628,10.5281/zenodo.596722,1,software,https://github.com/darioizzo/audi,3,9,"{""C++"": 256087, ""CMake"": 45528, ""Python"": 36322, ""Shell"": 2818, ""Batchfile"": 491}",Other,39,7,[],39,2,34,57,9,81,96,26998032,34,510327 10.5281/zenodo.164634,,1,publication,,3,,,,,,,,3,5,3,3,5,5,1036365,5,1036365 10.5281/zenodo.164683,,1,software,https://github.com/Bahler-Lab/crispr4p,2,1,"{""Python"": 27462, ""HTML"": 8854, ""CSS"": 5002, ""Makefile"": 289}",,0,2,[],0,1,21,2,1,21,21,8123400,21,8123400 10.5281/zenodo.164696,,1,dataset,,2,,,,,,,,2,30,2,2,30,32,615149128,32,615149128 10.5281/zenodo.16474,,1,dataset,,447,,,,,,,,177,581,447,177,581,625,2001151755325,625,2001151755325 10.5281/zenodo.164820,,1,dataset,,1,,,,,,,,1,32,1,1,32,32,26137575,32,26137575 10.5281/zenodo.164941,10.5281/zenodo.592129,1,software,https://github.com/gplepage/gvar,12,4,"{""Python"": 449123, ""Makefile"": 4839}",GNU General Public License v3.0,8,5,[],8,6,3,252,20,44,65,411108628,3,14465208 10.5281/zenodo.164948,,1,dataset,,4,,,,,,,,3,11,4,3,11,11,689320,11,689320 10.5281/zenodo.164953,10.5281/zenodo.660008,1,software,,67,,,,,,,,20,249,67,20,249,263,20270689,263,20270689 10.5281/zenodo.1649679,10.5281/zenodo.1649678,1,software,https://github.com/hyphaltip/fungi-gene-prediction-params,0,3,"{""AMPL"": 24275405}",,2,2,[],2,0,34,0,0,34,38,0,38,0 10.5281/zenodo.16510,,1,software,https://github.com/F1000Research/MetaGenSense,0,0,"{""Python"": 69861, ""CSS"": 58161, ""HTML"": 42677, ""JavaScript"": 2404}",,0,1,[],0,0,28,0,0,28,29,0,29,0 10.5281/zenodo.165158,,1,dataset,,3,,,,,,,,2,16,3,2,16,16,211460,16,211460 10.5281/zenodo.165162,10.5281/zenodo.596749,1,software,https://github.com/Murali-group/PathLinker-Cytoscape,2,3,"{""Java"": 230341, ""Jupyter Notebook"": 146437}",GNU General Public License v3.0,1,2,[],1,1,16,13,5,45,51,48693471,16,1343948 10.5281/zenodo.16517,,1,software,https://github.com/egonw/ambit.js,1,1,"{""JavaScript"": 14014, ""Shell"": 132}",MIT License,0,1,[],0,1,30,1,1,30,32,91250,32,91250 10.5281/zenodo.165183,,1,software,https://github.com/byuflowlab/vawt-ac,8,2,"{""Julia"": 19293}",,1,2,[],1,8,49,8,8,49,55,392904,55,392904 10.5281/zenodo.165189,,1,dataset,,3,,,,,,,,3,28,3,3,28,28,7780454278,28,7780454278 10.5281/zenodo.16522,,1,software,,2,,,,,,,,2,46,2,2,46,50,846534,50,846534 10.5281/zenodo.16534,10.5281/zenodo.592327,1,software,https://github.com/aeantipov/gftools,0,5,"{""C++"": 201813, ""CMake"": 14700}",MIT License,5,7,"[condensed-matter, greens-functions, c-plus-plus, quantum-mechanics]",5,0,16,2,2,26,29,185050,16,0 10.5281/zenodo.16539,10.5281/zenodo.593371,1,software,https://github.com/Sophilyplum/sophiabeads-datasets,24,3,"{""C"": 31254, ""MATLAB"": 14873}",MIT License,1,1,[],1,23,230,27,26,258,293,2034651,255,1801608 10.5281/zenodo.165403,10.5281/zenodo.595132,1,software,https://github.com/CGATOxford/UMI-tools,2,118,"{""Python"": 264913, ""Shell"": 450}",MIT License,199,35,[],199,1,20,73,14,112,119,714964828,20,347376 10.5281/zenodo.16541,,1,software,https://github.com/cwhidden/random_spr_walk,0,0,"{""C++"": 119572, ""Shell"": 10917, ""Perl"": 3986, ""R"": 3883, ""JavaScript"": 632, ""Perl 6"": 145}",,1,3,[],1,0,3,0,0,3,3,0,3,0 10.5281/zenodo.16543,,1,software,https://github.com/cwhidden/spr_neighbors,0,0,"{""C++"": 525271, ""Perl"": 4507, ""Makefile"": 1442, ""Perl 6"": 486}",,0,3,[],0,0,5,0,0,5,5,0,5,0 10.5281/zenodo.165514,,1,dataset,,255,,,,,,,,161,248,255,161,248,262,2149632428687,262,2149632428687 10.5281/zenodo.165522,,1,publication,,4,,,,,,,,4,5,4,4,5,5,61222012,5,61222012 10.5281/zenodo.165760,,1,dataset,,10,,,,,,,,7,17,10,7,17,18,3148,18,3148 10.5281/zenodo.165785,,1,software,https://github.com/wkew/FTMSVisualization,8,5,"{""Jupyter Notebook"": 6405609, ""HTML"": 503620, ""Python"": 104093}",GNU General Public License v3.0,4,3,[],4,8,125,8,8,125,128,57291128,128,57291128 10.5281/zenodo.1658103,10.5281/zenodo.1620526,1,software,https://github.com/stajichlab/AAFTF,0,0,"{""Python"": 106427, ""Shell"": 1802}",MIT License,1,3,[],1,0,30,0,0,31,40,0,36,0 10.5281/zenodo.165818,10.5281/zenodo.597336,1,software,https://github.com/Tom-Brouwer/TwitterFloodMapping,10,1,"{""Python"": 97945}",MIT License,0,0,[],0,8,43,10,8,43,46,17532330,46,17532330 10.5281/zenodo.165992,,1,software,https://github.com/sanchak/YeATSAM,0,0,"{""Perl"": 2318949, ""Shell"": 230218, ""CSS"": 9035, ""Python"": 4026, ""HTML"": 3796, ""Perl 6"": 1634, ""TeX"": 1128, ""Groff"": 69, ""Tcl"": 62}",,0,1,[],0,0,27,0,0,27,27,0,27,0 10.5281/zenodo.166017,,1,software,https://github.com/AstraZeneca-NGS/disambiguate,0,11,"{""C++"": 177973, ""Python"": 17536}",MIT License,15,25,[],15,0,61,0,0,61,61,0,61,0 10.5281/zenodo.166241,,1,publication,,12,,,,,,,,11,20,12,11,20,21,31433820,21,31433820 10.5281/zenodo.166269,,1,software,,0,,,,,,,,0,10,0,0,10,10,0,10,0 10.5281/zenodo.166289,,1,software,https://github.com/carlabosia/CompetingRNAs,0,1,"{""MATLAB"": 31325}",Other,0,1,[],0,0,14,0,0,14,14,0,14,0 10.5281/zenodo.16629,,1,publication,,12,,,,,,,,12,6,12,12,6,6,2329644,6,2329644 10.5281/zenodo.166337,10.5281/zenodo.592515,1,software,https://github.com/nipy/PySurfer,2,71,"{""Python"": 253781, ""PowerShell"": 1375, ""Makefile"": 709}","BSD 3-Clause ""New"" or ""Revised"" License",125,22,[],125,1,59,10,4,67,70,121899182,60,23830730 10.5281/zenodo.166356,,1,publication,,101,,,,,,,,90,115,101,90,115,121,2462537863,121,2462537863 10.5281/zenodo.16636,,1,software,,8,,,,,,,,8,241,8,8,241,249,7709584,249,7709584 10.5281/zenodo.166378,,1,publication,,88,,,,,,,,82,316,88,82,316,349,29668232,349,29668232 10.5281/zenodo.166392,,1,software,https://github.com/griffinp/desiccation-selection,2,0,"{""R"": 450864, ""Python"": 9945}",,0,1,[],0,2,7,2,2,7,9,209896,9,209896 10.5281/zenodo.166394,,1,software,https://github.com/griffinp/Sel_Line,0,0,"{""Python"": 49731}",,0,1,[],0,0,7,0,0,7,7,0,7,0 10.5281/zenodo.166547,10.5281/zenodo.595240,1,software,https://github.com/ggobi/ggally,0,85,"{""R"": 412361}",,301,23,[],301,0,49,2,2,124,129,1717208,50,0 10.5281/zenodo.166691,,1,software,https://github.com/chnchg/measim,0,0,"{""Jupyter Notebook"": 1079817, ""C++"": 102986, ""HTML"": 16341, ""Python"": 7559, ""Makefile"": 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10.5281/zenodo.166813,10.5281/zenodo.595951,1,software,https://github.com/cdiener/proliferation,1,3,"{""R"": 27982, ""Python"": 7212, ""C++"": 3650}",MIT License,0,1,"[cancer-research, cancer, data-science, machine-learning, proliferation, docker, analysis, metabolic-models, r, tcga, nci60]",0,1,8,1,1,13,13,14092758,8,14092758 10.5281/zenodo.16685,,1,software,https://github.com/megabyte22/maternal_effects,4,0,"{""C++"": 44070, ""Python"": 12344, ""Shell"": 453}",,0,1,[],0,4,20,4,4,20,20,74316,20,74316 10.5281/zenodo.167068,10.5281/zenodo.597031,1,software,https://github.com/maurov/xraysloth,0,2,"{""Python"": 641227, ""Jupyter Notebook"": 27025, ""IDL"": 882, ""Batchfile"": 57}","BSD 3-Clause ""New"" or ""Revised"" License",2,3,"[x-ray-physics, x-ray-spectroscopy, x-ray-optics, ray-tracing, x-ray-instrumentation, python, data-analysis, x-ray-diffraction, synchrotron, x-ray-absorption-spectroscopy, x-ray-absorption-fine-structure, x-ray-emission-spectroscopy]",2,0,8,0,0,18,18,0,8,0 10.5281/zenodo.16707,,1,software,https://github.com/astrojs/fitsjs,0,15,"{""JavaScript"": 201547, ""CoffeeScript"": 99498, ""HTML"": 9267, ""CSS"": 6444, ""Python"": 1242, ""Shell"": 672}",MIT License,65,10,[],65,0,49,0,0,49,50,0,50,0 10.5281/zenodo.167070,10.5281/zenodo.594590,1,dataset,https://github.com/earth2observe/water-resource-reanalysis-v1,17,0,"{""HTML"": 1284725, ""CSS"": 2438, ""JavaScript"": 1010}",,1,3,[],1,10,155,19,12,211,231,3127887352,167,2790426427 10.5281/zenodo.167120,,1,publication,,4,,,,,,,,4,12,4,4,12,12,3824764,12,3824764 10.5281/zenodo.167123,10.5281/zenodo.595675,1,software,https://github.com/shadowk29/CUSUM,0,3,"{""C"": 154504, ""C++"": 8728, ""Makefile"": 539}",GNU General Public License v3.0,1,2,"[c, nanopore, dna, digital-signal-processing, time-series-analysis, feature-detection, feature-extraction, bioinformatics, single-molecule]",1,0,7,0,0,20,22,0,9,0 10.5281/zenodo.167132,,1,software,https://github.com/fgailly/CMOEplus,0,0,"{""Java"": 37179}",,0,1,[],0,0,18,0,0,18,18,0,18,0 10.5281/zenodo.167136,,1,software,,7,,,,,,,,7,135,7,7,135,136,243007926,136,243007926 10.5281/zenodo.167143,,1,dataset,https://github.com/JinfengXiao/DWCox,2,0,"{""R"": 3245, ""Shell"": 285}",MIT License,0,1,[],0,2,17,2,2,17,17,882172,17,882172 10.5281/zenodo.16724,,1,dataset,,20,,,,,,,,19,131,20,19,131,133,1307928212,133,1307928212 10.5281/zenodo.167274,,1,software,https://github.com/ListerLab/TEPID,12,11,"{""Python"": 148213, ""Shell"": 4559}",GNU General Public License v3.0,12,6,[],12,12,119,12,12,119,129,533207340,129,533207340 10.5281/zenodo.167343,10.5281/zenodo.593424,1,software,https://github.com/barentsen/k2mosaic,0,2,"{""Python"": 30280}",MIT License,0,1,[],0,0,9,10,5,12,14,4315456,11,0 10.5281/zenodo.167351,10.5281/zenodo.594505,1,software,https://github.com/anne-urai/motionEnergy,5,5,"{""MATLAB"": 42949}",MIT License,4,10,[],4,5,151,21,19,300,334,309520,171,120720 10.5281/zenodo.167370,10.5281/zenodo.592753,1,software,https://github.com/NMRLipids/lipid_ionINTERACTION,0,8,"{""TeX"": 385352, ""Shell"": 300490, ""Gnuplot"": 38549, ""Awk"": 1349}",,0,4,[],0,0,11,0,0,32,33,0,12,0 10.5281/zenodo.167381,,1,publication,,153,,,,,,,,141,918,153,141,918,966,70142697,966,70142697 10.5281/zenodo.16742,,1,software,https://github.com/welcheb/fw_i3cm1i_3pluspoint_berglund_QPBO,2,3,"{""MATLAB"": 53978}",Other,2,1,[],2,2,18,2,2,18,18,293894964,18,293894964 10.5281/zenodo.167453,10.5281/zenodo.595021,1,software,https://github.com/hall-lab/svtools,1,25,"{""Python"": 441512, ""Shell"": 4721, ""Perl"": 2266}",MIT License,62,13,"[bioinformatics, structural-variation]",62,1,29,14,4,296,330,1412303980,30,127564584 10.5281/zenodo.167463,,1,publication,,7,,,,,,,,5,37,7,5,37,39,143951500,39,143951500 10.5281/zenodo.167551,,1,video,,11,,,,,,,,10,71,11,10,71,78,115901857670,78,115901857670 10.5281/zenodo.167595,10.5281/zenodo.592956,1,software,https://github.com/openphacts/ops.js,0,5,"{""JavaScript"": 824513, ""HTML"": 11916, ""CSS"": 6537, ""Shell"": 455}",MIT License,3,45,"[javascript, nodejs, openphacts]",3,0,28,0,0,74,87,0,36,0 10.5281/zenodo.167602,,1,dataset,,0,,,,,,,,0,6,0,0,6,6,0,6,0 10.5281/zenodo.16776,,1,dataset,https://github.com/bcmd/bsrv,4,0,"{""R"": 6956}",Creative Commons Attribution 4.0 International,0,1,[],0,4,55,4,4,55,55,285246244,55,285246244 10.5281/zenodo.167780,10.5281/zenodo.597113,1,software,https://github.com/RahmanTeam/DECoN,0,7,"{""R"": 1330240, ""HTML"": 733784, ""Tcl"": 220863, ""C"": 68762, ""CSS"": 37023, ""q"": 16087, ""Batchfile"": 3336, ""C++"": 3304, ""Shell"": 3067, ""MATLAB"": 781, ""TypeScript"": 567, ""Assembly"": 266, ""Scheme"": 134}",,12,6,[],12,0,61,213,179,602,712,8373433092,63,0 10.5281/zenodo.167870,,1,software,https://github.com/fangohr/paper-2016-Cortes-etal-NEBM-test-system,4,0,"{""Jupyter Notebook"": 695250, ""Python"": 29358, ""POV-Ray SDL"": 1904, ""Makefile"": 1184}",,0,2,[],0,3,19,4,3,19,21,4683508,21,4683508 10.5281/zenodo.167874,,1,software,https://github.com/davidcortesortuno/paper-2016-Cortes-etal-Thermal-stability-and-topological-protection-of-skyrmions,1,0,"{""Python"": 49778, ""Shell"": 20198, ""Makefile"": 4039}",,2,2,[],2,1,34,1,1,34,34,3233333,34,3233333 10.5281/zenodo.168019,10.5281/zenodo.597072,1,software,https://github.com/danchubb/CanVar,0,0,"{""JavaScript"": 1097496, ""HTML"": 200415, ""Python"": 94775, ""CSS"": 32861, ""Perl"": 506}",MIT License,3,1,[],3,0,8,0,0,8,8,0,8,0 10.5281/zenodo.168034,,1,software,https://github.com/VIB-PSB/PlantRRBS,2,0,"{""Shell"": 60834, ""Python"": 18469, ""Perl"": 3480}",GNU General Public License v3.0,2,2,[],2,2,18,2,2,18,19,116444,19,116444 10.5281/zenodo.168039,,1,software,https://github.com/SrivastavaLab/cardoso2008,1,0,"{""R"": 6855}",MIT License,0,3,[],0,1,7,1,1,7,7,68843,7,68843 10.5281/zenodo.16804,,1,software,https://github.com/DarkEnergyScienceCollaboration/chroma,0,0,"{""Ruby"": 2673561, ""Python"": 799729}",,6,24,[],6,0,9,0,0,9,9,0,9,0 10.5281/zenodo.168045,,1,dataset,,2,,,,,,,,2,6,2,2,6,6,17940,6,17940 10.5281/zenodo.168094,,1,software,https://github.com/timoast/Arabidopsis-TE-variants,12,0,"{""R"": 117363, ""Python"": 47661, ""Shell"": 27413}",GNU General Public License v3.0,4,5,[],4,10,103,12,10,103,115,1826815944,115,1826815944 10.5281/zenodo.168177,10.5281/zenodo.597024,1,software,https://github.com/akels/MDrop,2,1,"{""Julia"": 166425, ""Mathematica"": 3137, ""MATLAB"": 262}",,0,2,"[simulation, bem]",0,2,31,3,3,35,38,121282620,34,119938722 10.5281/zenodo.168212,,1,software,https://github.com/CollasLab/Chrom3D,0,6,"{""C++"": 78036, ""Makefile"": 290}",MIT License,20,5,[],20,0,48,0,0,48,48,0,48,0 10.5281/zenodo.168228,10.5281/zenodo.593626,1,software,https://github.com/AASJournals/AASTeX60,1,21,"{""TeX"": 227817}",LaTeX Project Public License v1.3c,28,10,"[journals, manuscripts, astronomy, aastex, bibtex, citation]",28,1,21,5,5,67,80,6019798,21,1916806 10.5281/zenodo.168248,,1,dataset,,2,,,,,,,,2,19,2,2,19,19,185676,19,185676 10.5281/zenodo.16830,,1,dataset,,17,,,,,,,,4,27,17,4,27,29,8135173577,29,8135173577 10.5281/zenodo.168370,,1,software,,66,,,,,,,,49,70,66,49,70,77,6551142261,77,6551142261 10.5281/zenodo.168390,10.5281/zenodo.591746,1,software,https://github.com/ComputationalRadiationPhysics/picongpu,2,141,"{""C++"": 3429595, ""Shell"": 249722, ""Python"": 151958, ""CMake"": 63536, ""Dockerfile"": 4852, ""Awk"": 2245, ""Gnuplot"": 1136}",Other,350,49,"[laser, plasma, physics, gpu, physics-simulation, gpu-computing, particle-accelerator, particle-in-cell, pic, research]",350,1,109,48,11,342,429,150452842,109,4881968 10.5281/zenodo.168442,,1,dataset,,29,,,,,,,,4,20,29,4,20,22,61875,22,61875 10.5281/zenodo.1685054,10.5281/zenodo.1325094,1,software,https://github.com/kerguler/albopictusR,2,0,"{""R"": 14084}",GNU General Public License v3.0,0,1,[],0,2,24,11,8,59,70,269049,27,48918 10.5281/zenodo.1685289,10.5281/zenodo.1325110,1,software,https://github.com/kerguler/albopictus,4,1,"{""C"": 255374, ""Python"": 64527}",GNU General Public License v3.0,0,1,[],0,4,26,8,7,53,68,221081128,31,12760152 10.5281/zenodo.168576,,1,dataset,,4,,,,,,,,3,24,4,3,24,25,900353556,25,900353556 10.5281/zenodo.168582,,1,image,,107,,,,,,,,97,31,107,97,31,31,4931668,31,4931668 10.5281/zenodo.168588,,1,poster,,8,,,,,,,,6,11,8,6,11,13,1357536,13,1357536 10.5281/zenodo.17004,,1,dataset,,3,,,,,,,,3,44,3,3,44,44,376235452,44,376235452 10.5281/zenodo.17098,,1,dataset,,14,,,,,,,,13,51,14,13,51,54,989184,54,989184 10.5281/zenodo.17129,10.5281/zenodo.592787,1,software,https://github.com/ceholden/yatsm,0,25,"{""Python"": 311968, ""Jupyter Notebook"": 72629, ""Shell"": 2391}",MIT License,47,19,"[python, landsat, remotesensing, timeseries]",47,0,50,6,6,200,223,24987141,50,0 10.5281/zenodo.17163,10.5281/zenodo.592707,1,software,https://github.com/karmel/homer-idr,0,7,"{""R"": 113488, ""Python"": 38308, ""Shell"": 6728}",,10,1,[],10,0,44,0,0,93,95,0,46,0 10.5281/zenodo.17232,,1,dataset,,108,,,,,,,,53,315,108,53,315,328,27857781114,328,27857781114 10.5281/zenodo.173560,10.5281/zenodo.676504,1,software,,5,,,,,,,,5,114,20,10,157,178,735344076,119,181558635 10.5281/zenodo.17358,,1,software,,3,,,,,,,,3,43,3,3,43,45,10413,45,10413 10.5281/zenodo.17375,10.5281/zenodo.593618,1,software,https://github.com/greatfireball/NCBI-Taxonomy,6,1,"{""Perl"": 46403, ""Perl 6"": 9166, ""Shell"": 429}",MIT License,2,3,[],2,6,56,18,10,66,89,550382,63,146346 10.5281/zenodo.17385,10.5281/zenodo.593575,1,software,https://github.com/edsu/twarc,0,144,"{""Python"": 172238}",MIT License,596,32,[],596,0,22,3,3,94,98,116406,23,0 10.5281/zenodo.17403,,1,publication,,20,,,,,,,,19,36,20,19,36,39,36471920,39,36471920 10.5281/zenodo.1742390,10.5281/zenodo.1742389,1,dataset,,19,,,,,,,,6,59,19,6,59,79,2238213790,79,2238213790 10.5281/zenodo.17442,,1,dataset,,28,,,,,,,,26,103,28,26,103,105,28970192072,105,28970192072 10.5281/zenodo.1744809,10.5281/zenodo.1744808,1,dataset,,6,,,,,,,,6,26,6,6,26,35,208122,35,208122 10.5281/zenodo.1745488,10.5281/zenodo.1697337,1,software,https://github.com/ZKSI/QuantumInformation.jl,10,5,"{""Julia"": 86284}",GNU General Public License v3.0,23,5,"[quantum-information, quantum-computing, random-matrix-theory]",23,8,24,48,20,45,57,6620393,26,1323740 10.5281/zenodo.17462,10.5281/zenodo.593610,1,software,https://github.com/poliastro/poliastro,3,122,"{""Python"": 392033, ""Jupyter Notebook"": 4110, ""HTML"": 3053, ""Shell"": 150}",MIT License,263,21,"[python, science, space, scientific-computing, orbital-simulation, space-physics]",263,2,30,51,12,169,185,116803038,32,2094831 10.5281/zenodo.17464,,1,publication,,7,,,,,,,,6,20,7,6,20,20,2695000,20,2695000 10.5281/zenodo.17487,,1,dataset,,35,,,,,,,,13,107,35,13,107,114,8512098862,114,8512098862 10.5281/zenodo.17491,,1,publication,,125,,,,,,,,123,168,125,123,168,170,93450500,170,93450500 10.5281/zenodo.17508,,1,software,https://github.com/citizen-cyberscience-centre/cernvmwrapper,0,4,"{""C++"": 75059, ""Perl"": 4771, ""Makefile"": 1038}",Other,8,2,[],8,0,12,0,0,12,12,0,12,0 10.5281/zenodo.17514,,1,software,https://github.com/F1000Research/MDRpred,0,0,"{""Python"": 5633}",,0,1,[],0,0,13,0,0,13,13,0,13,0 10.5281/zenodo.175540,,1,publication,,0,,,,,,,,0,18,0,0,18,19,0,19,0 10.5281/zenodo.17606,,1,software,,128,,,,,,,,78,700,128,78,700,740,408199455,740,408199455 10.5281/zenodo.17641,,1,software,,6,,,,,,,,5,199,6,5,199,201,95087472,201,95087472 10.5281/zenodo.176452,,1,dataset,,43,,,,,,,,38,2,43,38,2,2,492687,2,492687 10.5281/zenodo.176772,,1,publication,,0,,,,,,,,0,24,0,0,24,26,0,26,0 10.5281/zenodo.177060,,1,publication,,0,,,,,,,,0,3,0,0,3,3,0,3,0 10.5281/zenodo.17719,,1,software,,96,,,,,,,,85,116,96,85,116,119,129136407,119,129136407 10.5281/zenodo.17721,10.5281/zenodo.593657,1,software,https://github.com/mila-udem/blocks,0,356,"{""Python"": 756588}",Other,1147,88,[],1147,0,5,5,2,31,33,3346505,5,0 10.5281/zenodo.177912,,1,publication,,0,,,,,,,,0,3,0,0,3,3,0,3,0 10.5281/zenodo.17804,,1,software,https://github.com/duffymeg/BroodParasiteDescription,5,2,"{""R"": 13272}",,7,1,[],7,5,172,5,5,172,178,65830,178,65830 10.5281/zenodo.17808,10.5281/zenodo.592805,1,software,https://github.com/davharris/rosalia,0,2,"{""HTML"": 4806065, ""TeX"": 645927, ""R"": 29634, ""Shell"": 3593}",Other,5,3,[],5,0,15,0,0,20,21,0,15,0 10.5281/zenodo.17809,,1,software,https://github.com/darencard/RADpipe,1,3,"{""Python"": 80796, ""Shell"": 9956, ""R"": 8361}",GNU General Public License v2.0,5,1,[],5,1,21,1,1,21,21,27497,21,27497 10.5281/zenodo.178613,,1,software,https://github.com/greenelab/continuous_analysis,0,12,"{""Jupyter Notebook"": 538040, 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10.5281/zenodo.180149,,1,publication,,0,,,,,,,,0,39,0,0,39,40,0,40,0 10.5281/zenodo.18041,,1,software,https://github.com/mikgroup/bart,1,0,{},,0,3,[],0,1,40,1,1,40,41,371181,41,371181 10.5281/zenodo.18123,,1,presentation,,13,,,,,,,,13,28,13,13,28,28,3326648,28,3326648 10.5281/zenodo.181531,,1,publication,,0,,,,,,,,0,2,0,0,2,2,0,2,0 10.5281/zenodo.18169,10.5281/zenodo.593708,1,software,https://github.com/mariagraziapia/bssim,0,0,"{""C++"": 120964, ""Shell"": 29924, ""Makefile"": 854}",Other,0,1,[],0,0,6,0,0,30,32,0,6,0 10.5281/zenodo.18190,,1,software,https://github.com/dwinter/freqseq,0,0,"{""C++"": 13888, ""CMake"": 428}",,1,1,[],1,0,21,0,0,21,21,0,21,0 10.5281/zenodo.182143,,1,publication,,0,,,,,,,,0,7,0,0,7,7,0,7,0 10.5281/zenodo.18233,,1,software,https://github.com/MouseWalker/MouseWalker,14,0,{},Other,0,1,[],0,12,56,14,12,56,60,311595564,60,311595564 10.5281/zenodo.18246,10.5281/zenodo.596519,1,software,https://github.com/cmci/CellClusterIndex,0,0,"{""Python"": 2739}",,0,1,[],0,0,22,0,0,24,26,0,23,0 10.5281/zenodo.182487,,1,publication,,0,,,,,,,,0,4,0,0,4,5,0,5,0 10.5281/zenodo.182539,,1,publication,,0,,,,,,,,0,18,0,0,18,20,0,20,0 10.5281/zenodo.182839,,1,publication,,0,,,,,,,,0,1,0,0,1,1,0,1,0 10.5281/zenodo.183065,,1,publication,,0,,,,,,,,0,16,0,0,16,16,0,16,0 10.5281/zenodo.183289,,1,publication,,0,,,,,,,,0,34,0,0,34,34,0,34,0 10.5281/zenodo.183676,10.5281/zenodo.591746,1,software,https://github.com/ComputationalRadiationPhysics/picongpu,2,141,"{""C++"": 3429595, ""Shell"": 249722, ""Python"": 151958, ""CMake"": 63536, ""Dockerfile"": 4852, ""Awk"": 2245, ""Gnuplot"": 1136}",Other,350,49,"[laser, plasma, physics, gpu, physics-simulation, gpu-computing, particle-accelerator, particle-in-cell, pic, research]",350,1,19,48,11,342,429,150452842,20,4882992 10.5281/zenodo.18369,,1,software,https://github.com/bmcfee/librosa,2,483,"{""Python"": 849782, ""MATLAB"": 18269, ""Jupyter Notebook"": 7257, ""Shell"": 985}",ISC License,2825,132,"[audio, python, music, dsp, librosa, scipy, nyucds]",2825,2,59,2,2,59,64,58460790,64,58460790 10.5281/zenodo.18390,10.5281/zenodo.593456,1,software,https://github.com/richpsharp/forest_carbon_edge_effects,10,0,"{""Python"": 76171, ""Shell"": 116}",Apache License 2.0,0,1,[],0,10,58,10,10,83,83,275860,58,275860 10.5281/zenodo.18400,,1,software,,0,,,,,,,,0,52,0,0,52,53,0,53,0 10.5281/zenodo.184126,,1,publication,,0,,,,,,,,0,5,0,0,5,5,0,5,0 10.5281/zenodo.184289,,1,publication,,0,,,,,,,,0,11,0,0,11,11,0,11,0 10.5281/zenodo.185011,10.5281/zenodo.660162,1,dataset,,19,,,,,,,,3,40,19,3,40,45,227320046,45,227320046 10.5281/zenodo.18539,,1,software,https://github.com/RGLab/MAST,0,30,"{""R"": 331843}",,77,9,[],77,0,27,0,0,27,29,0,29,0 10.5281/zenodo.18556,,1,software,https://github.com/kzarns/ChIP-Seq,1,1,{},MIT License,1,3,[],1,1,15,1,1,15,17,171663,17,171663 10.5281/zenodo.18578,,1,dataset,,39,,,,,,,,29,183,39,29,183,198,28290533661,198,28290533661 10.5281/zenodo.185858,,1,publication,,0,,,,,,,,0,3,0,0,3,3,0,3,0 10.5281/zenodo.18586,,1,software,,24,,,,,,,,13,43,24,13,43,43,639023,43,639023 10.5281/zenodo.18620,,1,dataset,,78,,,,,,,,39,109,78,39,109,110,11376485145,110,11376485145 10.5281/zenodo.18622,,1,dataset,https://github.com/4ment/aiv-rate-heterogeneity,2,0,{},,0,1,"[influenza, data]",0,2,32,2,2,32,32,1900998,32,1900998 10.5281/zenodo.186597,,1,publication,,0,,,,,,,,0,2,0,0,2,2,0,2,0 10.5281/zenodo.18690,,1,software,https://github.com/RehabEngGroup/MOtoNMS,12,9,"{""MATLAB"": 442925}",GNU General Public License v3.0,9,9,[],9,12,95,12,12,95,101,29877144,101,29877144 10.5281/zenodo.18696,,1,publication,,8,,,,,,,,7,27,8,7,27,27,3691752,27,3691752 10.5281/zenodo.18707,10.5281/zenodo.593535,1,software,https://github.com/allenpope/Landsat8_SupraglacialLakes,1,7,"{""MATLAB"": 176374}",Other,1,1,[],1,1,27,3,3,47,47,985069,27,407813 10.5281/zenodo.187330,,1,publication,,0,,,,,,,,0,7,0,0,7,9,0,9,0 10.5281/zenodo.187558,,1,software,https://github.com/ercrema/CulturalTransmissionModel,1,1,"{""R"": 23579}",,11,2,[],11,1,33,1,1,33,33,16250,33,16250 10.5281/zenodo.18759,10.5281/zenodo.593721,1,software,https://github.com/jochym/Elastic,1,9,"{""Python"": 81363, ""TeX"": 1788, ""Shell"": 791}",GNU General Public License v3.0,11,5,[],11,1,56,15,10,135,161,7594841,56,228520 10.5281/zenodo.18764,,1,dataset,,146,,,,,,,,128,353,146,128,353,361,581202746,361,581202746 10.5281/zenodo.18787,,1,software,,1,,,,,,,,1,125,1,1,125,127,101936,127,101936 10.5281/zenodo.188085,,1,publication,,0,,,,,,,,0,9,0,0,9,10,0,10,0 10.5281/zenodo.18815,10.5281/zenodo.596579,1,software,https://github.com/rootpy/rootpy,0,67,"{""Python"": 861605, ""Shell"": 3089, ""Makefile"": 2778, ""C++"": 109}","BSD 3-Clause ""New"" or ""Revised"" License",175,29,"[python, root, cern, hep, numpy, hdf5, matplotlib]",175,0,9,1,1,67,77,787709,9,0 10.5281/zenodo.188316,,1,publication,,0,,,,,,,,0,9,0,0,9,11,0,11,0 10.5281/zenodo.188438,,1,publication,,0,,,,,,,,0,5,0,0,5,5,0,5,0 10.5281/zenodo.188523,,1,publication,,0,,,,,,,,0,2,0,0,2,2,0,2,0 10.5281/zenodo.18854,,1,dataset,,9,,,,,,,,6,42,9,6,42,43,273520,43,273520 10.5281/zenodo.18897,10.5281/zenodo.596579,1,software,https://github.com/rootpy/rootpy,1,67,"{""Python"": 861605, ""Shell"": 3089, ""Makefile"": 2778, ""C++"": 109}","BSD 3-Clause ""New"" or ""Revised"" License",175,29,"[python, root, cern, hep, numpy, hdf5, matplotlib]",175,1,56,1,1,67,77,787709,61,787709 10.5281/zenodo.18898,,1,dataset,,1,,,,,,,,1,37,1,1,37,38,832282079,38,832282079 10.5281/zenodo.18902,,1,publication,,8,,,,,,,,7,21,8,7,21,22,23706384,22,23706384 10.5281/zenodo.189374,,1,publication,,0,,,,,,,,0,25,0,0,25,28,0,28,0 10.5281/zenodo.18943,,1,dataset,,68,,,,,,,,13,23,68,13,23,23,7676151304,23,7676151304 10.5281/zenodo.189873,,1,publication,,0,,,,,,,,0,19,0,0,19,24,0,24,0 10.5281/zenodo.189912,,1,publication,,0,,,,,,,,0,7,0,0,7,7,0,7,0 10.5281/zenodo.189932,,1,publication,,0,,,,,,,,0,4,0,0,4,4,0,4,0 10.5281/zenodo.1899458,10.5281/zenodo.1205166,1,dataset,,77,,,,,,,,65,829,1770,707,6856,9394,63877152704534,965,2693319637778 10.5281/zenodo.190129,,1,publication,,0,,,,,,,,0,45,0,0,45,47,0,47,0 10.5281/zenodo.190177,,1,publication,,0,,,,,,,,0,8,0,0,8,8,0,8,0 10.5281/zenodo.19041,10.5281/zenodo.591410,1,dataset,https://github.com/RGLab/MASTdata,0,1,"{""HTML"": 11701918, ""R"": 38499}",,0,2,[],0,0,23,0,0,63,63,0,23,0 10.5281/zenodo.19042,10.5281/zenodo.592322,1,software,https://github.com/bioasp/iggy,2,1,"{""Rust"": 97371}",GNU General Public License v3.0,2,1,[cell-signalling],2,2,44,2,2,65,79,1393690,53,1393690 10.5281/zenodo.190422,,1,publication,,0,,,,,,,,0,28,0,0,28,31,0,31,0 10.5281/zenodo.190439,,1,publication,,0,,,,,,,,0,8,0,0,8,9,0,9,0 10.5281/zenodo.19045,10.5281/zenodo.593779,1,software,https://github.com/fabiorinnone/NetMatchStar,0,0,"{""Java"": 696280, ""HTML"": 26139}",,1,1,[],1,0,29,0,0,37,39,0,29,0 10.5281/zenodo.190489,,1,publication,,2,,,,,,,,2,8,2,2,8,8,2715612,8,2715612 10.5281/zenodo.190505,,1,publication,,0,,,,,,,,0,5,0,0,5,5,0,5,0 10.5281/zenodo.190572,,1,publication,,0,,,,,,,,0,12,0,0,12,12,0,12,0 10.5281/zenodo.190697,,1,publication,,0,,,,,,,,0,23,0,0,23,23,0,23,0 10.5281/zenodo.19071,10.5281/zenodo.592892,1,software,https://github.com/Rexamine/stringi,3,27,"{""C++"": 26394265, ""C"": 7338332, ""HTML"": 1803284, ""R"": 914661, ""Objective-C"": 56142, ""M4"": 45409, ""Shell"": 14987, ""TeX"": 3540, ""CSS"": 1210}",Other,160,18,"[stringi, icu, icu4c, r, regex, regexp, string-manipulation]",160,2,56,61,21,177,196,2602933024,60,76477437 10.5281/zenodo.190820,,1,publication,,0,,,,,,,,0,18,0,0,18,22,0,22,0 10.5281/zenodo.190903,,1,publication,,0,,,,,,,,0,6,0,0,6,6,0,6,0 10.5281/zenodo.191064,,1,publication,,0,,,,,,,,0,8,0,0,8,8,0,8,0 10.5281/zenodo.191088,,1,publication,,0,,,,,,,,0,9,0,0,9,9,0,9,0 10.5281/zenodo.191126,,1,publication,,0,,,,,,,,0,9,0,0,9,11,0,11,0 10.5281/zenodo.191157,,1,publication,,0,,,,,,,,0,2,0,0,2,2,0,2,0 10.5281/zenodo.19150,,1,dataset,,0,,,,,,,,0,41,0,0,41,41,0,41,0 10.5281/zenodo.19154,,1,software,https://github.com/thmosqueiro/Probab-Greenberg-Hastings,2,0,"{""Fortran"": 114641, ""Shell"": 2687, ""Python"": 782, ""Gnuplot"": 592}",MIT License,4,2,"[physics, probabilistic-greenberg-hastings, computational-neuroscience, automata, criticality]",4,1,10,2,1,10,12,219820,12,219820 10.5281/zenodo.19156,,1,publication,,1,,,,,,,,1,20,1,1,20,20,1328,20,1328 10.5281/zenodo.19173,,1,publication,,6,,,,,,,,5,38,6,5,38,38,2079858,38,2079858 10.5281/zenodo.191734,,1,publication,,0,,,,,,,,0,26,0,0,26,26,0,26,0 10.5281/zenodo.191785,,1,publication,,4,,,,,,,,4,9,4,4,9,9,12641404,9,12641404 10.5281/zenodo.191804,,1,publication,,0,,,,,,,,0,16,0,0,16,16,0,16,0 10.5281/zenodo.191887,,1,dataset,,9,,,,,,,,5,47,9,5,47,49,10598,49,10598 10.5281/zenodo.191891,,1,dataset,,23,,,,,,,,14,82,23,14,82,90,25527,90,25527 10.5281/zenodo.191899,,1,dataset,,11,,,,,,,,3,26,11,3,26,27,10564,27,10564 10.5281/zenodo.191929,,1,dataset,,49,,,,,,,,8,47,49,8,47,49,147289,49,147289 10.5281/zenodo.191982,,1,dataset,,7,,,,,,,,4,30,7,4,30,30,10648,30,10648 10.5281/zenodo.192111,10.5281/zenodo.595808,1,software,https://github.com/rinde/RinLog,0,6,"{""Java"": 484031, ""R"": 1437}",Other,6,2,[],6,0,1,3,3,36,37,426862,1,0 10.5281/zenodo.192128,,1,dataset,,4,,,,,,,,3,45,4,3,45,46,2640,46,2640 10.5281/zenodo.192159,10.5281/zenodo.594896,1,software,https://github.com/dr-rodriguez/Kinematics-App,1,1,"{""Python"": 23071, ""HTML"": 9338, ""CSS"": 1310}",MIT License,0,1,[],0,1,35,1,1,42,43,79909,36,79909 10.5281/zenodo.192184,,1,software,https://github.com/bowenanthony/ig_motif,0,0,"{""R"": 141501}",GNU General Public License v3.0,0,1,[],0,0,8,0,0,8,8,0,8,0 10.5281/zenodo.192186,10.5281/zenodo.597630,1,software,https://github.com/kurator-org/kurator-ffdq,0,0,"{""Java"": 170575, ""Shell"": 564}",Apache License 2.0,0,5,[],0,0,4,0,0,5,5,0,4,0 10.5281/zenodo.192280,,1,software,https://github.com/FrancisCrickInstitute/crick-emstp-miniLM,0,0,"{""Python"": 31373}",GNU General Public License v3.0,0,7,[],0,0,16,0,0,16,16,0,16,0 10.5281/zenodo.192294,,1,dataset,,4,,,,,,,,4,13,4,4,13,14,7760,14,7760 10.5281/zenodo.19230,10.5281/zenodo.610952,1,software,,1,,,,,,,,1,65,19,6,129,152,26162629,68,39206 10.5281/zenodo.19232,,1,software,https://github.com/F1000Research/GEDDplot,0,0,"{""Perl"": 8808}",MIT License,0,1,[],0,0,26,0,0,26,26,0,26,0 10.5281/zenodo.192401,,1,dataset,,7,,,,,,,,7,39,7,7,39,41,3822,41,3822 10.5281/zenodo.192402,,1,dataset,,2,,,,,,,,2,20,2,2,20,21,542,21,542 10.5281/zenodo.192406,,1,dataset,,3,,,,,,,,2,32,3,2,32,34,1479,34,1479 10.5281/zenodo.192407,,1,publication,,4,,,,,,,,4,26,4,4,26,27,1020,27,1020 10.5281/zenodo.192408,,1,dataset,,3,,,,,,,,3,30,3,3,30,30,1104,30,1104 10.5281/zenodo.192409,,1,dataset,,1,,,,,,,,1,23,1,1,23,24,245,24,245 10.5281/zenodo.192470,,1,dataset,,12,,,,,,,,7,26,12,7,26,27,5700280716,27,5700280716 10.5281/zenodo.192490,,1,publication,,34,,,,,,,,32,13,34,32,13,14,111517914,14,111517914 10.5281/zenodo.192503,,1,software,,0,,,,,,,,0,13,0,0,13,13,0,13,0 10.5281/zenodo.192513,,1,dataset,,0,,,,,,,,0,6,0,0,6,6,0,6,0 10.5281/zenodo.192684,,1,dataset,,120,,,,,,,,67,120,120,67,120,127,82410478511,127,82410478511 10.5281/zenodo.19272,,1,software,,38,,,,,,,,22,456,38,22,456,465,1046368,465,1046368 10.5281/zenodo.192853,,1,software,,10,,,,,,,,2,12,10,2,12,12,21528,12,21528 10.5281/zenodo.19296,,1,dataset,,3,,,,,,,,3,35,3,3,35,40,3405977625,40,3405977625 10.5281/zenodo.192974,,1,software,https://github.com/drsmwhite/Xylella-spread-model,8,0,"{""MATLAB"": 13342}",MIT License,0,0,[],0,7,47,8,7,47,49,1035984,49,1035984 10.5281/zenodo.193020,,1,publication,,5,,,,,,,,5,21,5,5,21,24,677340455,24,677340455 10.5281/zenodo.193080,10.5281/zenodo.645804,1,dataset,,2,,,,,,,,2,24,2,2,47,51,40554476,26,40554476 10.5281/zenodo.19318,,1,publication,,69,,,,,,,,65,128,69,65,128,135,14108430,135,14108430 10.5281/zenodo.193229,,1,publication,,0,,,,,,,,0,9,0,0,9,10,0,10,0 10.5281/zenodo.194138,,1,publication,,0,,,,,,,,0,100,0,0,100,126,0,126,0 10.5281/zenodo.19480,10.5281/zenodo.593828,1,software,,2,,,,,,,,1,29,11,3,123,146,191274389,29,32376034 10.5281/zenodo.195417,,1,software,https://github.com/tflovorn/vo2mft,0,0,"{""Python"": 59517, ""Go"": 56779, ""C"": 9164, ""Makefile"": 938}",MIT License,0,1,[],0,0,6,0,0,6,6,0,6,0 10.5281/zenodo.195512,10.5281/zenodo.779656,1,dataset,,0,,,,,,,,0,6,0,0,6,8,0,8,0 10.5281/zenodo.195678,,1,publication,,0,,,,,,,,0,3,0,0,3,3,0,3,0 10.5281/zenodo.195953,,1,publication,,0,,,,,,,,0,4,0,0,4,4,0,4,0 10.5281/zenodo.196027,,1,publication,,0,,,,,,,,0,13,0,0,13,13,0,13,0 10.5281/zenodo.196048,,1,publication,,0,,,,,,,,0,3,0,0,3,3,0,3,0 10.5281/zenodo.196200,,1,publication,,0,,,,,,,,0,11,0,0,11,11,0,11,0 10.5281/zenodo.19622,,1,software,https://github.com/F1000Research/data-analysis-code,2,0,{},,0,1,[],0,2,16,2,2,16,17,3052,17,3052 10.5281/zenodo.19623,,1,dataset,,9,,,,,,,,9,49,9,9,49,50,368217,50,368217 10.5281/zenodo.196518,,1,publication,,0,,,,,,,,0,1,0,0,1,1,0,1,0 10.5281/zenodo.196535,,1,publication,,0,,,,,,,,0,23,0,0,23,24,0,24,0 10.5281/zenodo.196949,,1,publication,,0,,,,,,,,0,26,0,0,26,29,0,29,0 10.5281/zenodo.197068,10.5281/zenodo.597375,1,software,https://github.com/lmsimp/bioc-pRoloc-hyperLOPIT-workflow,0,1,"{""TeX"": 302858, ""Shell"": 4876, ""R"": 1435, ""Makefile"": 745}",,3,4,[],3,0,17,0,0,43,50,0,19,0 10.5281/zenodo.197077,,1,software,https://github.com/msemon/ToothTranscriptomeAnalyses,0,0,"{""R"": 34744}",,0,2,[],0,0,11,0,0,11,11,0,11,0 10.5281/zenodo.197109,,1,software,,1398,,,,,,,,1245,2180,1398,1245,2180,2290,473502599,2290,473502599 10.5281/zenodo.197230,,1,publication,,0,,,,,,,,0,7,0,0,7,8,0,8,0 10.5281/zenodo.197353,,1,software,https://github.com/sturkarslan/MSB-16-7058,0,0,"{""Python"": 26292, ""R"": 9091}",,0,2,[],0,0,3,0,0,3,3,0,3,0 10.5281/zenodo.197404,10.5281/zenodo.602109,1,dataset,,175,,,,,,,,117,170,175,117,170,188,24207242703,188,24207242703 10.5281/zenodo.197522,,1,publication,,0,,,,,,,,0,4,0,0,4,4,0,4,0 10.5281/zenodo.198196,,1,publication,,0,,,,,,,,0,7,0,0,7,7,0,7,0 10.5281/zenodo.19825,,1,software,https://github.com/F1000Research/SocialNetworkApp,1,0,"{""Java"": 550135}",,0,1,[],0,1,34,1,1,34,34,1554925,34,1554925 10.5281/zenodo.198254,,1,publication,,0,,,,,,,,0,5,0,0,5,5,0,5,0 10.5281/zenodo.19831,,1,publication,,1,,,,,,,,1,47,1,1,47,47,8573717,47,8573717 10.5281/zenodo.19833,,1,publication,,5,,,,,,,,5,8,5,5,8,8,11113515,8,11113515 10.5281/zenodo.19835,,1,software,https://github.com/slimsuite/SLiMScape,0,1,"{""Java"": 138739}",GNU General Public License v3.0,1,2,[],1,0,41,0,0,41,41,0,41,0 10.5281/zenodo.198522,,1,dataset,,6,,,,,,,,5,34,6,5,34,35,226554,35,226554 10.5281/zenodo.198574,,1,publication,,0,,,,,,,,0,3,0,0,3,3,0,3,0 10.5281/zenodo.198599,,1,software,https://github.com/pdebuyl-lab/RMPCDMD,0,2,"{""Fortran"": 429777, ""Python"": 40847, ""CMake"": 5510, ""Shell"": 5411, ""Makefile"": 1352}","BSD 3-Clause ""New"" or ""Revised"" License",6,3,"[fortran, openmp, simulation, hydrodynamics, colloids, nanomotor]",6,0,5,0,0,5,5,0,5,0 10.5281/zenodo.1987185,10.5281/zenodo.1345991,1,software,https://github.com/grandey/draft2017a-region-rfp,2,0,"{""Jupyter Notebook"": 2341284, ""Python"": 40684}",MIT License,1,0,[],1,2,12,20,11,22,48,24759036,23,3086004 10.5281/zenodo.198835,10.5281/zenodo.597408,1,software,https://github.com/gpetty/GMI-resolution-matching,0,0,{},Other,0,1,[],0,0,23,0,0,23,24,0,23,0 10.5281/zenodo.198880,10.5281/zenodo.690144,1,dataset,,7,,,,,,,,5,23,7,5,23,24,162726840051,24,162726840051 10.5281/zenodo.199161,,1,software,,1,,,,,,,,1,14,1,1,14,16,7224521,16,7224521 10.5281/zenodo.19942,,1,software,https://github.com/dwinter/accuMUlate,0,4,"{""C++"": 166929, ""CMake"": 9747, ""Shell"": 2956, ""C"": 92}",MIT License,0,3,[],0,0,9,0,0,9,9,0,9,0 10.5281/zenodo.19957,,1,software,https://github.com/mriphysics/phase_relaxed_CPMG_excitation,1,1,"{""MATLAB"": 21791}",MIT License,1,5,[],1,1,17,1,1,17,19,14176,19,14176 10.5281/zenodo.19958,,1,publication,,5,,,,,,,,5,20,5,5,20,21,12729950,21,12729950 10.5281/zenodo.199938,,1,publication,,0,,,,,,,,0,37,0,0,37,41,0,41,0 10.5281/zenodo.20031,,1,dataset,,5,,,,,,,,2,16,5,2,16,16,6471814632,16,6471814632 10.5281/zenodo.200368,,1,dataset,,3,,,,,,,,3,26,3,3,26,28,412997223,28,412997223 10.5281/zenodo.200391,10.5281/zenodo.597384,1,software,https://github.com/jedorey/CoRNS.py,0,0,"{""Python"": 8328}",GNU General Public License v3.0,0,1,[],0,0,4,0,0,7,9,0,4,0 10.5281/zenodo.200397,,1,publication,,0,,,,,,,,0,12,0,0,12,12,0,12,0 10.5281/zenodo.200410,,1,publication,,37,,,,,,,,34,18,37,34,18,18,35694011,18,35694011 10.5281/zenodo.200415,,1,publication,,16,,,,,,,,15,7,16,15,7,7,10706400,7,10706400 10.5281/zenodo.200504,,1,software,,12,,,,,,,,11,205,12,11,205,211,9175728,211,9175728 10.5281/zenodo.200567,,1,publication,,0,,,,,,,,0,2,0,0,2,2,0,2,0 10.5281/zenodo.200620,,1,publication,,0,,,,,,,,0,3,0,0,3,3,0,3,0 10.5281/zenodo.200648,,1,software,https://github.com/Neuroinflab/PyMICE,0,2,"{""Python"": 564086, ""Jupyter Notebook"": 125582, ""Makefile"": 8259, ""Shell"": 7164}",Other,1,2,[],1,0,9,0,0,9,9,0,9,0 10.5281/zenodo.200834,,1,publication,,0,,,,,,,,0,6,0,0,6,6,0,6,0 10.5281/zenodo.2008645,10.5281/zenodo.1324575,1,software,https://github.com/SaskiaFreytag/cluster_benchmarking_code,8,0,"{""R"": 183762}",,7,2,[],7,7,36,18,15,111,125,106393748,42,47599368 10.5281/zenodo.200895,,1,publication,,0,,,,,,,,0,8,0,0,8,8,0,8,0 10.5281/zenodo.200970,10.5281/zenodo.595952,1,software,https://github.com/LCPQ/quantum_package,1,29,"{""Fortran"": 2511508, ""OCaml"": 279849, ""Python"": 163120, ""Shell"": 25377, ""Makefile"": 2587, ""C"": 1922}",GNU General Public License v2.0,23,16,"[fortran, ocaml, zmq, amazing, computational-chemistry, quantum, quantum-chemistry-programs, chemistry, wavefunction, dft]",23,1,13,2,2,31,36,7251073,13,3755992 10.5281/zenodo.200977,,1,software,https://github.com/GeoffBarrett/BatchTINTV2,1,0,"{""Python"": 89571}",,1,1,[],1,1,11,1,1,11,11,142259687,11,142259687 10.5281/zenodo.201147,,1,dataset,https://github.com/luisDVA/onlineMaterialRodentEc,19,0,"{""R"": 69081}",Creative Commons Zero v1.0 Universal,0,1,[],0,18,126,19,18,126,133,6254154,133,6254154 10.5281/zenodo.202375,,1,software,https://github.com/earthserver-eu/geospatial-workflow-with-wcps,1,1,"{""Jupyter Notebook"": 7830965}",,1,6,[],1,1,4,1,1,4,4,1262246,4,1262246 10.5281/zenodo.202910,,1,software,https://github.com/tschager/OpenMS,0,0,"{""C++"": 22043287, ""Python"": 963974, ""CMake"": 707549, ""XSLT"": 34043, ""R"": 24701, ""Shell"": 13958, ""Ruby"": 11226, ""TeX"": 9732, ""C"": 2804, ""HTML"": 2599, ""Batchfile"": 602}",Other,0,1,[],0,0,10,0,0,10,10,0,10,0 10.5281/zenodo.202950,10.5281/zenodo.597406,1,software,https://github.com/HudsonAlpha/aRNAPipe,0,6,"{""Python"": 170127, ""HTML"": 97632, ""JavaScript"": 95519, ""CSS"": 14387, ""R"": 5581}",MIT License,12,9,[],12,0,8,0,0,8,8,0,8,0 10.5281/zenodo.203129,,1,publication,,0,,,,,,,,0,4,0,0,4,4,0,4,0 10.5281/zenodo.204720,,1,publication,,0,,,,,,,,0,4,0,0,4,4,0,4,0 10.5281/zenodo.204787,,1,publication,,,,,,,,,,,,,,,,,, 10.5281/zenodo.205057,,1,publication,,0,,,,,,,,0,17,0,0,17,17,0,17,0 10.5281/zenodo.205160,,1,publication,,24,,,,,,,,22,43,24,22,43,45,8162496,45,8162496 10.5281/zenodo.205173,,1,publication,,0,,,,,,,,0,6,0,0,6,7,0,7,0 10.5281/zenodo.20544,,1,dataset,,3,,,,,,,,3,29,3,3,29,30,19195860,30,19195860 10.5281/zenodo.205442,,1,software,https://github.com/earthserver-eu/OGC_WCS_tutorial,3,2,"{""Jupyter Notebook"": 144371}",,0,4,[],0,3,20,3,3,20,20,15344955,20,15344955 10.5281/zenodo.20548,,1,dataset,,2,,,,,,,,2,13,2,2,13,14,625587,14,625587 10.5281/zenodo.20549,,1,dataset,,26,,,,,,,,14,39,26,14,39,40,637030,40,637030 10.5281/zenodo.20550,,1,software,,12,,,,,,,,11,59,12,11,59,64,18120,64,18120 10.5281/zenodo.20557,,1,software,https://github.com/SciCrunch/rdw,0,0,"{""Groovy"": 239070, ""Java"": 86536, ""JavaScript"": 34851, ""CSS"": 21644}",Other,0,27,[],0,0,15,0,0,15,15,0,15,0 10.5281/zenodo.20560,,1,software,https://github.com/SciCrunch/resource_disambiguator,1,2,"{""Java"": 923710, ""Shell"": 3549, ""Perl"": 1100}",Other,1,27,[],1,1,31,1,1,31,31,57584554,31,57584554 10.5281/zenodo.20601,,1,software,https://github.com/mengomarlene/postPro4Abq,7,7,"{""Python"": 40814}",GNU General Public License v2.0,3,2,[],3,7,40,7,7,40,42,108220,42,108220 10.5281/zenodo.206114,10.5281/zenodo.592762,1,software,https://github.com/SHTOOLS/SHTOOLS,9,44,"{""Fortran"": 1282159, ""Python"": 746299, ""Makefile"": 22659}","BSD 3-Clause ""New"" or ""Revised"" License",91,13,"[spherical-harmonics, spectral-analysis, python, fortran, gravity-field, magnetic-field, topography, slepian-functions]",91,7,85,104,56,644,733,1709696957,88,164681991 10.5281/zenodo.20636,,1,software,,7,,,,,,,,7,36,7,7,36,38,292180,38,292180 10.5281/zenodo.20653,,1,dataset,,3,,,,,,,,3,18,3,3,18,19,8787681,19,8787681 10.5281/zenodo.20655,,1,dataset,,2,,,,,,,,1,10,2,1,10,10,2950723,10,2950723 10.5281/zenodo.206619,10.5281/zenodo.597578,1,software,https://github.com/statbio/Sargasso,7,2,"{""Python"": 99148, ""Shell"": 24994}",MIT License,4,4,"[bioinformatics, high-throughput-sequencing, rna-seq, chip-seq, atac-seq]",4,4,1169,44,13,1194,1232,997047856,1198,150487939 10.5281/zenodo.20684,,1,software,https://github.com/RBVI/CyAnimator,0,3,"{""Java"": 257055}",,4,6,[],4,0,6,0,0,6,6,0,6,0 10.5281/zenodo.207036,,1,publication,,0,,,,,,,,0,8,0,0,8,8,0,8,0 10.5281/zenodo.207260,,1,publication,,7,,,,,,,,7,47,7,7,47,52,3867857,52,3867857 10.5281/zenodo.207471,,1,software,,21,,,,,,,,12,30,21,12,30,30,57085496,30,57085496 10.5281/zenodo.20766,,1,dataset,,19,,,,,,,,9,61,19,9,61,63,28229062839,63,28229062839 10.5281/zenodo.207679,,1,publication,,0,,,,,,,,0,2,0,0,2,2,0,2,0 10.5281/zenodo.20775,,1,software,https://github.com/fcproj/recommender,1,0,"{""Java"": 44676, ""Shell"": 234}",Creative Commons Attribution 4.0 International,0,1,[],0,1,14,1,1,14,14,424048,14,424048 10.5281/zenodo.20777,,1,software,https://github.com/fcproj/agrotagger,1,3,"{""Java"": 59009, ""Shell"": 32575, ""XSLT"": 1822, ""HTML"": 768}",,9,4,[],9,1,59,1,1,59,59,171287236,59,171287236 10.5281/zenodo.208123,,1,software,,2,,,,,,,,2,33,2,2,33,34,27560556,34,27560556 10.5281/zenodo.208130,,1,publication,,0,,,,,,,,0,4,0,0,4,4,0,4,0 10.5281/zenodo.208195,10.5281/zenodo.597540,1,software,https://github.com/lutsik/MeDeCom,1,10,"{""R"": 243874, ""C++"": 107737, ""C"": 5449}",,10,4,[],10,1,22,2,1,24,28,62200120,24,31540359 10.5281/zenodo.208214,,1,dataset,,138,,,,,,,,98,335,138,98,335,359,77254129129,359,77254129129 10.5281/zenodo.208230,,1,software,https://github.com/CorySimon/ForScientificReproducibility,4,2,"{""Jupyter Notebook"": 8848521, ""Julia"": 64972}",,0,1,[],0,4,44,4,4,44,44,7494616,44,7494616 10.5281/zenodo.208499,10.5281/zenodo.594746,1,software,https://github.com/guillaumelobet/Root-Image-Analysis-Pipeline-Evaluation,2,0,"{""Java"": 210493, ""R"": 66545}",,1,2,[],1,2,38,6,5,75,77,179169162,40,63078464 10.5281/zenodo.208938,,1,publication,,,,,,,,,,,,,,,,,, 10.5281/zenodo.208960,,1,publication,,0,,,,,,,,0,47,0,0,47,48,0,48,0 10.5281/zenodo.208970,,1,publication,,0,,,,,,,,0,5,0,0,5,5,0,5,0 10.5281/zenodo.209701,,1,publication,,0,,,,,,,,0,19,0,0,19,19,0,19,0 10.5281/zenodo.21001,,1,publication,,28,,,,,,,,27,102,28,27,102,102,258135332,102,258135332 10.5281/zenodo.210142,,1,publication,,,,,,,,,,,,,,,,,, 10.5281/zenodo.2101939,10.5281/zenodo.2101938,1,software,,2,,,,,,,,2,18,2,2,18,21,8018574,21,8018574 10.5281/zenodo.210631,10.5281/zenodo.596795,1,software,https://github.com/FilteredPush/event_date_qc,0,0,"{""Java"": 416219}",Apache License 2.0,2,3,[],2,0,4,0,0,4,4,0,4,0 10.5281/zenodo.211012,,1,publication,,0,,,,,,,,0,3,0,0,3,3,0,3,0 10.5281/zenodo.21144,,1,dataset,https://github.com/yeronimo/Easement_cost-effectiveness,1,0,"{""R"": 66317}",GNU General Public License v3.0,0,1,[],0,1,11,1,1,11,11,5002801,11,5002801 10.5281/zenodo.211446,,1,publication,,0,,,,,,,,0,11,0,0,11,11,0,11,0 10.5281/zenodo.21145,,1,software,,1,,,,,,,,1,33,1,1,33,33,75168,33,75168 10.5281/zenodo.21157,,1,software,,1,,,,,,,,1,46,1,1,46,46,1161247,46,1161247 10.5281/zenodo.211828,10.5281/zenodo.592406,1,software,https://github.com/Axelrod-Python/Axelrod,6,138,"{""Python"": 1326560, ""Shell"": 82}",Other,404,24,"[python, game-theory, reproducible-research, mathematics, computer-science]",404,5,6,375,19,386,468,237284079,7,3918216 10.5281/zenodo.212115,,1,software,,0,,,,,,,,0,14,0,0,14,14,0,14,0 10.5281/zenodo.212178,10.5281/zenodo.597652,1,software,https://github.com/adrienBizeray/Spectral_li-ion_SPM,30,6,"{""MATLAB"": 63035}",Other,12,9,[],12,27,186,33,27,189,218,30035358,206,27304920 10.5281/zenodo.212640,,1,publication,,0,,,,,,,,0,2,0,0,2,2,0,2,0 10.5281/zenodo.212837,,1,publication,,0,,,,,,,,0,3,0,0,3,3,0,3,0 10.5281/zenodo.213148,,1,software,,7,,,,,,,,3,18,7,3,18,19,140501487,19,140501487 10.5281/zenodo.213150,,1,publication,,0,,,,,,,,0,2,0,0,2,2,0,2,0 10.5281/zenodo.213308,,1,software,https://github.com/scienceopen/AIDA-tools,1,0,"{""HTML"": 6473041, ""MATLAB"": 1785711, ""PostScript"": 496469, ""GAP"": 63799, ""M"": 9495, ""TeX"": 8134, ""Java"": 5666, ""CSS"": 2100, ""Shell"": 2014, ""Mathematica"": 781}",GNU General Public License v3.0,0,3,"[aurora, tomography]",0,1,7,1,1,7,7,49387884,7,49387884 10.5281/zenodo.213859,,1,publication,,0,,,,,,,,0,21,0,0,21,22,0,22,0 10.5281/zenodo.21386,,1,software,,4,,,,,,,,4,36,4,4,36,37,294928,37,294928 10.5281/zenodo.21406,,1,publication,,4,,,,,,,,4,32,4,4,32,32,129308,32,129308 10.5281/zenodo.21407,,1,publication,,20,,,,,,,,18,20,20,18,20,20,471280,20,471280 10.5281/zenodo.21408,,1,publication,,18,,,,,,,,18,25,18,18,25,25,564012,25,564012 10.5281/zenodo.21409,,1,publication,,6,,,,,,,,6,11,6,6,11,11,197610,11,197610 10.5281/zenodo.21410,,1,publication,,6,,,,,,,,6,14,6,6,14,14,159450,14,159450 10.5281/zenodo.21411,,1,publication,,8,,,,,,,,8,62,8,8,62,62,229288,62,229288 10.5281/zenodo.21415,,1,publication,,15,,,,,,,,15,28,15,15,28,28,12233940,28,12233940 10.5281/zenodo.21445,10.5281/zenodo.591490,1,software,https://github.com/SasView/sasview,0,20,"{""Python"": 3739008, 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ontology, rephetio, annotations]",2,3,74,3,3,74,78,326183676,78,326183676 10.5281/zenodo.218277,10.5281/zenodo.597920,1,software,https://github.com/molbiodiv/biojs-io-biom,0,1,"{""JavaScript"": 3524852, ""HTML"": 3129}",MIT License,2,5,"[biom-format, bioinformatics, biojs]",2,0,33,0,0,67,93,0,34,0 10.5281/zenodo.218396,10.5281/zenodo.597903,1,software,https://github.com/molbiodiv/biom-conversion-server,0,0,"{""PHP"": 7931, ""HTML"": 4326, ""Dockerfile"": 1348, ""Shell"": 77}",MIT License,1,1,"[biom-format, bioinformatics]",1,0,22,0,0,51,76,0,23,0 10.5281/zenodo.218417,,1,publication,,12,,,,,,,,11,161,12,11,161,165,9010308,165,9010308 10.5281/zenodo.220867,10.5281/zenodo.595241,1,software,https://github.com/qutip/qutip,2,263,"{""Python"": 2799237, ""C++"": 21391, ""TeX"": 810}",Other,668,69,"[qutip, python, quantum-toolbox, quantum, quantum-computing, quantum-mechanics, quantum-information, quantum-optics]",668,1,56,15,4,131,138,9712208,58,1317792 10.5281/zenodo.220877,,1,software,,0,,,,,,,,0,26,0,0,26,26,0,26,0 10.5281/zenodo.220948,,1,publication,,11,,,,,,,,11,50,11,11,50,59,8957245,59,8957245 10.5281/zenodo.220990,,1,software,https://github.com/datalimited/datalimited,4,6,"{""R"": 134389, ""C++"": 12299}",,2,6,[],2,4,15,4,4,15,18,57300432,18,57300432 10.5281/zenodo.220991,,1,software,https://github.com/datalimited/ensembles,5,1,"{""R"": 68325, ""Makefile"": 36}",,1,3,[],1,4,6,5,4,6,6,232938460,6,232938460 10.5281/zenodo.220992,,1,dataset,,36,,,,,,,,36,47,36,36,47,48,27606220,48,27606220 10.5281/zenodo.220994,10.5281/zenodo.595748,1,software,https://github.com/girke-lab/targetSelectivity,2,0,"{""R"": 200581, ""Makefile"": 8705, ""Python"": 2672, ""Shell"": 438}",Other,2,3,[],2,2,44,2,2,46,46,2017922,44,2017922 10.5281/zenodo.221189,,1,software,https://github.com/sha17hab/Flood-Inundation-Mapping-and-Comparison-of-Two-Models,5,0,"{""R"": 23375}",GNU General Public License v3.0,0,1,[],0,5,66,5,5,66,72,103505,72,103505 10.5281/zenodo.2216356,10.5281/zenodo.2216355,1,software,,1,,,,,,,,1,14,1,1,14,24,1725286,24,1725286 10.5281/zenodo.2217028,10.5281/zenodo.2217027,1,software,,1,,,,,,,,1,15,1,1,15,17,113234,17,113234 10.5281/zenodo.22193,10.5281/zenodo.591717,1,dataset,,0,,,,,,,,0,27,0,0,68,70,0,27,0 10.5281/zenodo.22206,,1,dataset,,3,,,,,,,,2,67,3,2,67,70,4280,70,4280 10.5281/zenodo.2222641,10.5281/zenodo.2222640,1,software,https://github.com/spatialdatahub/spatialdatahub.org,3,1,"{""Python"": 100269, ""HTML"": 32536, ""Shell"": 2842}",MIT License,0,1,[],0,3,28,3,3,28,29,228267,29,228267 10.5281/zenodo.2222698,10.5281/zenodo.2222697,1,software,https://github.com/spatialdatahub/spatialdatahub.org-static,3,1,"{""JavaScript"": 168828, ""CSS"": 80507}",MIT License,0,1,[],0,3,17,3,3,17,18,2129070,18,2129070 10.5281/zenodo.222615,10.5281/zenodo.600531,1,dataset,,84,,,,,,,,61,99,84,61,99,104,17248480986,104,17248480986 10.5281/zenodo.22304,,1,dataset,,953,,,,,,,,50,393,953,50,393,420,5224619456,420,5224619456 10.5281/zenodo.223099,,1,software,,16,,,,,,,,12,23,16,12,23,24,49885,24,49885 10.5281/zenodo.2232367,10.5281/zenodo.2232367,1,image,,1,,,,,,,,1,21,1,1,21,24,324307601,24,324307601 10.5281/zenodo.223329,,1,publication,,2,,,,,,,,2,22,2,2,22,23,142336,23,142336 10.5281/zenodo.22387,,1,publication,,198,,,,,,,,170,553,198,170,553,588,188536590,588,188536590 10.5281/zenodo.22390,,1,publication,,78,,,,,,,,71,226,78,71,226,234,51248652,234,51248652 10.5281/zenodo.223934,,1,dataset,,2,,,,,,,,2,25,2,2,25,26,8761306,26,8761306 10.5281/zenodo.22398,10.5281/zenodo.592317,1,software,,18,,,,,,,,18,191,18,18,261,278,63744624,199,63744624 10.5281/zenodo.224242,,1,software,,17,,,,,,,,17,4,17,17,4,5,110041,5,110041 10.5281/zenodo.224251,,1,software,,2,,,,,,,,1,6,2,1,6,6,10905,6,10905 10.5281/zenodo.224317,,1,software,https://github.com/reisnerv/ResponseOnsetTool,4,0,"{""MATLAB"": 5651}",Other,0,0,[],0,4,38,4,4,38,39,21048,39,21048 10.5281/zenodo.22446,,1,publication,,15,,,,,,,,11,8,15,11,8,8,7298640,8,7298640 10.5281/zenodo.226630,,1,software,https://github.com/brack123/Viral_Cluster_Processing-scripts.v.1,0,0,{},,0,1,[],0,0,19,0,0,19,20,0,20,0 10.5281/zenodo.227105,,1,dataset,,17,,,,,,,,12,28,17,12,28,44,223309228,44,223309228 10.5281/zenodo.2273326,10.5281/zenodo.2273325,1,software,https://github.com/BlackCat07/F90_GMRES-SDC,2,0,"{""Fortran"": 21433}",,0,0,[],0,2,23,4,3,25,59,29076,50,13942 10.5281/zenodo.228000,,1,dataset,,3,,,,,,,,3,29,3,3,29,29,291313959,29,291313959 10.5281/zenodo.22816,,1,software,,1,,,,,,,,1,12,1,1,12,12,24914203,12,24914203 10.5281/zenodo.228164,,1,publication,,50,,,,,,,,49,35,50,49,35,35,230712600,35,230712600 10.5281/zenodo.229138,,1,dataset,,26,,,,,,,,25,7,26,25,7,7,25248963,7,25248963 10.5281/zenodo.22968,,1,software,,0,,,,,,,,0,11,0,0,11,11,0,11,0 10.5281/zenodo.229910,,1,software,https://github.com/schmelling/reciprocal_BLAST,1,4,"{""Jupyter Notebook"": 260755, ""Shell"": 1180, ""Python"": 514}",,2,2,[],2,1,34,1,1,34,34,126971,34,126971 10.5281/zenodo.22994,,1,publication,,10,,,,,,,,9,8,10,9,8,8,3813940,8,3813940 10.5281/zenodo.230256,10.5281/zenodo.598094,1,software,https://github.com/SLACKHA/accelerInt,0,2,"{""Cuda"": 183418, ""C"": 144786, ""Python"": 80505, ""C++"": 16646, ""Shell"": 3317}",MIT License,4,4,[],4,0,4,0,0,10,11,0,4,0 10.5281/zenodo.230356,10.5281/zenodo.597135,1,software,https://github.com/csadorf/signac,3,1,"{""Python"": 673188, ""Shell"": 6879, ""TeX"": 938}","BSD 3-Clause ""New"" or ""Revised"" License",2,1,[],2,2,22,17,5,126,160,12335035,25,1137480 10.5281/zenodo.230363,,1,software,,28,,,,,,,,24,43,28,24,43,43,20244567,43,20244567 10.5281/zenodo.230489,10.5281/zenodo.597441,1,software,https://github.com/jensv/fluxtubestability,1,0,"{""Python"": 221970, ""Shell"": 244}",MIT License,0,1,[],0,1,27,1,1,31,34,46573,30,46573 10.5281/zenodo.231087,,1,publication,,6,,,,,,,,6,3,6,6,3,3,572370,3,572370 10.5281/zenodo.231284,,1,software,https://github.com/llambourne/isoenzymes_flux_balance,0,0,"{""Jupyter Notebook"": 8974746, ""Python"": 37735}",MIT License,0,1,"[yeast, bioinformatics, biology]",0,0,12,0,0,12,12,0,12,0 10.5281/zenodo.231329,,1,software,https://github.com/pyGSTio/supplemental-info-arXiv-1605.07674,12,1,"{""Jupyter Notebook"": 2384398, ""Python"": 2203}",,2,1,[],2,12,69,12,12,69,72,89750016,72,89750016 10.5281/zenodo.23153,,1,publication,,7,,,,,,,,7,17,7,7,17,17,831194,17,831194 10.5281/zenodo.232218,,1,dataset,,7,,,,,,,,7,48,7,7,48,48,13125260491,48,13125260491 10.5281/zenodo.23401,,1,publication,,7,,,,,,,,7,17,7,7,17,17,4456193,17,4456193 10.5281/zenodo.23417,,1,publication,,36,,,,,,,,32,106,36,32,106,109,51939252,109,51939252 10.5281/zenodo.23427,,1,publication,,11,,,,,,,,10,18,11,10,18,19,42052494,19,42052494 10.5281/zenodo.235071,10.5281/zenodo.595535,1,software,https://github.com/dit/dit,1,44,"{""Python"": 1275659, ""TeX"": 6951, ""C"": 5938, ""PHP"": 614, ""HTML"": 265, ""Shell"": 180}","BSD 3-Clause ""New"" or ""Revised"" License",205,19,"[python, information-theory]",205,1,21,18,6,80,93,25329998,25,1317959 10.5281/zenodo.235247,,1,dataset,,0,,,,,,,,0,8,0,0,8,8,0,8,0 10.5281/zenodo.23553,,1,publication,,7,,,,,,,,7,8,7,7,8,8,3950849,8,3950849 10.5281/zenodo.23559,,1,publication,,6,,,,,,,,6,6,6,6,6,6,5389002,6,5389002 10.5281/zenodo.235595,,1,software,https://github.com/GNilsonne/SleepyBrain-StimulusPresentation,3,1,"{""Scilab"": 66135}",Creative Commons Zero v1.0 Universal,0,2,[],0,3,25,3,3,25,27,330435,27,330435 10.5281/zenodo.23595,,1,publication,,11,,,,,,,,10,20,11,10,20,20,43139404,20,43139404 10.5281/zenodo.23616,,1,publication,,5,,,,,,,,5,8,5,5,8,8,8378420,8,8378420 10.5281/zenodo.23624,,1,publication,,8,,,,,,,,8,11,8,8,11,11,90764136,11,90764136 10.5281/zenodo.23628,,1,publication,,6,,,,,,,,6,5,6,6,5,5,5835822,5,5835822 10.5281/zenodo.236468,,1,dataset,https://github.com/briandconnelly/resource-biofilm,0,0,"{""R"": 24495}",Other,0,1,"[avida, biology, biological-simulations, evolution]",0,0,8,0,0,8,8,0,8,0 10.5281/zenodo.23652,,1,publication,,5,,,,,,,,5,9,5,5,9,9,42947645,9,42947645 10.5281/zenodo.2366251,10.5281/zenodo.2366251,1,software,https://github.com/emilyjunkins/PicoML,2,0,{},,1,0,[],1,1,25,2,1,25,27,20736,27,20736 10.5281/zenodo.23678,,1,publication,,9,,,,,,,,9,16,9,9,16,16,135292509,16,135292509 10.5281/zenodo.23680,,1,publication,,10,,,,,,,,10,6,10,10,6,6,102620950,6,102620950 10.5281/zenodo.23683,,1,publication,,7,,,,,,,,7,11,7,7,11,11,6593132,11,6593132 10.5281/zenodo.23684,,1,publication,,10,,,,,,,,10,10,10,10,10,10,6713020,10,6713020 10.5281/zenodo.23692,,1,publication,,11,,,,,,,,10,9,11,10,9,10,37070066,10,37070066 10.5281/zenodo.23696,,1,publication,,8,,,,,,,,7,9,8,7,9,9,27995312,9,27995312 10.5281/zenodo.23698,,1,publication,,7,,,,,,,,7,15,7,7,15,15,42884499,15,42884499 10.5281/zenodo.237040,,1,software,https://github.com/benchoufi/DocChain,6,3,"{""JavaScript"": 69502, ""HTML"": 33820, ""CSS"": 1297}","BSD 3-Clause ""New"" or ""Revised"" License",1,3,[],1,6,85,6,6,85,91,287022,91,287022 10.5281/zenodo.23706,,1,publication,,11,,,,,,,,10,18,11,10,18,18,22549890,18,22549890 10.5281/zenodo.237068,,1,image,https://github.com/Paquicf/LULCMAP-MarMenor_Watershed,0,0,"{""QML"": 1658}",,2,2,[],2,0,16,0,0,16,19,0,19,0 10.5281/zenodo.23709,,1,publication,,4,,,,,,,,4,8,4,4,8,8,14443092,8,14443092 10.5281/zenodo.237107,10.5281/zenodo.597763,1,software,https://github.com/tkralphs/DisCO,0,1,"{""C++"": 352528, ""Shell"": 232623, ""Makefile"": 107112, ""M4"": 10801, ""C"": 1633}",Eclipse Public License 1.0,1,3,[],1,0,6,2,1,21,23,7943090,6,0 10.5281/zenodo.23716,,1,publication,,12,,,,,,,,12,11,12,12,11,11,23805120,11,23805120 10.5281/zenodo.23722,,1,publication,,18,,,,,,,,17,32,18,17,32,33,189078984,33,189078984 10.5281/zenodo.23723,,1,publication,,23,,,,,,,,22,51,23,22,51,55,12875676,55,12875676 10.5281/zenodo.237369,10.5281/zenodo.598344,1,software,https://github.com/NIMBioS-NetworkCode/MigrationNetwork,5,0,"{""R"": 56330}",GNU General Public License v3.0,0,1,[],0,5,55,6,6,61,74,3387208,67,2653340 10.5281/zenodo.237456,10.5281/zenodo.598333,1,software,https://github.com/coin-or/SYMPHONY,0,2,"{""C"": 3811130, ""Makefile"": 1330112, ""TeX"": 528386, ""Shell"": 472660, ""C++"": 200025, ""Tcl"": 196704, ""M4"": 37140, ""Roff"": 34105, ""PostScript"": 22855, ""Python"": 18958, ""HTML"": 16423, ""GAP"": 3512, ""Awk"": 3476, ""AMPL"": 738}",Eclipse Public License 1.0,6,2,[],6,0,1,9,6,94,104,20016306,1,0 10.5281/zenodo.23748,,1,publication,,16,,,,,,,,12,18,16,12,18,20,46198816,20,46198816 10.5281/zenodo.23750,,1,publication,,13,,,,,,,,9,8,13,9,8,8,34365669,8,34365669 10.5281/zenodo.23752,,1,publication,,5,,,,,,,,5,7,5,5,7,7,2505890,7,2505890 10.5281/zenodo.23754,,1,publication,,26,,,,,,,,25,7,26,25,7,7,84091254,7,84091254 10.5281/zenodo.237579,,1,software,https://github.com/joyeuxnoel8/GAME,0,1,"{""Python"": 191014, ""C++"": 7531, ""Makefile"": 309}",GNU General Public License v3.0,0,1,[],0,0,14,0,0,14,14,0,14,0 10.5281/zenodo.23758,,1,publication,,9,,,,,,,,9,9,9,9,9,9,18989064,9,18989064 10.5281/zenodo.237643,10.5281/zenodo.596621,1,software,https://github.com/mirams/PyHillFit,5,0,"{""Python"": 127127, ""C++"": 22389, ""MATLAB"": 13290}","BSD 3-Clause ""New"" or ""Revised"" License",5,4,[],5,5,46,6,6,145,151,64487009,46,53954090 10.5281/zenodo.23772,,1,publication,,4,,,,,,,,4,7,4,4,7,7,6546384,7,6546384 10.5281/zenodo.23773,,1,publication,,4,,,,,,,,4,8,4,4,8,9,4886468,9,4886468 10.5281/zenodo.23774,,1,publication,,6,,,,,,,,6,7,6,6,7,7,14460084,7,14460084 10.5281/zenodo.23791,,1,publication,,11,,,,,,,,10,19,11,10,19,19,12857361,19,12857361 10.5281/zenodo.23803,,1,publication,,4,,,,,,,,4,8,4,4,8,8,11453048,8,11453048 10.5281/zenodo.23833,,1,publication,,16,,,,,,,,15,12,16,15,12,12,15766064,12,15766064 10.5281/zenodo.23836,,1,publication,,18,,,,,,,,17,9,18,17,9,10,44637732,10,44637732 10.5281/zenodo.23851,,1,publication,,30,,,,,,,,25,8,30,25,8,8,144081360,8,144081360 10.5281/zenodo.23852,,1,publication,,7,,,,,,,,7,19,7,7,19,19,107789612,19,107789612 10.5281/zenodo.23859,,1,publication,,4,,,,,,,,4,5,4,4,5,5,7086960,5,7086960 10.5281/zenodo.238761,,1,software,,8,,,,,,,,8,62,8,8,62,70,363020760,70,363020760 10.5281/zenodo.239084,,1,dataset,,21,,,,,,,,15,58,21,15,58,60,9486229315,60,9486229315 10.5281/zenodo.23920,,1,publication,,7,,,,,,,,7,11,7,7,11,11,28512813,11,28512813 10.5281/zenodo.2393424,10.5281/zenodo.2393423,1,software,https://github.com/BlackCat07/Py_Boris-GMRES-SDC,1,0,"{""Python"": 56685}",,0,0,[],0,1,20,3,2,22,38,56288,34,18796 10.5281/zenodo.2399865,10.5281/zenodo.2399864,1,software,,7,,,,,,,,6,83,7,6,83,88,76629042,88,76629042 10.5281/zenodo.24043,,1,publication,,7,,,,,,,,7,7,7,7,7,7,14415513,7,14415513 10.5281/zenodo.241217,,1,software,https://github.com/schymans/Schymanski_experimental_2016,16,0,"{""Jupyter Notebook"": 4319331, ""Python"": 240609}",GNU General Public License v3.0,0,1,[],0,3,13,16,3,13,17,99061968,17,99061968 10.5281/zenodo.241259,,1,software,https://github.com/schymans/Schymanski_leaf-scale_2016,2,0,"{""Jupyter Notebook"": 2807069, ""Python"": 186780}",GNU General Public License v3.0,1,2,[],1,2,64,2,2,64,71,3715416,71,3715416 10.5281/zenodo.2413854,10.5281/zenodo.2413853,1,software,https://github.com/jl-wynen/isle,1,0,"{""C++"": 677747, ""Python"": 370024, ""CMake"": 13475}",MIT License,0,4,"[lattice, monte-carlo, monte-carlo-simulation, hybrid-monte-carlo, hubbard-model, nanotubes, fullerene]",0,1,8,4,4,12,16,1205488,11,281722 10.5281/zenodo.242029,10.5281/zenodo.594200,1,software,https://github.com/tum-ens/urbs,3,57,"{""Python"": 176545}",GNU General Public License v3.0,64,18,"[python, pyomo, pandas, optimisation-model, mathematical-modelling, linear-programming, energy-system]",64,3,23,22,20,360,395,148871487,26,31147890 10.5281/zenodo.242377,10.5281/zenodo.592244,1,software,https://github.com/AIDASoft/DD4hep,2,44,"{""C++"": 5113527, ""CMake"": 212454, ""Python"": 192071, ""C"": 76709, ""Shell"": 38545, ""Objective-C"": 8017, ""Emacs Lisp"": 373}",Other,23,14,[],23,1,11,71,8,184,221,1446447214,11,39733992 10.5281/zenodo.242387,10.5281/zenodo.593252,1,software,https://github.com/hertzsprung/gmv2openfoam,0,0,"{""C"": 181616, ""Python"": 4007, ""Makefile"": 599, ""Shell"": 167}",MIT License,0,0,[],0,0,8,0,0,11,11,0,8,0 10.5281/zenodo.242498,,1,dataset,,16,,,,,,,,5,42,16,5,42,44,317378,44,317378 10.5281/zenodo.242550,10.5281/zenodo.598932,1,publication,,1503,,,,,,,,1116,378,1503,1116,378,408,3096425974,408,3096425974 10.5281/zenodo.242976,10.5281/zenodo.592568,1,software,https://github.com/jimmyodonnell/Carkeek_eDNA_grid,2,0,"{""TeX"": 965694, ""R"": 115670, ""Shell"": 408}",,3,2,[],3,2,41,2,2,46,51,25252716,44,25252716 10.5281/zenodo.24301,,1,publication,,9,,,,,,,,9,10,9,9,10,10,49252059,10,49252059 10.5281/zenodo.243155,,1,software,https://github.com/pcheng27/SAXS-ER,0,0,"{""HTML"": 9453, ""CSS"": 1385}",,1,1,[],1,0,76,0,0,76,81,0,81,0 10.5281/zenodo.24358,,1,publication,,37,,,,,,,,33,64,37,33,64,70,363262152,70,363262152 10.5281/zenodo.24517,,1,publication,,5,,,,,,,,5,5,5,5,5,5,6383170,5,6383170 10.5281/zenodo.24529,,1,publication,,6,,,,,,,,6,6,6,6,6,6,83788842,6,83788842 10.5281/zenodo.245327,10.5281/zenodo.593262,1,software,https://github.com/AtmosFOAM/gmd-geodesic-mesh,0,0,"{""Fortran"": 275352, ""MATLAB"": 9156, ""Shell"": 1311, ""Makefile"": 447, ""Gnuplot"": 243}",,2,3,[],2,0,0,4,4,6,6,515704,0,0 10.5281/zenodo.24553,,1,publication,,4,,,,,,,,4,7,4,4,7,7,1508416,7,1508416 10.5281/zenodo.245652,10.5281/zenodo.597740,1,software,https://github.com/coin-or/CHiPPS-BiCePS,2,3,"{""Shell"": 465246, ""C++"": 464289, ""Makefile"": 136239, ""C"": 17950, ""M4"": 15750}",Other,4,5,[],4,1,12,13,6,37,37,9951598,12,1528806 10.5281/zenodo.245971,10.5281/zenodo.597735,1,software,https://github.com/coin-or/CHiPPS-ALPS,3,4,"{""C++"": 876856, ""Shell"": 465246, ""Makefile"": 142554, ""C"": 34571, ""M4"": 15779, ""Awk"": 1434, ""AMPL"": 267}",Other,2,5,[],2,2,13,11,6,51,53,11005518,13,2988372 10.5281/zenodo.246079,10.5281/zenodo.597745,1,software,https://github.com/coin-or/CHiPPS-BLIS,1,2,"{""C++"": 657643, ""Shell"": 465246, ""Makefile"": 133489, ""C"": 21523, ""M4"": 12928, ""Awk"": 1082}",Other,1,5,[],1,1,20,12,6,29,30,51119841,21,4253882 10.5281/zenodo.246087,10.5281/zenodo.597762,1,software,https://github.com/coin-or/Dip,1,1,"{""C++"": 2375166, ""Shell"": 539456, ""Makefile"": 273656, ""Python"": 185055, ""TeX"": 138209, ""PostScript"": 80837, ""C"": 21258, ""M4"": 19873, ""MATLAB"": 6897, ""Awk"": 6032, ""Objective-C"": 6025, ""Perl"": 3008, ""HTML"": 1010}",Eclipse Public License 1.0,1,1,[],1,1,53,1,1,57,58,4831739,54,4831739 10.5281/zenodo.24614,,1,publication,,8,,,,,,,,8,12,8,8,12,13,47255160,13,47255160 10.5281/zenodo.247327,10.5281/zenodo.593780,1,software,https://github.com/AtmosFOAM/AtmosFOAM,0,5,"{""C++"": 543716, ""C"": 299846, ""Python"": 40452, ""Shell"": 37309, ""Objective-C"": 2472, ""Makefile"": 2302, ""Gnuplot"": 1391}",GNU General Public License v3.0,7,6,[],7,0,33,0,0,37,42,0,34,0 10.5281/zenodo.247480,10.5281/zenodo.593737,1,software,https://github.com/hertzsprung/AtmosTests,0,1,"{""C++"": 99829, ""Python"": 97743, ""Shell"": 14795}",MIT License,0,0,[],0,0,3,0,0,3,3,0,3,0 10.5281/zenodo.247547,,1,software,https://github.com/DiamondLightSource/SuRVoS,0,1,"{""Cuda"": 1792971, ""Python"": 459347, ""C"": 2135, ""C++"": 1352, ""CMake"": 769, ""Batchfile"": 481, ""Shell"": 380, ""Makefile"": 328}",Apache License 2.0,12,15,[],12,0,18,0,0,18,19,0,19,0 10.5281/zenodo.24794,,1,publication,,4,,,,,,,,4,6,4,4,6,6,2629188,6,2629188 10.5281/zenodo.24856,,1,publication,,4,,,,,,,,4,9,4,4,9,9,774656,9,774656 10.5281/zenodo.24858,,1,publication,,9,,,,,,,,9,8,9,9,8,8,1508841,8,1508841 10.5281/zenodo.248966,10.5281/zenodo.597316,1,software,https://github.com/rinde/evo4mas,0,1,"{""Java"": 107081, ""Shell"": 3508, ""R"": 2178}",,2,2,[],2,0,1,0,0,2,3,0,1,0 10.5281/zenodo.248977,,1,dataset,,0,,,,,,,,0,22,0,0,22,22,0,22,0 10.5281/zenodo.24902,,1,publication,,11,,,,,,,,10,13,11,10,13,14,8614320,14,8614320 10.5281/zenodo.2500762,10.5281/zenodo.839417,1,software,https://github.com/kpeeters/cadabra2,4,24,"{""C"": 7853761, ""C++"": 3634519, ""CMake"": 498783, ""CSS"": 409823, ""HTML"": 276760, ""TeX"": 72455, ""Python"": 46560, ""Shell"": 8947, ""Objective-C++"": 5115, ""Mathematica"": 4404, ""Inno Setup"": 2206, ""Makefile"": 2038, ""Objective-C"": 1822, ""Batchfile"": 990, ""Rich Text Format"": 587}",GNU General Public License v3.0,72,14,"[computer-algebra, mathematics, tensors, physics, science-research, cplusplus, python3, symbolic-manipulation, cadabra2]",72,4,93,37,22,145,167,629107351,102,108642576 10.5281/zenodo.250362,,1,dataset,,1,,,,,,,,1,31,1,1,31,32,1032842262,32,1032842262 10.5281/zenodo.250466,,1,software,,0,,,,,,,,0,12,0,0,12,12,0,12,0 10.5281/zenodo.250558,,1,software,,7,,,,,,,,6,65,7,6,65,67,7655803449,67,7655803449 10.5281/zenodo.250931,10.5281/zenodo.596734,1,software,https://github.com/justinshaffer/Endohyphal_bacterium_alters_substrate_use_by_Fusarium_keratoplasticum,0,0,{},,0,1,[],0,0,13,0,0,15,15,0,13,0 10.5281/zenodo.251069,,1,dataset,,32,,,,,,,,14,59,32,14,59,62,993920672,62,993920672 10.5281/zenodo.251144,10.5281/zenodo.598088,1,software,https://github.com/SLACKHA/pyJac,3,14,"{""Python"": 495939, ""Cuda"": 10026, ""C"": 6869}",MIT License,16,10,[],16,3,40,6,5,71,82,1759062,41,871875 10.5281/zenodo.251456,,1,software,https://github.com/jellis18/PAL2,0,3,"{""Python"": 834610}",,5,3,[],5,0,22,0,0,22,23,0,23,0 10.5281/zenodo.25148,,1,publication,,6,,,,,,,,6,15,6,6,15,15,5784942,15,5784942 10.5281/zenodo.25274,,1,publication,,5,,,,,,,,5,26,5,5,26,26,48328635,26,48328635 10.5281/zenodo.2535418,10.5281/zenodo.2535417,1,dataset,,13,,,,,,,,7,42,13,7,42,46,255179490,46,255179490 10.5281/zenodo.253681,,1,dataset,,2,,,,,,,,2,21,2,2,21,23,40518932,23,40518932 10.5281/zenodo.2538153,10.5281/zenodo.593079,1,software,https://github.com/amkozlov/raxml-ng,12,19,"{""C++"": 456673, ""CMake"": 11505, ""C"": 65}",GNU Affero General Public License v3.0,100,15,"[bioinformatics, phylogenetics, maximum-likelihood, mpi, pthreads]",100,7,7,60,20,308,350,7290156,7,1727856 10.5281/zenodo.253942,10.5281/zenodo.595237,1,software,https://github.com/SELAB-AA/fragbinpacking-problems,2,0,{},Creative Commons Attribution 4.0 International,0,2,[],0,2,5,2,2,8,10,359110,6,359110 10.5281/zenodo.254090,,1,dataset,,10,,,,,,,,6,27,10,6,27,27,1956506584,27,1956506584 10.5281/zenodo.25459,,1,publication,,6,,,,,,,,6,34,6,6,34,35,4307010,35,4307010 10.5281/zenodo.25488,,1,publication,,10,,,,,,,,10,18,10,10,18,18,23757990,18,23757990 10.5281/zenodo.25495,,1,publication,,4,,,,,,,,4,9,4,4,9,9,1663744,9,1663744 10.5281/zenodo.25545,,1,publication,,6,,,,,,,,6,7,6,6,7,7,766548,7,766548 10.5281/zenodo.25565,,1,publication,,5,,,,,,,,5,4,5,5,4,4,6678660,4,6678660 10.5281/zenodo.255676,,1,software,https://github.com/SwissTPH/app-rural-geolocator,0,1,"{""Python"": 14477}",GNU General Public License v3.0,0,6,[],0,0,1,0,0,1,1,0,1,0 10.5281/zenodo.255699,10.5281/zenodo.744702,1,dataset,,106,,,,,,,,18,88,106,18,88,95,584603886,95,584603886 10.5281/zenodo.255882,10.5281/zenodo.744867,1,dataset,,32,,,,,,,,8,77,32,8,77,82,249073840,82,249073840 10.5281/zenodo.2559447,10.5281/zenodo.1164782,1,dataset,https://github.com/lessersunda/lexirumah-data,4,2,"{""Jupyter Notebook"": 1244653, ""Python"": 140992, ""TeX"": 61499}",,0,5,[],0,2,15,50,20,203,276,92559537,28,6358408 10.5281/zenodo.25597,,1,publication,,9,,,,,,,,9,10,9,9,10,10,23889321,10,23889321 10.5281/zenodo.25617,,1,publication,,8,,,,,,,,7,22,8,7,22,22,27559848,22,27559848 10.5281/zenodo.256329,,1,publication,,14,,,,,,,,13,121,14,13,121,124,42959720244,124,42959720244 10.5281/zenodo.256858,,1,software,https://github.com/CartwrightLab/WuEtAl2017,0,2,"{""R"": 90031, ""Python"": 16242, ""Shell"": 15611}",,0,2,[],0,0,1,0,0,1,1,0,1,0 10.5281/zenodo.257026,10.5281/zenodo.745633,1,dataset,,3517,,,,,,,,46,338,3517,46,338,368,18838529258,368,18838529258 10.5281/zenodo.257145,10.5281/zenodo.746294,1,dataset,,1044,,,,,,,,32,130,1044,32,130,180,1128525636,180,1128525636 10.5281/zenodo.2574616,10.5281/zenodo.894419,1,software,https://github.com/junzis/pyModeS,2,66,"{""Python"": 135737}",GNU General Public License v3.0,167,24,"[python, ads-b, mode-s, aircraft, tracking, ehs, adsb]",167,1,11,18,8,49,58,4144457,11,559926 10.5281/zenodo.257463,10.5281/zenodo.597363,1,software,https://github.com/SwissTPH/openhds-server,2,1,"{""Java"": 1615520, ""HTML"": 647348, ""AspectJ"": 62294, ""CSS"": 37826, ""JavaScript"": 26006}",Other,0,5,[],0,2,16,2,2,19,21,24643022,17,24643022 10.5281/zenodo.257650,10.5281/zenodo.747703,1,publication,,87,,,,,,,,77,181,87,77,181,199,6446787,199,6446787 10.5281/zenodo.258107,10.5281/zenodo.597187,1,software,https://github.com/SwissTPH/openhds-tablet,5,5,"{""Java"": 687320}",,0,6,[],0,5,13,14,7,23,27,82320966,14,29402140 10.5281/zenodo.258553,,1,software,https://github.com/sha17hab/At-A-Station-Hydraulic-Geometry-Relations-of-USGS-Station,0,1,"{""MATLAB"": 147794}",GNU General Public License v3.0,1,1,[],1,0,50,0,0,50,57,0,57,0 10.5281/zenodo.25859,,1,publication,,3,,,,,,,,3,16,3,3,16,16,6689088,16,6689088 10.5281/zenodo.25866,,1,publication,,7,,,,,,,,7,18,7,7,18,19,45913546,19,45913546 10.5281/zenodo.25890,,1,publication,,4,,,,,,,,4,16,4,4,16,16,30741372,16,30741372 10.5281/zenodo.25904,,1,publication,,5,,,,,,,,5,7,5,5,7,7,8938210,7,8938210 10.5281/zenodo.259432,,1,software,https://github.com/mdhurst1/RoBoCoP_CRN,1,0,"{""C++"": 225096, ""Python"": 133921, ""HTML"": 36400, ""Makefile"": 16410, ""CSS"": 10328, ""JavaScript"": 48}",GNU General Public License v3.0,0,2,[],0,1,12,1,1,12,12,15076943,12,15076943 10.5281/zenodo.259476,,1,software,,76,,,,,,,,42,285,76,42,285,293,69438681,293,69438681 10.5281/zenodo.259500,,1,software,https://github.com/kylemede/ExoSOFT,1,4,"{""Python"": 381302}",Other,7,1,[],7,1,9,1,1,9,10,285274,10,285274 10.5281/zenodo.259514,,1,software,https://github.com/sdey135/rtapylysis,0,0,"{""Python"": 62460}",MIT License,1,2,[],1,0,2,0,0,2,2,0,2,0 10.5281/zenodo.259519,,1,software,https://github.com/stajichlab/chytropsin,1,0,{},,0,4,[],0,1,16,1,1,16,17,663026,17,663026 10.5281/zenodo.259579,,1,software,https://github.com/ramalok/amplicon_processing,6,1,"{""Shell"": 10441}",,2,2,[],2,6,143,6,6,143,148,37248,148,37248 10.5281/zenodo.259624,10.5281/zenodo.595608,1,software,https://github.com/chartgerink/2016head,1,,,,,,,,1,13,2,1,28,32,8886453,13,4419585 10.5281/zenodo.259718,10.5281/zenodo.597330,1,software,https://github.com/rinde/RinECJ,0,0,"{""Java"": 39082}",,2,2,[],2,0,4,0,0,8,9,0,4,0 10.5281/zenodo.259741,,1,software,,0,,,,,,,,0,8,0,0,8,8,0,8,0 10.5281/zenodo.259774,,1,dataset,,6,,,,,,,,5,21,6,5,21,21,17834028889,21,17834028889 10.5281/zenodo.259997,,1,software,https://github.com/remi-daigle/BESTMPA,0,0,"{""HTML"": 1737195, ""R"": 40356}",,0,1,[],0,0,18,0,0,18,20,0,20,0 10.5281/zenodo.260114,,1,dataset,,12,,,,,,,,10,30,12,10,30,33,7576068,33,7576068 10.5281/zenodo.260120,,1,publication,,25,,,,,,,,4,57,25,4,57,64,44336640281,64,44336640281 10.5281/zenodo.260122,,1,publication,,146,,,,,,,,39,90,146,39,90,111,124695201481,111,124695201481 10.5281/zenodo.260130,,1,software,https://github.com/rinde/vanLon17-GPEM-code,0,2,"{""Java"": 103565, ""Shell"": 1319, ""R"": 335, ""Python"": 210}",Apache License 2.0,1,1,[],1,0,11,0,0,11,11,0,11,0 10.5281/zenodo.260135,,1,software,https://github.com/reichlab/activemonitr,1,0,"{""TeX"": 106195, ""R"": 75721, ""CSS"": 446}",GNU General Public License v2.0,0,3,[],0,1,33,1,1,33,33,77929611,33,77929611 10.5281/zenodo.260139,,1,software,https://github.com/jnkather/AngiogenicZone,2,0,"{""MATLAB"": 89452}",MIT License,0,1,[],0,2,8,2,2,8,8,76462,8,76462 10.5281/zenodo.260154,,1,dataset,,6,,,,,,,,5,9,6,5,9,9,2687605153,9,2687605153 10.5281/zenodo.260178,10.5281/zenodo.596150,1,software,https://github.com/neutrons/web_reflectivity,0,1,"{""Python"": 266200, ""HTML"": 47468, ""CSS"": 6167, ""Makefile"": 3097}",Apache License 2.0,0,4,"[reflectivity, interfaces, neutrons, data-analysis]",0,0,10,0,0,18,18,0,10,0 10.5281/zenodo.260398,,1,dataset,,12,,,,,,,,11,117,12,11,117,119,5501978184,119,5501978184 10.5281/zenodo.260444,,1,dataset,,1,,,,,,,,1,46,1,1,46,49,5368709120,49,5368709120 10.5281/zenodo.261743,,1,presentation,,20,,,,,,,,19,19,20,19,19,19,8183029,19,8183029 10.5281/zenodo.26215,,1,publication,,53,,,,,,,,44,88,53,44,88,93,238118188,93,238118188 10.5281/zenodo.26234,,1,publication,,8,,,,,,,,6,7,8,6,7,10,1144776,10,1144776 10.5281/zenodo.263295,,1,dataset,,6,,,,,,,,4,12,6,4,12,12,8634888,12,8634888 10.5281/zenodo.263297,,1,software,,1,,,,,,,,1,10,1,1,10,10,162707,10,162707 10.5281/zenodo.263976,,1,publication,,18,,,,,,,,16,56,18,16,56,57,9620784,57,9620784 10.5281/zenodo.264128,,1,dataset,,15299,,,,,,,,68,171,15299,68,171,189,85195771850,189,85195771850 10.5281/zenodo.2647615,10.5281/zenodo.605791,1,software,https://github.com/colour-science/colour,30,85,"{""Python"": 5883187, ""TeX"": 135568}",Other,706,62,"[color-science, color, colour-science, colour, python]",706,28,958,84,56,1967,2719,481176328,1157,35738100 10.5281/zenodo.265182,,1,publication,,2,,,,,,,,2,5,2,2,5,5,516746186,5,516746186 10.5281/zenodo.26630,,1,publication,,6,,,,,,,,5,14,6,5,14,15,10631190,15,10631190 10.5281/zenodo.266889,10.5281/zenodo.597892,1,dataset,https://github.com/dhlab-epfl/LinkedBooksMonographs,1,0,"{""Jupyter Notebook"": 134612}",MIT License,0,10,[],0,1,11,1,1,30,33,13572194,11,13572194 10.5281/zenodo.266920,,1,software,https://github.com/neurohackweek/kids_rsfMRI_motion,1,4,"{""Jupyter Notebook"": 1341018, ""Python"": 38190, ""R"": 3100, ""Shell"": 2322}",MIT License,1,14,[],1,1,11,1,1,11,11,202334599,11,202334599 10.5281/zenodo.267182,10.5281/zenodo.597219,1,software,https://github.com/mnavascues/DIYABCskylineplot,15,0,"{""R"": 161614, ""Shell"": 1676}",Other,0,1,[],0,14,85,15,14,85,93,1001205,92,1001205 10.5281/zenodo.26734,,1,publication,,5,,,,,,,,5,4,5,5,4,4,234884755,4,234884755 10.5281/zenodo.267916,,1,dataset,,19,,,,,,,,10,69,19,10,69,73,1236380418,73,1236380418 10.5281/zenodo.268045,,1,publication,,11,,,,,,,,11,28,11,11,28,30,8006559,30,8006559 10.5281/zenodo.268131,,1,dataset,,28,,,,,,,,8,802,28,8,802,852,6330042889,852,6330042889 10.5281/zenodo.26850,,1,publication,,12,,,,,,,,10,28,12,10,28,29,208765560,29,208765560 10.5281/zenodo.268568,,1,software,https://github.com/dhimmel/hetionet,9,21,"{""HTML"": 16105, ""Jupyter Notebook"": 5708, ""Shell"": 5669, ""Dockerfile"": 1429}",,61,12,"[hetionet, rephetio, network, neo4j, hetnet, drug-repurposing, data-integration]",61,8,92,9,8,92,96,1394346483,96,1394346483 10.5281/zenodo.268654,,1,software,https://github.com/dhimmel/learn,5,3,"{""Jupyter Notebook"": 10607839, ""Shell"": 581}",,0,2,"[rephetio, machine-learning, logistic-regression, edge-prediction, drug-repurposing]",0,5,45,5,5,45,45,68002095,45,68002095 10.5281/zenodo.268899,,1,dataset,,4,,,,,,,,4,47,4,4,47,47,165068,47,165068 10.5281/zenodo.268949,,1,publication,,19,,,,,,,,17,21,19,17,21,21,37957858,21,37957858 10.5281/zenodo.268989,,1,publication,,2,,,,,,,,2,29,2,2,29,30,206162,30,206162 10.5281/zenodo.269001,,1,software,https://github.com/aanikitin/seis-eikonal,6,0,"{""C"": 210262, ""CMake"": 12252, ""Fortran"": 10137, ""MATLAB"": 7862, ""Shell"": 2316}","BSD 3-Clause ""New"" or ""Revised"" License",1,1,[],1,6,33,6,6,33,36,465510,36,465510 10.5281/zenodo.269610,,1,software,https://github.com/BioMoDeL/aesop,3,0,"{""Python"": 191435, ""Shell"": 37}",GNU General Public License v3.0,2,2,[],2,3,48,3,3,48,52,5276895,52,5276895 10.5281/zenodo.269664,10.5281/zenodo.594121,1,software,https://github.com/lingfeiwang/lassopv,0,1,"{""R"": 8432}",GNU General Public License v3.0,0,2,"[lasso, p-value, linear-regression, variable-selection, feature-selection]",0,0,1,0,0,3,3,0,1,0 10.5281/zenodo.26968,,1,publication,,7,,,,,,,,7,7,7,7,7,7,26065886,7,26065886 10.5281/zenodo.26997,,1,publication,,3,,,,,,,,3,5,3,3,5,5,247287,5,247287 10.5281/zenodo.270035,,1,publication,,0,,,,,,,,0,37,0,0,37,41,0,41,0 10.5281/zenodo.27083,,1,publication,,15,,,,,,,,14,10,15,14,10,12,12973680,12,12973680 10.5281/zenodo.27096,,1,publication,,12,,,,,,,,12,15,12,12,15,15,19511748,15,19511748 10.5281/zenodo.27134,,1,publication,,7,,,,,,,,7,10,7,7,10,10,5637534,10,5637534 10.5281/zenodo.27167,,1,publication,,7,,,,,,,,7,9,7,7,9,10,6411209,10,6411209 10.5281/zenodo.27214,,1,dataset,,46,,,,,,,,31,167,46,31,167,170,2652014145,170,2652014145 10.5281/zenodo.27239,10.5281/zenodo.593867,1,software,https://github.com/c-h-david/rapid,0,14,"{""Fortran"": 453530, ""Shell"": 325164, ""Makefile"": 11280, ""Dockerfile"": 3724}",Other,40,10,[],40,0,43,18,13,179,239,1932148,50,0 10.5281/zenodo.27241,10.5281/zenodo.593867,1,software,https://github.com/c-h-david/rapid,1,14,"{""Fortran"": 453530, ""Shell"": 325164, ""Makefile"": 11280, ""Dockerfile"": 3724}",Other,40,10,[],40,1,30,18,13,179,239,1932148,32,26430 10.5281/zenodo.27243,10.5281/zenodo.593867,1,software,https://github.com/c-h-david/rapid,0,14,"{""Fortran"": 453530, ""Shell"": 325164, ""Makefile"": 11280, ""Dockerfile"": 3724}",Other,40,10,[],40,0,17,18,13,179,239,1932148,20,0 10.5281/zenodo.27244,,1,software,https://github.com/dhimmel/tissues,2,0,{},,1,2,"[tissues, genes, anatomy, rephetio, hetionet]",1,2,26,2,2,26,26,232460540,26,232460540 10.5281/zenodo.272609,,1,software,,0,,,,,,,,0,11,0,0,11,13,0,13,0 10.5281/zenodo.27353,,1,lesson,,0,,,,,,,,0,94,0,0,94,94,0,94,0 10.5281/zenodo.27360,10.5281/zenodo.595754,1,software,https://github.com/rinde/RinSim,1,42,"{""Java"": 2753390, ""R"": 5988, ""Shell"": 4013}",Other,76,21,"[java, rinsim, simulator, logistics, agents, optimization, logistics-simulator, operational-research]",76,1,14,13,12,133,153,39403927,14,4089084 10.5281/zenodo.27361,10.5281/zenodo.595808,1,software,https://github.com/rinde/RinLog,2,6,"{""Java"": 484031, ""R"": 1437}",Other,6,2,[],6,2,13,3,3,36,37,426862,13,285476 10.5281/zenodo.27362,10.5281/zenodo.595889,1,software,https://github.com/rinde/pdptw-dataset-generator,1,4,"{""Java"": 52195}",Other,5,2,[],5,1,23,3,3,41,45,125373,26,40665 10.5281/zenodo.27364,,1,dataset,,4,,,,,,,,3,17,4,3,17,19,761113460,19,761113460 10.5281/zenodo.27365,,1,software,https://github.com/rinde/vanLon15-PRIMA-code,2,0,"{""Java"": 10135}",Other,1,1,[],1,2,14,2,2,14,15,86982,15,86982 10.5281/zenodo.274039,,1,publication,,0,,,,,,,,0,10,0,0,10,10,0,10,0 10.5281/zenodo.274194,,1,publication,,0,,,,,,,,0,10,0,0,10,10,0,10,0 10.5281/zenodo.274214,,1,software,https://github.com/openshs/openshs,5,4,"{""Python"": 116184}",GNU General Public License v2.0,9,4,"[simulation, smarthome]",9,4,53,5,4,53,53,28285085,53,28285085 10.5281/zenodo.274675,,1,publication,,0,,,,,,,,0,2,0,0,2,2,0,2,0 10.5281/zenodo.274914,,1,dataset,,45,,,,,,,,17,66,45,17,66,73,2459822,73,2459822 10.5281/zenodo.275434,10.5281/zenodo.595810,1,software,https://github.com/jenspetersen/2017_JMI,0,0,"{""Python"": 36964, ""Jupyter Notebook"": 35434}",MIT License,1,1,[],1,0,4,0,0,6,7,0,4,0 10.5281/zenodo.275585,,1,publication,,0,,,,,,,,0,6,0,0,6,6,0,6,0 10.5281/zenodo.275591,,1,publication,,0,,,,,,,,0,20,0,0,20,20,0,20,0 10.5281/zenodo.275624,10.5281/zenodo.598058,1,software,https://github.com/ericmjl/mia-stats,1,1,"{""Jupyter Notebook"": 3011990, ""Python"": 382, ""Shell"": 101}","BSD 3-Clause ""New"" or ""Revised"" License",0,1,[],0,1,6,1,1,9,12,1209367,7,1209367 10.5281/zenodo.276576,,1,publication,,0,,,,,,,,0,0,0,0,0,0,0,0,0 10.5281/zenodo.276727,,1,publication,,0,,,,,,,,0,4,0,0,4,4,0,4,0 10.5281/zenodo.276848,,1,publication,,0,,,,,,,,0,1,0,0,1,1,0,1,0 10.5281/zenodo.276993,,1,publication,,0,,,,,,,,0,7,0,0,7,7,0,7,0 10.5281/zenodo.27700,,1,dataset,https://github.com/davidcarozza/boats0d-review,5,0,"{""MATLAB"": 103418}",,1,1,[],1,5,69,5,5,69,73,47700105,73,47700105 10.5281/zenodo.27734,10.5281/zenodo.594044,1,software,https://github.com/smakonin/AMPds,15,1,"{""Jupyter Notebook"": 23554006, ""Python"": 48316, ""SQLPL"": 4244, ""Shell"": 2875, ""TeX"": 603}",MIT License,1,1,[nilm],1,15,94,17,16,108,123,106272481,103,63560805 10.5281/zenodo.277490,,1,publication,,0,,,,,,,,0,3,0,0,3,3,0,3,0 10.5281/zenodo.278322,,1,publication,,0,,,,,,,,0,4,0,0,4,4,0,4,0 10.5281/zenodo.278715,,1,publication,,0,,,,,,,,0,21,0,0,21,23,0,23,0 10.5281/zenodo.279350,,1,publication,,0,,,,,,,,0,5,0,0,5,6,0,6,0 10.5281/zenodo.27944,,1,publication,,2,,,,,,,,2,87,2,2,87,87,601112,87,601112 10.5281/zenodo.27945,10.5281/zenodo.593389,1,software,https://github.com/fabriziocosta/EDeN,8,19,"{""Python"": 166985, ""Shell"": 446}",MIT License,31,6,[],31,8,30,11,11,96,102,59288591,31,57954632 10.5281/zenodo.279731,,1,publication,,0,,,,,,,,0,10,0,0,10,10,0,10,0 10.5281/zenodo.28008,,1,software,,0,,,,,,,,0,8,0,0,8,9,0,9,0 10.5281/zenodo.280458,,1,publication,,0,,,,,,,,0,3,0,0,3,3,0,3,0 10.5281/zenodo.280846,,1,publication,,0,,,,,,,,0,4,0,0,4,4,0,4,0 10.5281/zenodo.281081,,1,publication,,0,,,,,,,,0,4,0,0,4,4,0,4,0 10.5281/zenodo.281475,,1,publication,,0,,,,,,,,0,3,0,0,3,3,0,3,0 10.5281/zenodo.281880,,1,publication,,0,,,,,,,,0,2,0,0,2,2,0,2,0 10.5281/zenodo.28514,10.5281/zenodo.593563,1,software,https://github.com/sagemath/sage,0,274,"{""Python"": 80208808, ""C++"": 339021, ""HTML"": 266116, ""Shell"": 220866, ""Gnuplot"": 211038, ""M4"": 128439, ""C"": 113683, ""Objective-C"": 67085, ""Makefile"": 45076, ""GAP"": 35706, ""MATLAB"": 29563, ""Dockerfile"": 15415, ""JavaScript"": 6045, ""TeX"": 4722, ""Batchfile"": 3276, ""Smarty"": 2090, ""PHP"": 1678, ""AppleScript"": 1388, ""Emacs Lisp"": 252, ""NewLisp"": 163, ""Assembly"": 113, ""Ruby"": 15}",Other,1006,120,"[math, sage, python, mathematics, algorithms]",1006,0,55,10,8,318,357,223779106,55,0 10.5281/zenodo.28518,10.5281/zenodo.593209,1,software,https://github.com/jakevdp/supersmoother,0,14,"{""Python"": 50522, ""Makefile"": 245}","BSD 2-Clause ""Simplified"" License",45,4,[],45,0,5,2,2,160,165,478594,5,0 10.5281/zenodo.28536,,1,software,https://github.com/WMD-Bath/sulfur-model,0,0,"{""Jupyter Notebook"": 398761, ""Python"": 58706}",GNU General Public License v3.0,2,10,"[sulfur, sulphur, thermodynamics, phase-diagram]",2,0,9,0,0,9,9,0,9,0 10.5281/zenodo.28640,10.5281/zenodo.591637,1,software,https://github.com/rdkit/rdkit,6,303,"{""C++"": 10433667, ""Python"": 3795995, ""CMake"": 746762, ""Java"": 320728, ""Jupyter Notebook"": 240615, ""C"": 228093, ""Yacc"": 58840, ""LLVM"": 38937, ""TSQL"": 35212, ""HTML"": 20217, ""JavaScript"": 13644, ""Makefile"": 10552, ""Shell"": 10236, ""Fortran"": 7661, ""C#"": 6745, ""Smarty"": 5864, ""Lex"": 4508, ""SMT"": 3010, ""Dockerfile"": 2034, ""QMake"": 389}",Other,624,84,"[cheminformatics, c-plus-plus, python, rdkit]",624,3,22,248,32,1061,1159,7589811397,22,155366928 10.5281/zenodo.288960,,1,software,,9,,,,,,,,7,34,9,7,34,35,59323504,35,59323504 10.5281/zenodo.290199,,1,dataset,,172,,,,,,,,57,27,172,57,27,32,109616859,32,109616859 10.5281/zenodo.290203,,1,software,,0,,,,,,,,0,37,0,0,37,38,0,38,0 10.5281/zenodo.290217,,1,dataset,,181,,,,,,,,9,54,181,9,54,56,176518366,56,176518366 10.5281/zenodo.290219,,1,software,,8,,,,,,,,8,49,8,8,49,49,459812304,49,459812304 10.5281/zenodo.290220,,1,dataset,,291,,,,,,,,47,33,291,47,33,39,671608262,39,671608262 10.5281/zenodo.290283,10.5281/zenodo.596640,1,software,https://github.com/PascalKieslich/mousetrap,0,5,"{""R"": 348711, ""C++"": 66690}",GNU General Public License v3.0,15,6,"[mouse-tracking, r, analysis, visualization, clustering]",15,0,25,3,3,183,195,4578972,26,0 10.5281/zenodo.290592,,1,publication,,13,,,,,,,,12,49,13,12,49,49,1929330,49,1929330 10.5281/zenodo.290662,10.5281/zenodo.773250,1,publication,,5,,,,,,,,5,63,13,11,161,200,611380991,66,22413905 10.5281/zenodo.29070,,1,dataset,,1,,,,,,,,1,26,1,1,26,27,187201795,27,187201795 10.5281/zenodo.291404,,1,dataset,,0,,,,,,,,0,5,0,0,5,5,0,5,0 10.5281/zenodo.291907,,1,publication,,22,,,,,,,,22,6,22,22,6,6,4693458,6,4693458 10.5281/zenodo.291962,,1,software,https://github.com/nebogeo/coding-with-knots,,1,"{""SuperCollider"": 74021, ""Python"": 30439}",,4,2,[],4,,,,,,,,, 10.5281/zenodo.292986,,1,dataset,,29,,,,,,,,20,53,29,20,53,57,41761392,57,41761392 10.5281/zenodo.292993,,1,dataset,,0,,,,,,,,0,14,0,0,13,15,0,16,0 10.5281/zenodo.293010,,1,software,,56,,,,,,,,20,58,56,20,58,63,215771,63,215771 10.5281/zenodo.293015,10.5281/zenodo.600609,1,dataset,,16,,,,,,,,10,31,16,10,31,34,341797681,34,341797681 10.5281/zenodo.293016,,1,dataset,,47,,,,,,,,21,28,47,21,28,31,223056492152,31,223056492152 10.5281/zenodo.293041,,1,publication,,24,,,,,,,,9,35,24,9,35,37,901192626,37,901192626 10.5281/zenodo.293804,,1,publication,,971,,,,,,,,848,16,971,848,16,17,55445407681,17,55445407681 10.5281/zenodo.29385,,1,software,https://github.com/abdelkaderm/esd,3,0,"{""R"": 1413498, ""Rebol"": 463}",,1,2,[],1,3,112,3,3,112,116,180430401,116,180430401 10.5281/zenodo.293976,,1,publication,,0,,,,,,,,0,38,0,0,38,49,0,49,0 10.5281/zenodo.29600,,1,dataset,,62,,,,,,,,6,30,62,6,30,33,513025471,33,513025471 10.5281/zenodo.29602,,1,dataset,,1,,,,,,,,1,9,1,1,9,11,3960200,11,3960200 10.5281/zenodo.29607,,1,dataset,,0,,,,,,,,0,19,0,0,19,20,0,20,0 10.5281/zenodo.29814,10.5281/zenodo.593789,1,software,https://github.com/mdoube/BoneJ,3,21,"{""Java"": 1152363}",,24,8,[],24,2,30,9,3,37,42,2966372,34,978714 10.5281/zenodo.30002,,1,publication,,11,,,,,,,,11,19,11,11,19,19,2755500,19,2755500 10.5281/zenodo.30004,,1,publication,,32,,,,,,,,32,38,32,32,38,38,180836960,38,180836960 10.5281/zenodo.30036,,1,publication,,26,,,,,,,,25,105,26,25,105,106,250008304,106,250008304 10.5281/zenodo.30102,,1,publication,https://github.com/sweetflute/patient-provider-collaboration-pghd,3,0,{},,0,2,[],0,3,29,3,3,29,29,669117,29,669117 10.5281/zenodo.30228,,1,dataset,,28765,,,,,,,,684,115,28765,684,115,121,2158447443556,121,2158447443556 10.5281/zenodo.30231,10.5281/zenodo.593991,1,software,https://github.com/spiccolroaz/air2water,4,1,"{""Fortran"": 33894, ""MATLAB"": 6791}",Other,3,4,[],3,4,99,6,5,105,108,113390022,99,89482536 10.5281/zenodo.30245,,1,publication,,9,,,,,,,,9,5,9,9,5,5,2255157,5,2255157 10.5281/zenodo.30278,,1,software,https://github.com/cdiener/dcf,0,0,"{""C++"": 8294330, ""Objective-C"": 336066, ""R"": 12791, ""CMake"": 1936, ""Shell"": 1180, ""C"": 4}",GNU General Public License v3.0,0,1,[],0,0,8,0,0,8,8,0,8,0 10.5281/zenodo.30279,,1,dataset,,1,,,,,,,,1,23,1,1,23,26,48924176,26,48924176 10.5281/zenodo.302862,,1,publication,,1711,,,,,,,,802,1025,1711,802,1025,1196,1103918328092,1196,1103918328092 10.5281/zenodo.30304,,1,software,,0,,,,,,,,0,40,0,0,40,40,0,40,0 10.5281/zenodo.30322,,1,publication,,12,,,,,,,,10,80,12,10,80,90,86612604,90,86612604 10.5281/zenodo.30559,10.5281/zenodo.593916,1,software,https://github.com/MathieuLeocmach/DDM,63,2,"{""MATLAB"": 26009}",GNU General Public License v2.0,3,4,[],3,58,357,64,59,372,391,160441796,375,158108895 10.5281/zenodo.30569,10.5281/zenodo.593611,1,software,https://github.com/JohnCremona/ecdata,0,1,"{""M"": 615501, ""HTML"": 305615, ""Python"": 41188, ""Makefile"": 3196}",,4,2,[],4,0,29,0,0,70,73,0,29,0 10.5281/zenodo.30626,,1,software,https://github.com/SamplingConstrainedNetworks/code,1,0,"{""C++"": 33810, ""CMake"": 640}",MIT License,1,1,[],1,1,27,1,1,27,28,18930,28,18930 10.5281/zenodo.30669,,1,software,https://github.com/SCBuergel/Heart-on-a-Chip-Controller,1,0,"{""C#"": 21748}",,0,1,[],0,1,9,1,1,9,9,45803,9,45803 10.5281/zenodo.30941,,1,software,,13,,,,,,,,13,485,13,13,485,545,360298328,545,360298328 10.5281/zenodo.30954,10.5281/zenodo.593968,1,software,https://github.com/mdekauwe/FitFarquharModel,1,12,"{""Python"": 223380, ""HTML"": 115836, ""Makefile"": 238}",,7,5,[],7,1,14,2,2,52,54,196356,14,98147 10.5281/zenodo.30958,,1,dataset,,1,,,,,,,,1,27,1,1,27,27,62422,27,62422 10.5281/zenodo.30972,,1,publication,,16,,,,,,,,10,13,16,10,13,19,347038208,19,347038208 10.5281/zenodo.30975,,1,publication,,5,,,,,,,,5,6,5,5,6,6,82480900,6,82480900 10.5281/zenodo.311651,10.5281/zenodo.781592,1,dataset,,5,,,,,,,,3,40,31,22,112,128,2809918606,43,227394512 10.5281/zenodo.31187,10.5281/zenodo.593310,1,software,https://github.com/chaigner/rfcontrol,0,3,"{""MATLAB"": 23590}",GNU Lesser General Public License v3.0,5,4,[],5,0,6,0,0,15,16,0,6,0 10.5281/zenodo.31192,10.5281/zenodo.592881,1,software,https://github.com/rootpy/root_numpy,4,49,"{""Python"": 272187, ""C++"": 30640, ""Makefile"": 5121, ""TeX"": 4181, ""Shell"": 2047, ""C"": 601}","BSD 3-Clause ""New"" or ""Revised"" License",115,21,"[python, root, numpy, cern, cython, hep]",115,3,14,31,11,148,183,32940450,14,4169104 10.5281/zenodo.31208,10.5281/zenodo.594098,1,software,https://github.com/jonathanweare/Fast-Randomized-Iteration-FRI-,1,0,"{""C++"": 38741, ""Shell"": 112}",MIT License,3,2,[],3,1,19,2,2,29,29,24127,19,8523 10.5281/zenodo.31216,,1,software,,1,,,,,,,,1,98,1,1,98,100,1805208,100,1805208 10.5281/zenodo.31234,,1,publication,,500,,,,,,,,471,859,500,471,859,883,3419726000,883,3419726000 10.5281/zenodo.31253,10.5281/zenodo.592912,1,software,https://github.com/ALPSCore/ALPSCore,3,31,"{""C++"": 5422027, ""Shell"": 354342, ""Python"": 199953, ""CMake"": 105779, ""Makefile"": 73338, ""C"": 60444, ""M4"": 19093}",Other,52,26,[],52,2,7,57,7,108,124,82834064,7,4627911 10.5281/zenodo.31258,,1,software,,3,,,,,,,,3,147,3,3,147,157,75239451,157,75239451 10.5281/zenodo.31268,,1,software,https://github.com/andersfi/TTG,1,0,{},Creative Commons Zero v1.0 Universal,0,1,[],0,1,18,1,1,18,18,4784,18,4784 10.5281/zenodo.31272,,1,publication,,7,,,,,,,,7,53,7,7,53,53,192717,53,192717 10.5281/zenodo.31288,10.5281/zenodo.592826,1,software,https://github.com/Parallel-in-Time/PararealF90,0,2,"{""Fortran"": 126508, ""Python"": 65694, ""Makefile"": 4595, ""Shell"": 734}",Other,8,4,[],8,0,25,0,0,32,32,0,25,0 10.5281/zenodo.31316,10.5281/zenodo.598306,1,software,https://github.com/SALib/SALib,3,88,"{""Python"": 2282120, ""TeX"": 40231, ""Shell"": 1248, ""Batchfile"": 142}",MIT License,254,25,"[sensitivity-analysis-library, sensitivity-analysis, sobol, morris, python, global-sensitivity-analysis, numpy, salib, joss]",254,3,22,30,13,352,370,24945153,22,2499312 10.5281/zenodo.31329,10.5281/zenodo.593930,1,software,https://github.com/ahmetcecen/MATLAB-Spatial-Correlation-Toolbox,64,3,"{""MATLAB"": 33174}","BSD 3-Clause ""New"" or ""Revised"" License",3,2,[],3,40,307,65,40,331,361,278602044,334,274317120 10.5281/zenodo.31438,,1,software,https://github.com/pihmadmin/PIHM,2,5,"{""FLUX"": 9677100, ""C"": 818571, ""Makefile"": 7495}",GNU General Public License v2.0,6,7,[],6,2,15,2,2,15,15,20488788,15,20488788 10.5281/zenodo.31442,,1,dataset,,10,,,,,,,,8,50,10,8,50,52,17558354980,52,17558354980 10.5281/zenodo.31470,,1,software,https://github.com/mbernet79/SDSS_QSOsel_Bernet,0,1,"{""MATLAB"": 37659}","BSD 2-Clause ""Simplified"" License",0,1,[],0,0,24,0,0,24,24,0,24,0 10.5281/zenodo.31480,,1,software,https://github.com/GNilsonne/Stimulus-presentation-code-Oxazepam-and-emotion,1,0,"{""Scilab"": 15978}",MIT License,0,1,[],0,1,9,1,1,9,10,19384874,10,19384874 10.5281/zenodo.31503,,1,dataset,,1,,,,,,,,1,74,1,1,74,78,120043948,78,120043948 10.5281/zenodo.31611,,1,software,,0,,,,,,,,0,50,0,0,50,50,0,50,0 10.5281/zenodo.31631,10.5281/zenodo.594205,1,software,https://github.com/tanghaibao/jcvi,25,77,"{""Python"": 2531773, ""Dockerfile"": 1005, ""Makefile"": 445}","BSD 2-Clause ""Simplified"" License",251,36,"[genomics, genome-sequencing, comparative-genomics, variant-calling, genetic-algorithm, genetic-maps, sequence-alignments]",251,22,636,31,27,714,787,24207415,687,18671725 10.5281/zenodo.31640,10.5281/zenodo.593644,1,software,https://github.com/shortlab/grime,12,4,"{""TeX"": 81947, ""C++"": 37364, ""C"": 33264, ""Visual Basic"": 28949, ""Shell"": 9844, ""Batchfile"": 2744, ""Makefile"": 1479, ""Python"": 1084}",GNU Lesser General Public License v2.1,1,5,[],1,9,77,12,9,85,87,1040026824,78,1040026824 10.5281/zenodo.31730,,1,publication,,32,,,,,,,,32,99,32,32,99,107,17917504,107,17917504 10.5281/zenodo.31760,,1,software,https://github.com/dalekocevski/MorphGUI,1,0,"{""Perl"": 52800}",MIT License,1,2,[],1,1,30,1,1,30,31,1958734,31,1958734 10.5281/zenodo.31771,,1,software,https://github.com/GNilsonne/hippocampus-volume-telomere-length,1,0,"{""R"": 17462}",,0,1,[],0,1,7,1,1,7,7,298751,7,298751 10.5281/zenodo.32015,,1,software,,0,,,,,,,,0,6,0,0,6,6,0,6,0 10.5281/zenodo.32026,,1,software,https://github.com/RemkoDuursma/duursma2015plosone,0,4,"{""TeX"": 23675, ""R"": 13266}",,2,2,[],2,0,21,0,0,21,21,0,21,0 10.5281/zenodo.32056,10.5281/zenodo.594184,1,software,https://github.com/EFerriss/pynams,3,4,"{""Jupyter Notebook"": 3495239, ""Python"": 301148}",MIT License,5,6,[],5,2,13,15,8,79,93,61800954,13,312678 10.5281/zenodo.321245,,1,software,https://github.com/DavidMStraub/paper-bsmumu-ans,0,0,"{""Jupyter Notebook"": 1083697, ""Python"": 2975}",,0,2,[],0,0,3,0,0,3,3,0,3,0 10.5281/zenodo.321251,10.5281/zenodo.600636,1,dataset,,2,,,,,,,,2,28,2,2,28,28,21913272,28,21913272 10.5281/zenodo.321285,,1,dataset,,1,,,,,,,,1,9,1,1,9,9,1074703,9,1074703 10.5281/zenodo.321385,10.5281/zenodo.596852,1,software,https://github.com/gmiaslab/MathIOmica-MSViewer,20,1,"{""Mathematica"": 3715722}",Other,0,1,[],0,16,95,20,16,96,102,23783320,101,23783320 10.5281/zenodo.321428,,1,software,https://github.com/iterater/health-des,0,3,"{""Python"": 16584}",,4,4,"[patient, discrete-events-simulations, queueing, simulation]",4,0,3,0,0,3,3,0,3,0 10.5281/zenodo.32146,,1,software,https://github.com/electronicvisions/nux,0,3,"{""SystemVerilog"": 1226359, ""Stata"": 828248, ""C"": 259075, ""Assembly"": 66869, ""Makefile"": 21524, ""Shell"": 14065, ""Python"": 13508, ""M4"": 10269, ""Tcl"": 9222, ""C++"": 6889}",Other,3,3,[],3,0,7,0,0,7,7,0,7,0 10.5281/zenodo.32147,,1,software,https://github.com/electronicvisions/ppu-software,0,1,"{""C"": 68992, ""Python"": 1414}",,1,3,"[hicann-dls, ppu, nux-processor]",1,0,3,0,0,3,3,0,3,0 10.5281/zenodo.32156,,1,dataset,,103,,,,,,,,91,1738,103,91,1738,1855,8915568348,1855,8915568348 10.5281/zenodo.321639,,1,publication,,1,,,,,,,,1,25,1,1,25,27,199159799,27,199159799 10.5281/zenodo.32175,10.5281/zenodo.592753,1,software,https://github.com/NMRLipids/lipid_ionINTERACTION,0,8,"{""TeX"": 385352, ""Shell"": 300490, ""Gnuplot"": 38549, ""Awk"": 1349}",,0,4,[],0,0,17,0,0,32,33,0,17,0 10.5281/zenodo.321854,,1,software,,7,,,,,,,,7,90,7,7,90,99,131173,99,131173 10.5281/zenodo.321858,,1,software,https://github.com/JAvRZ/MNCUsingAnAggregatedDatabase,0,0,{},,0,1,[],0,0,15,0,0,15,15,0,15,0 10.5281/zenodo.321903,,1,publication,,2,,,,,,,,2,4,2,2,4,4,424684,4,424684 10.5281/zenodo.321910,,1,software,https://github.com/Ranae/Roots-to-SoilC,6,2,"{""HTML"": 1800773, ""R"": 187487, ""TeX"": 47073}",GNU General Public License v3.0,1,1,[],1,5,36,6,5,36,36,603191994,36,603191994 10.5281/zenodo.321923,,1,software,https://github.com/maciverlab/paleovision,4,1,"{""MATLAB"": 183661, ""R"": 38731}",MIT License,0,2,[],0,4,67,4,4,67,67,3172630176,67,3172630176 10.5281/zenodo.321930,,1,software,https://github.com/seananderson/heavy-tails,0,1,"{""TeX"": 857337, ""R"": 147976, ""Stan"": 4924, ""Makefile"": 2105, ""Shell"": 1652}",,9,1,[],9,0,34,0,0,34,34,0,34,0 10.5281/zenodo.321959,,1,dataset,,5,,,,,,,,5,28,5,5,28,29,923325200,29,923325200 10.5281/zenodo.322256,,1,publication,,5,,,,,,,,5,8,5,5,8,11,117050750,11,117050750 10.5281/zenodo.322347,10.5281/zenodo.594927,1,software,https://github.com/rjchallis/assembly-stats,6,7,"{""JavaScript"": 54743, ""Perl"": 7454, ""CSS"": 7249, ""HTML"": 6659}",MIT License,32,3,[],32,6,197,7,7,230,242,4633500,207,3971820 10.5281/zenodo.322377,,1,dataset,,161,,,,,,,,68,143,161,68,143,148,288077246,148,288077246 10.5281/zenodo.322462,,1,dataset,,4,,,,,,,,3,15,4,3,15,16,3217392,16,3217392 10.5281/zenodo.322463,,1,publication,https://github.com/thomased/ms_spiderpattern,0,0,"{""R"": 9480}",,0,1,"[science, colour, spiders]",0,0,10,0,0,10,10,0,10,0 10.5281/zenodo.32260,,1,publication,,7,,,,,,,,6,8,7,6,8,8,1082158,8,1082158 10.5281/zenodo.322616,10.5281/zenodo.598152,1,software,https://github.com/tudoetknjt/ed810593,1,0,{},,0,1,[],0,1,8,4,3,23,25,53816619,8,5684616 10.5281/zenodo.322630,,1,dataset,,1,,,,,,,,1,16,1,1,16,16,34460128,16,34460128 10.5281/zenodo.322649,,1,software,https://github.com/peckhams/topoflow,2,8,"{""Python"": 3712783, ""HTML"": 259073, ""CSS"": 1590}",MIT License,14,4,[],14,2,17,2,2,17,18,73821896,18,73821896 10.5281/zenodo.322677,10.5281/zenodo.595069,1,software,https://github.com/malvikasharan/APRICOT,2,2,"{""Python"": 312454, ""Shell"": 34583, ""Dockerfile"": 5314, ""Makefile"": 2118}",ISC License,4,2,[],4,2,22,3,2,73,79,1951599,24,1300540 10.5281/zenodo.322894,10.5281/zenodo.596989,1,software,https://github.com/QCoDeS/Qcodes,1,118,"{""Python"": 3669034, ""C++"": 104863}",Other,99,26,"[data-aquisition, physics, experiments]",99,1,17,17,15,270,303,99337579,17,756812 10.5281/zenodo.32402,,1,software,https://github.com/sriniker/rdkit,1,0,"{""C++"": 9386485, ""Python"": 3519489, ""CMake"": 685130, ""Java"": 306641, ""Jupyter Notebook"": 240615, ""C"": 236942, ""Yacc"": 56007, ""LLVM"": 38431, ""HTML"": 18138, ""JavaScript"": 11595, ""Makefile"": 10552, ""Shell"": 9029, ""Fortran"": 7661, ""C#"": 6745, ""Smarty"": 5864, ""Lex"": 4508, ""SMT"": 3010, ""QMake"": 389}",Other,0,1,[],0,1,9,1,1,9,9,23852250,9,23852250 10.5281/zenodo.32410,10.5281/zenodo.594232,1,software,https://github.com/tgenewein/BoundedRationalityAbstractionAndHierarchicalDecisionMaking,0,0,"{""Julia"": 74106}",MIT License,0,1,[],0,0,17,0,0,28,28,0,17,0 10.5281/zenodo.32420,,1,software,,1,,,,,,,,1,58,1,1,58,59,122576,59,122576 10.5281/zenodo.32437,10.5281/zenodo.593740,1,software,https://github.com/amacd31/phildb,1,5,"{""Python"": 108740, ""Shell"": 690, ""Makefile"": 395}",Other,20,5,"[python, timeseries, timeseries-database, time-series, temporal, logging, pandas]",20,1,26,2,2,46,58,233795,27,72157 10.5281/zenodo.32468,,1,software,https://github.com/bmcfee/pescador,1,7,"{""Python"": 121406, ""Shell"": 876}",ISC License,58,8,"[python, machine-learning, nyucds]",58,1,18,1,1,18,19,28036,19,28036 10.5281/zenodo.32488,10.5281/zenodo.594038,1,software,https://github.com/birnstiel/Birnstiel2015_scripts,0,1,"{""HTML"": 485820, ""Python"": 42065, ""Jupyter Notebook"": 19045}",,1,2,[],1,0,20,0,0,47,57,0,20,0 10.5281/zenodo.324907,,1,software,https://github.com/LozRiviera/SCN_enrich_Meta,0,0,"{""Jupyter Notebook"": 2403296}",,1,1,[],1,0,2,0,0,2,2,0,2,0 10.5281/zenodo.32557,10.5281/zenodo.592892,1,software,https://github.com/Rexamine/stringi,3,27,"{""C++"": 26394265, ""C"": 7338332, ""HTML"": 1803284, ""R"": 914661, ""Objective-C"": 56142, ""M4"": 45409, ""Shell"": 14987, ""TeX"": 3540, ""CSS"": 1210}",Other,160,18,"[stringi, icu, icu4c, r, regex, regexp, string-manipulation]",160,2,32,61,21,177,196,2602933024,33,76508097 10.5281/zenodo.32573,,1,poster,,27,,,,,,,,25,58,27,25,58,58,57295944,58,57295944 10.5281/zenodo.32577,,1,software,https://github.com/matthiaskoenig/bdl-analysis,0,0,"{""HTML"": 20717736, ""TeX"": 548916, ""R"": 53667, ""MATLAB"": 2769}",,0,1,[],0,0,16,0,0,16,16,0,16,0 10.5281/zenodo.32579,,1,dataset,,19,,,,,,,,13,122,19,13,122,129,8508540940,129,8508540940 10.5281/zenodo.32595,,1,software,https://github.com/ismrmrd/philips_to_ismrmrd,4,9,"{""C++"": 349301, ""XSLT"": 7476, ""CMake"": 1817}",Other,8,7,[],8,4,25,4,4,25,25,317568,25,317568 10.5281/zenodo.32596,,1,software,https://github.com/ismrmrd/siemens_to_ismrmrd,1,20,"{""XSLT"": 291985, ""C++"": 285840, ""CMake"": 9138}",Other,7,6,[],7,1,42,1,1,42,42,96958,42,96958 10.5281/zenodo.32597,,1,software,https://github.com/ismrmrd/bruker_to_ismrmrd,3,4,"{""C++"": 79683, ""CMake"": 2699, ""Lex"": 1828, ""C"": 317}",Other,3,6,[],3,3,24,3,3,24,24,72699,24,72699 10.5281/zenodo.32616,10.5281/zenodo.594268,1,software,https://github.com/nschorgh/Planetary-Code-Collection,1,3,"{""Fortran"": 384387, ""Makefile"": 9993, ""MATLAB"": 4981, ""Shell"": 386, ""Perl"": 25}",,5,1,"[planetary-surfaces, exosphere-models, ice-evolution-models, self-heating, mars, moon, mauna-kea, vapor-diffusion, thermal-models]",5,1,9,8,4,135,153,13372313,9,217607 10.5281/zenodo.32618,10.5281/zenodo.593832,1,software,https://github.com/ismrmrd/ismrmrd,3,49,"{""C++"": 500823, ""MATLAB"": 144247, ""C"": 81719, ""CMake"": 23943}",Other,48,13,[],48,3,23,3,3,24,24,659628,23,659628 10.5281/zenodo.32620,10.5281/zenodo.593381,1,software,https://github.com/UW-Hydro/RVIC,1,41,"{""Python"": 273625, ""C"": 1827, ""nesC"": 130}",GNU General Public License v3.0,17,6,[],17,1,15,5,5,45,49,1475626,15,298470 10.5281/zenodo.32637,,1,software,https://github.com/BMKEG/UimaBioC,0,2,"{""Java"": 537524, ""Makefile"": 18744, ""Shell"": 3408}",Apache License 2.0,0,2,[],0,0,9,0,0,9,9,0,9,0 10.5281/zenodo.32650,10.5281/zenodo.593834,1,software,https://github.com/ismrmrd/ismrmrd-python,0,10,"{""Python"": 95254}",,9,8,[],9,0,9,0,0,10,10,0,9,0 10.5281/zenodo.32689,10.5281/zenodo.592757,1,software,https://github.com/NMRLipids/nmrlipids.blogspot.fi,0,9,"{""TeX"": 763694, ""Shell"": 40386, ""Python"": 7073, ""Makefile"": 3721, ""Awk"": 471}",GNU General Public License v2.0,5,5,[],5,0,13,0,0,21,22,0,13,0 10.5281/zenodo.32690,10.5281/zenodo.618250,1,publication,,76,,,,,,,,68,313,377,304,657,725,413876486,318,89473736 10.5281/zenodo.32691,,1,software,,55,,,,,,,,49,493,55,49,493,509,1530126565,509,1530126565 10.5281/zenodo.32716,,1,,,,,,,,,,,,,,,,,,, 10.5281/zenodo.32740,,1,dataset,,65,,,,,,,,25,71,65,25,71,76,100034982760,76,100034982760 10.5281/zenodo.32741,,1,software,,7,,,,,,,,6,19,7,6,19,20,430500,20,430500 10.5281/zenodo.32745,10.5281/zenodo.593691,1,software,https://github.com/simulkade/FVTool,9,19,"{""MATLAB"": 610315, ""HTML"": 49849}","BSD 2-Clause ""Simplified"" License",31,14,"[fvm, matlab, octave, toolbox, finite-volume, boundary-conditions, tvd, convection, diffusion]",31,9,161,36,34,430,445,15939180,165,3984795 10.5281/zenodo.32750,10.5281/zenodo.593305,1,software,https://github.com/BMKEG/bioscholar,0,1,"{""JavaScript"": 60901, ""Java"": 31371, ""CSS"": 16224, ""HTML"": 7192}",Apache License 2.0,0,3,[],0,0,8,0,0,11,11,0,8,0 10.5281/zenodo.32794,,1,dataset,,2,,,,,,,,2,19,2,2,19,20,57424,20,57424 10.5281/zenodo.32851,10.5281/zenodo.596066,1,software,,8,,,,,,,,8,69,9,9,84,100,2522271,71,651672 10.5281/zenodo.32852,,1,software,,25,,,,,,,,25,259,25,25,259,277,63400350,277,63400350 10.5281/zenodo.32899,10.5281/zenodo.593101,1,software,https://github.com/oborel/obo-relations,6,14,"{""HTML"": 92877, ""Makefile"": 8128, ""Perl"": 1149, ""Shell"": 728}",,26,22,[],26,3,15,170,18,146,165,332738444,15,7722468 10.5281/zenodo.32915,,1,publication,,48,,,,,,,,48,592,48,48,592,600,23468256,600,23468256 10.5281/zenodo.32989,,1,dataset,,0,,,,,,,,0,17,0,0,17,18,0,18,0 10.5281/zenodo.33137,,1,software,https://github.com/F1000Research/YEATSCODE2,0,0,"{""Perl"": 2294546, ""Shell"": 146730, ""TeX"": 136809, ""Groff"": 41877, ""HTML"": 34875, ""CSS"": 9035, ""Python"": 4026, ""C"": 3959, ""Perl 6"": 2489, ""Tcl"": 62}",,0,1,[],0,0,16,0,0,16,16,0,16,0 10.5281/zenodo.33166,,1,dataset,,63,,,,,,,,58,228,63,58,228,234,39180407868,234,39180407868 10.5281/zenodo.33178,,1,publication,,204,,,,,,,,190,1407,204,190,1407,1489,190068228,1489,190068228 10.5281/zenodo.33291,10.5281/zenodo.593415,1,software,https://github.com/woutergins/satlas,0,0,"{""Python"": 305914}",Other,1,3,[],1,0,18,1,1,43,45,5721017,18,0 10.5281/zenodo.33329,,1,software,https://github.com/rubenarslan/formr.org,0,14,"{""PHP"": 1217769, ""CSS"": 193774, ""JavaScript"": 150189, ""Makefile"": 2112, ""Hack"": 1160}",Other,43,5,"[javascript, formr, surveys, php, survey, experience-sampling, opencpu, knitr, reproducible-research, feedback]",43,0,20,0,0,20,20,0,20,0 10.5281/zenodo.33388,,1,software,,34,,,,,,,,24,94,34,24,94,99,54496371,99,54496371 10.5281/zenodo.33539,,1,dataset,,13,,,,,,,,8,39,13,8,39,42,854254352,42,854254352 10.5281/zenodo.33584,,1,software,https://github.com/FAIRDataInitiative/DataFairPort,2,5,"{""Perl"": 287152, ""Java"": 27054, ""HTML"": 7634, ""Perl 6"": 2619}",,10,6,[],10,2,93,2,2,93,132,18842202,132,18842202 10.5281/zenodo.33608,,1,dataset,,3,,,,,,,,3,62,3,3,62,64,5976883200,64,5976883200 10.5281/zenodo.33627,,1,publication,,0,,,,,,,,0,5,0,0,5,5,0,5,0 10.5281/zenodo.33746,,1,software,https://github.com/ericmjl/h9-pb2-global-analysis,0,0,{},MIT License,1,1,[],1,0,3,0,0,3,3,0,3,0 10.5281/zenodo.33748,,1,software,https://github.com/mozillascience/leadership-training,1,19,"{""Shell"": 432}",,11,9,[],11,1,14,1,1,14,14,60130,14,60130 10.5281/zenodo.33788,,1,software,https://github.com/csullivan/weakrates,0,1,"{""Fortran"": 110344, ""C"": 7747, ""Makefile"": 2474, ""SourcePawn"": 1335, ""Pascal"": 868}",,5,2,[],5,0,13,0,0,13,13,0,13,0 10.5281/zenodo.33823,10.5281/zenodo.593966,1,software,https://github.com/ropensci/webchem,1,27,"{""R"": 188790}",Other,56,19,"[rstats, ropensci, chemical-information, webscraping, cas-number, chemspider, identifier, r, r-package]",56,1,18,1,1,41,44,87772,19,87772 10.5281/zenodo.33858,10.5281/zenodo.594323,1,software,https://github.com/UT-CHG/BET,0,17,"{""Python"": 728244}",Other,6,2,[],6,0,10,0,0,61,69,0,10,0 10.5281/zenodo.33899,,1,dataset,,10,,,,,,,,10,90,10,10,90,92,99440,92,99440 10.5281/zenodo.33933,10.5281/zenodo.593972,1,software,https://github.com/ashander/phenoecosim,0,0,"{""R"": 52727, ""C++"": 20172}",MIT License,1,1,"[dissertation, r, c-plus-plus, evolutionary, simulation]",1,0,4,0,0,14,14,0,4,0 10.5281/zenodo.33941,,1,dataset,,1,,,,,,,,1,41,1,1,41,44,1579810266,44,1579810266 10.5281/zenodo.33987,,1,software,https://github.com/dhimmel/bindingdb,2,0,"{""HTML"": 1160789}",,1,1,"[bindingdb, protein, compound, drug, binding, rephetio, hetionet, tsv]",1,2,36,2,2,36,38,15203182,38,15203182 10.5281/zenodo.34005,,1,publication,,91,,,,,,,,85,291,91,85,291,306,287376999,306,287376999 10.5281/zenodo.34029,,1,software,https://github.com/gifforda/JMI_Gifford_WAT_CT_HU_vs_MRI_FSF,0,1,"{""R"": 37083, ""MATLAB"": 5899, ""Python"": 4347}",MIT License,1,0,[],1,0,31,0,0,31,32,0,32,0 10.5281/zenodo.34045,,1,publication,,81,,,,,,,,78,121,81,78,121,126,211105440,126,211105440 10.5281/zenodo.34055,10.5281/zenodo.593767,1,software,https://github.com/sjbeckett/weighted-modularity-LPAwbPLUS,15,9,"{""PostScript"": 185583, ""R"": 131757, ""MATLAB"": 38619, ""TeX"": 12946, ""Julia"": 12673}",MIT License,18,3,[],18,15,105,18,17,131,141,40513389,110,33970005 10.5281/zenodo.34090,10.5281/zenodo.594144,1,software,https://github.com/arnikz/PIQMIe,0,0,"{""JavaScript"": 739258, ""HTML"": 79845, ""Python"": 33461, ""Perl"": 21413, ""CSS"": 13065, ""Shell"": 578}",GNU General Public License v3.0,0,0,"[proteomics, mass-spectrometry, bioinformatics-analysis, protein, identification, quantification, web-application]",0,0,45,0,0,45,50,0,50,0 10.5281/zenodo.34119,,1,video,,21,,,,,,,,7,64,21,7,64,66,5030935264,66,5030935264 10.5281/zenodo.34134,10.5281/zenodo.596802,1,software,https://github.com/michaelaye/pyciss,0,4,"{""Python"": 70587, ""Jupyter Notebook"": 47694, ""Makefile"": 1692}",ISC License,11,3,"[cassini, python, image-processing]",11,0,9,1,1,75,82,86525,9,0 10.5281/zenodo.34143,10.5281/zenodo.593051,1,software,https://github.com/jheare/OluridaSurvey2014,0,2,"{""R"": 40361, ""HTML"": 20315}",,2,4,[],2,0,15,3,3,124,144,5508405,18,0 10.5281/zenodo.34147,,1,software,https://github.com/dralynch/crambled,0,1,"{""R"": 31841}",GNU General Public License v2.0,2,1,[],2,0,13,0,0,13,13,0,13,0 10.5281/zenodo.34153,,1,software,,0,,,,,,,,0,11,0,0,11,11,0,11,0 10.5281/zenodo.34201,10.5281/zenodo.594226,1,software,https://github.com/BoostedColliderAnalysis/BoCA,0,2,"{""C++"": 675493, ""CMake"": 20949}",,3,1,[],3,0,9,0,0,11,11,0,9,0 10.5281/zenodo.34208,,1,software,https://github.com/F1000Research/MPC,0,0,"{""AMPL"": 45300, ""Java"": 39007}",,0,1,[],0,0,13,0,0,13,13,0,13,0 10.5281/zenodo.34209,10.5281/zenodo.594444,1,software,https://github.com/simonvh/fluff,3,11,"{""Python"": 124965}",MIT License,51,9,[],51,2,23,17,5,65,76,89467554,24,5948052 10.5281/zenodo.34267,,1,software,https://github.com/WaylandM/meristogram,0,0,"{""R"": 12873}",GNU General Public License v3.0,0,1,[],0,0,22,0,0,22,22,0,22,0 10.5281/zenodo.34277,10.5281/zenodo.593958,1,software,https://github.com/I2Cvb/retinopathy,5,0,"{""MATLAB"": 174154, ""Shell"": 103789, ""C++"": 89033, ""Fortran"": 15851, ""Python"": 10121, ""C"": 9862, ""Jupyter Notebook"": 7724, ""Makefile"": 2207}",MIT License,2,6,[],2,5,43,14,12,124,152,39164423,46,19578530 10.5281/zenodo.343934,,1,dataset,,1,,,,,,,,1,13,1,1,13,14,19131,14,19131 10.5281/zenodo.344036,10.5281/zenodo.595683,1,software,https://github.com/pdebuyl-lab/colloidal_chemotaxis_companion,0,0,"{""Jupyter Notebook"": 634997, ""Python"": 8216, ""OpenEdge ABL"": 2638, ""Makefile"": 1316}","BSD 3-Clause ""New"" or ""Revised"" License",0,1,[],0,0,18,0,0,25,28,0,21,0 10.5281/zenodo.34418,10.5281/zenodo.594416,1,software,https://github.com/earlbellinger/Multiperiod,0,0,"{""PostScript"": 146871, ""TeX"": 90493, ""R"": 15143, ""MATLAB"": 3490}",GNU Lesser General Public License v3.0,0,1,[],0,0,4,0,0,4,5,0,4,0 10.5281/zenodo.34430,,1,software,,0,,,,,,,,0,19,0,0,19,19,0,19,0 10.5281/zenodo.34433,10.5281/zenodo.596641,1,dataset,https://github.com/CQMP/HubbardBenchmarks_Data,1,1,"{""Python"": 471}",Other,5,13,[],5,1,29,1,1,29,33,30655153,31,30655153 10.5281/zenodo.34435,,1,image,,2,,,,,,,,2,15,2,2,15,16,878262,16,878262 10.5281/zenodo.344519,10.5281/zenodo.600659,1,dataset,,14,,,,,,,,7,12,14,7,12,12,1285188663,12,1285188663 10.5281/zenodo.34461,,1,publication,,43,,,,,,,,39,45,43,39,45,49,116296510,49,116296510 10.5281/zenodo.344615,,1,publication,,0,,,,,,,,0,10,0,0,10,10,0,10,0 10.5281/zenodo.344632,,1,publication,,7,,,,,,,,5,3,7,5,3,3,2377802,3,2377802 10.5281/zenodo.344633,,1,software,https://github.com/csiro-crop-informatics/granular,3,2,"{""R"": 26565, ""JavaScript"": 10280, ""HTML"": 7286, ""CSS"": 1439}",GNU General Public License v3.0,0,2,[rstats],0,2,80,3,2,80,85,239685,85,239685 10.5281/zenodo.34487,,1,software,,46,,,,,,,,41,446,46,41,446,450,12899260568,450,12899260568 10.5281/zenodo.34500,,1,software,,20,,,,,,,,20,83,20,20,83,90,176140,90,176140 10.5281/zenodo.345098,,1,publication,,564,,,,,,,,502,459,564,502,459,485,215842236,485,215842236 10.5281/zenodo.345099,10.5281/zenodo.592838,1,software,https://github.com/hyperspy/hyperspy,4,114,"{""Python"": 4216839, ""Jupyter Notebook"": 100688, ""Batchfile"": 103, ""C"": 29}",GNU General Public License v3.0,201,24,"[python, data-visualization, data-analysis, multi-dimensional]",201,4,97,242,81,2655,3590,8969539634,98,160825872 10.5281/zenodo.345130,,1,software,,24,,,,,,,,22,80,24,22,80,100,113896136,100,113896136 10.5281/zenodo.345135,,1,software,https://github.com/SwissTPH/TBRU_serialTB,4,0,"{""Jupyter Notebook"": 5675147, ""Python"": 121921, ""TeX"": 44040, ""Shell"": 18568, ""Perl"": 6797, ""R"": 2117}",GNU General Public License v3.0,1,2,[],1,4,71,4,4,71,72,39924976,72,39924976 10.5281/zenodo.345136,10.5281/zenodo.596467,1,software,https://github.com/esthervankleef/Two_strain_model_published,1,0,"{""R"": 87295}",MIT License,0,2,[],0,1,51,11,8,109,146,285510981,55,21467 10.5281/zenodo.345140,,1,software,https://github.com/mariutzica/Paper-of-the-Future-Content,0,0,"{""Jupyter Notebook"": 1702181, ""Python"": 17404}",MIT License,0,3,[],0,0,5,0,0,5,5,0,5,0 10.5281/zenodo.345188,10.5281/zenodo.596860,1,software,https://github.com/tlnagy/Crispulator.jl,2,1,"{""Jupyter Notebook"": 796699, ""Julia"": 95651}",Other,10,2,"[functional-genomics, julia, simulation, genomics]",10,1,7,16,3,9,9,6077542,7,269894 10.5281/zenodo.34530,,1,dataset,,7,,,,,,,,7,183,7,7,183,184,21036666,184,21036666 10.5281/zenodo.345364,,1,dataset,,1,,,,,,,,1,14,1,1,14,14,2613056966,14,2613056966 10.5281/zenodo.345396,10.5281/zenodo.596163,1,software,https://github.com/LozRiviera/COMPASS_paper,3,0,"{""Jupyter Notebook"": 3654915, ""Processing"": 5096, ""Arduino"": 4222}",Other,0,1,[],0,3,37,14,11,79,90,92112634,40,19978686 10.5281/zenodo.345411,,1,dataset,https://github.com/JoaoPauloAires/norm-dataset,4,0,{},,2,1,[],2,4,89,4,4,89,98,1364048,98,1364048 10.5281/zenodo.345413,,1,software,https://github.com/mrkrd/cochlear_nucleus,0,0,"{""Python"": 25194, ""AMPL"": 23657, ""Makefile"": 43}",GNU General Public License v3.0,1,1,"[computational-neuroscience, globular-bushy-cells, cochlear-nuclues, model, neuron, brian, python, endbulb-of-held, synapse, plasticity, synaptic-depression]",1,0,8,0,0,8,8,0,8,0 10.5281/zenodo.345791,,1,dataset,,5,,,,,,,,5,13,5,5,13,13,172965,13,172965 10.5281/zenodo.345944,10.5281/zenodo.600657,1,dataset,,20,,,,,,,,13,196,20,13,196,202,1338526300,202,1338526300 10.5281/zenodo.345970,10.5281/zenodo.593107,1,software,https://github.com/BU-hammerTeam/PyHammer,0,9,"{""Python"": 152084}",MIT License,17,12,"[spectral-types, metallicity, python, spectral-lines]",17,0,9,0,0,22,24,0,10,0 10.5281/zenodo.345978,,1,publication,,20,,,,,,,,17,32,20,17,32,36,2124031209,36,2124031209 10.5281/zenodo.345981,,1,software,https://github.com/kieranrcampbell/mfa,1,3,"{""R"": 36151, ""C++"": 23483}",,5,5,"[single-cell, bifurcation, factor-analysis, mixture-modelling]",5,1,53,1,1,53,55,31771,55,31771 10.5281/zenodo.345982,,1,software,https://github.com/migueldvb/cine,0,1,"{""Python"": 28390, ""TeX"": 5750}",MIT License,4,1,"[python, astronomy, science, comets]",4,0,3,0,0,3,3,0,3,0 10.5281/zenodo.34602,,1,software,https://github.com/nupic-community/comportex,0,23,"{""Clojure"": 269725, ""HTML"": 2004}",,140,29,[],140,0,28,0,0,28,28,0,28,0 10.5281/zenodo.34624,,1,poster,,53,,,,,,,,53,11,53,53,11,11,25194292,11,25194292 10.5281/zenodo.34843,,1,dataset,,4,,,,,,,,1,38,4,1,38,38,62558490,38,62558490 10.5281/zenodo.34848,,1,software,https://github.com/dimus/gbifparser,0,0,"{""Scala"": 3493}",,0,1,[],0,0,14,0,0,14,14,0,14,0 10.5281/zenodo.34933,10.5281/zenodo.594347,1,software,https://github.com/brwnj/umitools,1,7,"{""Python"": 21080}",MIT License,28,5,[],28,1,57,1,1,66,70,9661,60,9661 10.5281/zenodo.34939,,1,dataset,,47,,,,,,,,24,186,47,24,186,198,30000060399,198,30000060399 10.5281/zenodo.35028,,1,software,https://github.com/stchepanhagn/normmas-sim,0,0,"{""Java"": 38962}",The Unlicense,0,1,[],0,0,6,0,0,6,6,0,6,0 10.5281/zenodo.35083,,1,software,https://github.com/jnkather/new-colors-histology,10,0,"{""MATLAB"": 16845}",MIT License,1,1,[],1,10,118,10,10,118,118,1818579440,118,1818579440 10.5281/zenodo.35091,,1,software,https://github.com/jnkather/new-colors-histology-website,2,1,"{""JavaScript"": 707917, ""CSS"": 3767, ""HTML"": 945}",MIT License,1,1,[],1,2,52,2,2,52,52,14742264,52,14742264 10.5281/zenodo.35123,,1,software,https://github.com/F1000Research/tximport,20,0,"{""R"": 10547}",,1,1,[],1,18,244,20,18,244,249,254340,249,254340 10.5281/zenodo.35227,,1,software,https://github.com/F1000Research/FlyOde,0,0,"{""PHP"": 193419, ""HTML"": 118271, ""JavaScript"": 31664, ""CSS"": 18401}",MIT License,0,1,[],0,0,11,0,0,11,11,0,11,0 10.5281/zenodo.35265,,1,software,https://github.com/mrtommyb/ktransit,3,21,"{""Fortran"": 66107, ""Python"": 33441}",GNU General Public License v3.0,46,12,[],46,3,168,3,3,168,176,922275,176,922275 10.5281/zenodo.35283,,1,software,https://github.com/222464/NeoRL,0,6,"{""C++"": 437560, ""C"": 108376, ""CMake"": 10300}",Other,69,11,[],69,0,17,0,0,17,17,0,17,0 10.5281/zenodo.35293,10.5281/zenodo.592722,1,software,https://github.com/andsor/pyfssa,1,6,"{""Python"": 65773, ""Shell"": 357}",ISC License,9,5,[],9,1,71,1,1,87,112,1336056,83,1336056 10.5281/zenodo.35341,,1,software,https://github.com/Stefan-Meyer-Institut/waveformlibrary,0,1,"{""C++"": 131731, ""Makefile"": 2016, ""Hack"": 572}",,0,8,[],0,0,9,0,0,9,9,0,9,0 10.5281/zenodo.35375,,1,dataset,,8,,,,,,,,1,33,8,1,33,33,17815007,33,17815007 10.5281/zenodo.35386,,1,software,https://github.com/F1000Research/CyAnimator,1,0,"{""Java"": 260589}",,0,1,[],0,1,7,1,1,7,7,93535,7,93535 10.5281/zenodo.35390,10.5281/zenodo.593109,1,software,https://github.com/ftalbrecht/dune-stuff,2,0,"{""C++"": 2333119, ""CMake"": 51119, ""Python"": 4082, ""Shell"": 2033, ""TeX"": 669}",Other,0,1,[],0,2,13,2,2,18,18,1108536,13,1108536 10.5281/zenodo.35393,,1,software,https://github.com/EnvironmentOntology/envo-habitats,0,0,"{""Prolog"": 403268, ""Makefile"": 528, ""Perl"": 94}",,1,2,[],1,0,16,0,0,16,16,0,16,0 10.5281/zenodo.35415,,1,software,https://github.com/NLeSC/Xenon,3,13,"{""Java"": 1527390, ""Shell"": 4009, ""Batchfile"": 762}",Apache License 2.0,24,7,"[java, batch-job, middleware, library]",24,3,54,3,3,54,57,60828534,57,60828534 10.5281/zenodo.35422,10.5281/zenodo.594353,1,software,https://github.com/uoregon-postlethwait/prost,6,0,"{""Python"": 392494, ""Shell"": 641}",Other,3,4,[],3,5,18,101,30,121,166,158324594,18,673044 10.5281/zenodo.35440,10.5281/zenodo.594213,1,software,https://github.com/thorstenwagner/ij-ridgedetection,6,12,"{""Java"": 311391, ""Shell"": 121}",GNU General Public License v2.0,16,11,"[detect-ridges, imagej, fiji]",16,4,94,65,54,712,787,6834433,94,614016 10.5281/zenodo.35447,,1,software,https://github.com/F1000Research/WebApplication,0,0,"{""JavaScript"": 715546, ""CSS"": 294002, ""HTML"": 7192, ""PowerShell"": 187}",,0,1,[],0,0,31,0,0,31,31,0,31,0 10.5281/zenodo.35461,10.5281/zenodo.594353,1,software,https://github.com/uoregon-postlethwait/prost,8,0,"{""Python"": 392494, ""Shell"": 641}",Other,3,4,[],3,7,22,101,30,121,166,158324594,23,897896 10.5281/zenodo.35536,10.5281/zenodo.594058,1,software,https://github.com/RiceMunk/omnifit,,4,"{""Python"": 158335}","BSD 3-Clause ""New"" or ""Revised"" License",3,2,[],3,,,,,,,,, 10.5281/zenodo.35566,10.5281/zenodo.594268,1,software,https://github.com/nschorgh/Planetary-Code-Collection,1,3,"{""Fortran"": 384387, ""Makefile"": 9993, ""MATLAB"": 4981, ""Shell"": 386, ""Perl"": 25}",,5,1,"[planetary-surfaces, exosphere-models, ice-evolution-models, self-heating, mars, moon, mauna-kea, vapor-diffusion, thermal-models]",5,1,14,8,4,135,153,13372313,15,228735 10.5281/zenodo.35584,,1,dataset,,0,,,,,,,,0,19,0,0,19,19,0,19,0 10.5281/zenodo.35611,,1,software,https://github.com/F1000Research/causaltrail,0,0,"{""C++"": 443671, ""CMake"": 4781}",GNU General Public License v3.0,0,1,[],0,0,35,0,0,35,35,0,35,0 10.5281/zenodo.35664,,1,software,,0,,,,,,,,0,16,0,0,16,16,0,16,0 10.5281/zenodo.35667,,1,dataset,,2,,,,,,,,2,30,2,2,30,30,716217934,30,716217934 10.5281/zenodo.35680,,1,software,https://github.com/ctn-archive/technical-reports,1,1,"{""Jupyter Notebook"": 950464}",,2,19,[],2,1,472,1,1,472,494,667664,494,667664 10.5281/zenodo.35770,10.5281/zenodo.592403,1,software,https://github.com/GNilsonne/Endotoxin_RestingState_2015,0,0,"{""R"": 59667}",,0,1,[],0,0,4,0,0,5,5,0,4,0 10.5281/zenodo.375591,10.5281/zenodo.594587,1,software,https://github.com/flav-io/flavio,11,19,"{""Python"": 1025564, ""Makefile"": 54358}",MIT License,29,8,"[flavour-physics, python, hep, physics, high-energy-physics, particle-physics, eft]",29,8,35,431,35,629,728,294614165,36,7912487 10.5281/zenodo.375593,,1,software,https://github.com/DavidMStraub/paper-bvgamma-ps,0,0,"{""Jupyter Notebook"": 291057}",MIT License,0,1,[],0,0,24,0,0,24,25,0,25,0 10.5281/zenodo.375632,,1,dataset,,2,,,,,,,,2,43,2,2,43,46,13538304,46,13538304 10.5281/zenodo.375830,,1,publication,,62,,,,,,,,60,426,62,60,426,433,1319360,433,1319360 10.5281/zenodo.375922,10.5281/zenodo.593550,1,software,https://github.com/welcheb/Thermoesthesia_GUI,2,2,"{""MATLAB"": 19300}",MIT License,0,2,[],0,1,9,12,3,12,12,7141252,9,326298 10.5281/zenodo.375923,,1,software,https://github.com/lennes/spect,9,5,"{""HTML"": 101924}",GNU General Public License v3.0,17,1,"[praat, speech, analysis, annotation, corpus-linguistics, corpus-tools, speech-analysis, conversational-speech, transcription, transcript, spoken-language, spect, speech-corpus]",17,9,182,9,9,182,198,1919412,198,1919412 10.5281/zenodo.376277,10.5281/zenodo.596388,1,software,https://github.com/ligo-cbc/pycbc,15,178,"{""Python"": 4701332, ""Shell"": 123435, ""HTML"": 19675, ""C"": 5058, ""JavaScript"": 4571, ""Dockerfile"": 3115, ""CSS"": 2861}",GNU General Public License v3.0,136,45,"[astronomy, physics, gravity, ligo, gravitational-waves, pycbc, analysis, python, black-hole, neutron-star, gwastro, virgo, signal-processing, open-science]",136,10,3,1068,53,1142,1441,12433542610,3,135962010 10.5281/zenodo.376348,,1,publication,,5,,,,,,,,4,19,5,4,19,19,3377415,19,3377415 10.5281/zenodo.376573,,1,dataset,,16,,,,,,,,9,89,16,9,89,93,948364885,93,948364885 10.5281/zenodo.376619,,1,software,,6,,,,,,,,3,68,6,3,68,68,32844,68,32844 10.5281/zenodo.376620,,1,software,,0,,,,,,,,0,84,0,0,84,85,0,85,0 10.5281/zenodo.376623,10.5281/zenodo.594297,1,software,https://github.com/Christensen-Lab-Dartmouth/brca_lowstage_DMGRs,37,3,"{""R"": 226997, ""Shell"": 8628, ""Python"": 3103}","BSD 3-Clause ""New"" or ""Revised"" License",4,2,[],4,10,13,37,10,26,26,18128628151,13,18128628151 10.5281/zenodo.376654,10.5281/zenodo.789230,1,publication,,0,,,,,,,,0,14,0,0,14,15,0,15,0 10.5281/zenodo.376663,10.5281/zenodo.596502,1,software,https://github.com/ha0ye/rEDM,2,2,"{""R"": 152339, ""C++"": 65617, ""TeX"": 33994}",Other,25,3,[],25,2,36,18,12,254,302,40330948,37,5902038 10.5281/zenodo.376667,10.5281/zenodo.640046,1,software,,5,,,,,,,,5,30,10,7,56,62,3385723,31,778750 10.5281/zenodo.376786,10.5281/zenodo.596323,1,software,https://github.com/caramanning/calcGOP,1,0,"{""MATLAB"": 53413}",Apache License 2.0,0,2,[],0,1,38,1,1,38,40,25844,40,25844 10.5281/zenodo.376996,10.5281/zenodo.599120,1,software,,133,,,,,,,,119,29,133,119,29,29,220878675,29,220878675 10.5281/zenodo.376999,,1,dataset,,2,,,,,,,,2,33,2,2,33,33,1025860028,33,1025860028 10.5281/zenodo.377007,,1,dataset,,7,,,,,,,,7,25,7,7,25,25,3203452,25,3203452 10.5281/zenodo.377033,10.5281/zenodo.597028,1,software,https://github.com/opensciencegrid/StashCache,0,12,"{""Python"": 32471, ""Shell"": 8347}",Apache License 2.0,1,8,[],1,0,19,5,2,34,44,1378105,19,0 10.5281/zenodo.377055,10.5281/zenodo.594972,1,software,https://github.com/NCBI-Hackathons/rnaseqview,3,9,"{""JavaScript"": 68764, ""Python"": 13815, ""HTML"": 10602, ""Perl"": 4130, ""CSS"": 1533, ""Shell"": 64}",Creative Commons Zero v1.0 Universal,24,11,[],24,3,52,3,3,57,58,15966132,53,15966132 10.5281/zenodo.398804,,1,software,https://github.com/owlcs/miro,0,4,{},Apache License 2.0,4,9,[],4,0,11,0,0,11,11,0,11,0 10.5281/zenodo.398822,,1,software,https://github.com/clason/nlpdegm,7,1,"{""MATLAB"": 13111}",,0,1,[],0,7,30,7,7,30,32,52234,32,52234 10.5281/zenodo.398831,10.5281/zenodo.599918,1,dataset,,11,,,,,,,,11,53,11,11,53,55,2540626,55,2540626 10.5281/zenodo.398847,,1,software,https://github.com/KPratherLab/FATESmatlabToolKit,5,0,"{""MATLAB"": 547835, ""C"": 7235}",,0,3,[],0,5,23,5,5,23,23,149118815,23,149118815 10.5281/zenodo.399052,10.5281/zenodo.596216,1,software,https://github.com/macarthur-lab/clinvar,1,48,"{""Python"": 68989}",Other,103,43,[],103,1,73,10,10,203,211,1952831104,76,201304555 10.5281/zenodo.399209,,1,publication,,41,,,,,,,,36,1228,41,36,1228,1289,50925034,1289,50925034 10.5281/zenodo.399256,10.5281/zenodo.603103,1,dataset,,1,,,,,,,,1,32,1,1,32,39,46694400,39,46694400 10.5281/zenodo.399302,,1,presentation,,34,,,,,,,,32,41,34,32,41,41,12120592,41,12120592 10.5281/zenodo.399474,,1,dataset,,66,,,,,,,,51,89,66,51,89,91,7734692085,91,7734692085 10.5281/zenodo.399475,,1,software,,1,,,,,,,,1,33,1,1,33,34,10821284895,34,10821284895 10.5281/zenodo.399501,10.5281/zenodo.598369,1,software,https://github.com/doaa-altarawy/Expresso,1,1,"{""PHP"": 62068, ""Python"": 11733, ""Shell"": 299}",MIT License,1,2,[],1,1,17,1,1,21,21,12723684,17,12723684 10.5281/zenodo.399503,,1,publication,,11,,,,,,,,9,15,11,9,15,17,4572557,17,4572557 10.5281/zenodo.400020,10.5281/zenodo.597655,1,software,https://github.com/Kalirad/spiraling_complexity,0,1,"{""Jupyter Notebook"": 1833807, ""Python"": 45535}",,0,2,[],0,0,3,0,0,9,9,0,3,0 10.5281/zenodo.400269,,1,publication,,1,,,,,,,,1,11,1,1,11,11,50774865,11,50774865 10.5281/zenodo.400437,,1,software,,10,,,,,,,,10,37,10,10,37,38,125290,38,125290 10.5281/zenodo.400486,10.5281/zenodo.601496,1,software,,35,,,,,,,,17,67,186,91,260,293,8974941,72,1655383 10.5281/zenodo.400606,,1,software,https://github.com/evoldoers/wtfgenes,0,1,"{""JavaScript"": 405634, ""C++"": 59535, ""HTML"": 26968, ""CSS"": 10128, ""Makefile"": 6773, ""C"": 3054, ""Shell"": 135}","BSD 3-Clause ""New"" or ""Revised"" License",21,3,[],21,0,8,0,0,8,8,0,8,0 10.5281/zenodo.400608,,1,software,https://github.com/ihh/wtfgenes-paper,0,1,"{""TeX"": 33975, ""Makefile"": 3338, ""R"": 1052}",,0,1,[],0,0,7,0,0,7,8,0,8,0 10.5281/zenodo.400615,,1,dataset,,286,,,,,,,,79,230,286,79,230,248,434061085148,248,434061085148 10.5281/zenodo.400950,,1,publication,,360,,,,,,,,30,55,360,30,55,57,12230599548,57,12230599548 10.5281/zenodo.400951,,1,software,https://github.com/blasseigne/ProliferativeIndex,0,0,"{""R"": 5996}",Other,0,1,"[r, package, gene-expression, index, metagene, cancer-genomics, cancer, genomics]",0,0,3,0,0,3,3,0,3,0 10.5281/zenodo.400977,10.5281/zenodo.592535,1,software,https://github.com/ecohealthalliance/pubcrawler,7,1,"{""Jupyter Notebook"": 1258691, ""Python"": 22743}",Apache License 2.0,2,9,[],2,6,45,7,6,67,70,2115785,48,2115785 10.5281/zenodo.400978,10.5281/zenodo.592603,1,software,https://github.com/ecohealthalliance/hotspots2,13,0,"{""R"": 218191}",Apache License 2.0,4,8,[],4,13,142,13,13,144,148,109882084,146,109882084 10.5281/zenodo.401029,,1,publication,,537,,,,,,,,397,917,537,397,917,996,1489154610,996,1489154610 10.5281/zenodo.401036,,1,software,,13,,,,,,,,13,28,13,13,28,29,131985165,29,131985165 10.5281/zenodo.401040,,1,software,https://github.com/varennes/particletrack,2,0,"{""Fortran"": 69618, ""Python"": 3456}",MIT License,0,1,[],0,2,28,2,2,28,28,32256,28,32256 10.5281/zenodo.401057,,1,software,,12,,,,,,,,12,46,12,12,46,50,76356960,50,76356960 10.5281/zenodo.401058,,1,software,,0,,,,,,,,0,11,0,0,11,12,0,12,0 10.5281/zenodo.401060,,1,dataset,,3,,,,,,,,2,5,3,2,5,5,11441424,5,11441424 10.5281/zenodo.420034,10.5281/zenodo.594191,1,software,https://github.com/Parallel-in-Time/pySDC,2,9,"{""Python"": 1733889, ""Shell"": 5555}","BSD 2-Clause ""Simplified"" License",10,10,"[parallel-in-time, python, iterative-methods, parallel-computing, partial-differential-equations, ordinary-differential-equations, collocation-method, multigrid, pfasst, spectral-deferred-corrections]",10,1,7,24,7,57,77,43119494,13,4337786 10.5281/zenodo.42262,,1,software,,3,,,,,,,,3,9,3,3,9,10,1975083,10,1975083 10.5281/zenodo.42663,,1,software,,14,,,,,,,,12,82,14,12,82,86,269808,86,269808 10.5281/zenodo.42702,,1,software,,8,,,,,,,,7,62,8,7,62,64,150976,64,150976 10.5281/zenodo.437120,10.5281/zenodo.792545,1,publication,,15,,,,,,,,14,18,15,14,18,20,7833675,20,7833675 10.5281/zenodo.437136,,1,dataset,,1,,,,,,,,1,23,1,1,23,24,6828,24,6828 10.5281/zenodo.437473,,1,software,,52,,,,,,,,19,60,52,19,60,65,11647093,65,11647093 10.5281/zenodo.437797,,1,publication,,148,,,,,,,,133,16,148,133,16,16,744339360,16,744339360 10.5281/zenodo.437886,10.5281/zenodo.597694,1,software,https://github.com/khufkens/daymetr,4,9,"{""R"": 61784}",GNU Affero General Public License v3.0,5,3,[],5,3,36,13,10,75,77,610166,37,161768 10.5281/zenodo.437903,10.5281/zenodo.597138,1,software,,1,,,,,,,,1,14,1,1,14,14,257743,14,257743 10.5281/zenodo.437933,,1,dataset,,81,,,,,,,,57,132,81,57,132,135,410807603,135,410807603 10.5281/zenodo.438015,,1,dataset,,0,,,,,,,,0,20,0,0,20,20,0,20,0 10.5281/zenodo.438046,,1,software,,0,,,,,,,,0,3,0,0,3,3,0,3,0 10.5281/zenodo.438140,,1,publication,,0,,,,,,,,0,11,0,0,11,11,0,11,0 10.5281/zenodo.438142,10.5281/zenodo.598285,1,software,https://github.com/achatwin/CosmicEquilibration,0,0,{},GNU General Public License v3.0,0,0,[],0,0,4,0,0,6,6,0,4,0 10.5281/zenodo.438156,10.5281/zenodo.591485,1,software,https://github.com/konrad/COVERnant,1,0,{},,0,1,[],0,1,31,1,1,68,72,20196,31,20196 10.5281/zenodo.438204,,1,software,,0,,,,,,,,0,9,0,0,9,9,0,9,0 10.5281/zenodo.438300,10.5281/zenodo.598380,1,software,https://github.com/mbakker7/swi_solutions,3,1,"{""Jupyter Notebook"": 823086, ""Python"": 15009}",MIT License,0,1,[],0,3,36,4,4,50,50,967196,36,815208 10.5281/zenodo.438337,10.5281/zenodo.592119,1,software,https://github.com/biocaddie/WG3-MetadataSpecifications,20,11,"{""Python"": 6643}",,21,35,"[data-discovery, dats-model, data-modeling, json-schemas, json-ld, schema-org]",21,19,258,44,38,896,1010,238354936,265,181085040 10.5281/zenodo.438344,,1,software,https://github.com/NCBI-Hackathons/DangerTrack,0,,,,,,,,0,14,0,0,14,14,0,14,0 10.5281/zenodo.438351,10.5281/zenodo.594587,1,software,https://github.com/flav-io/flavio,9,19,"{""Python"": 1025564, ""Makefile"": 54358}",MIT License,29,8,"[flavour-physics, python, hep, physics, high-energy-physics, particle-physics, eft]",29,7,49,431,35,629,728,294614165,51,6559299 10.5281/zenodo.438352,10.5281/zenodo.793392,1,software,,0,,,,,,,,0,59,9,9,121,170,216204,69,0 10.5281/zenodo.438509,10.5281/zenodo.597734,1,software,https://github.com/scottgigante/picopore,0,4,"{""Python"": 47023}",GNU General Public License v3.0,30,4,[],30,0,1,0,0,36,37,0,1,0 10.5281/zenodo.438621,10.5281/zenodo.793055,1,dataset,,2,,,,,,,,2,2,8,8,33,35,141063972,2,31104264 10.5281/zenodo.438664,10.5281/zenodo.594898,1,software,https://github.com/PGB-LIV/neo-pep-tool,0,0,"{""Java"": 80867}",MIT License,0,5,[],0,0,11,0,0,11,12,0,12,0 10.5281/zenodo.438681,,1,dataset,,9,,,,,,,,9,89,9,9,89,92,22276071,92,22276071 10.5281/zenodo.438697,,1,dataset,,2,,,,,,,,1,9,2,1,9,9,30485210747,9,30485210747 10.5281/zenodo.438705,10.5281/zenodo.598181,1,software,https://github.com/geodynamics/pylith,2,31,"{""C++"": 6933408, ""Python"": 1960369, ""Makefile"": 162001, ""Shell"": 33582, ""C"": 33202, ""M4"": 16484, ""GLSL"": 5595, ""TeX"": 3415}",MIT License,54,20,[],54,2,88,47,38,474,563,850213063,121,31465516 10.5281/zenodo.438711,,1,dataset,,2,,,,,,,,1,7,2,1,7,7,30490611379,7,30490611379 10.5281/zenodo.438943,,1,dataset,,3,,,,,,,,2,13,3,2,13,14,30490040482,14,30490040482 10.5281/zenodo.438976,,1,software,https://github.com/EpigenomeClock/MouseEpigeneticClock,2,5,"{""HTML"": 716065, ""R"": 5480}",GNU General Public License v2.0,5,3,[],5,2,23,2,2,23,23,231928952,23,231928952 10.5281/zenodo.438997,,1,dataset,,6,,,,,,,,3,17,6,3,17,17,60988443604,17,60988443604 10.5281/zenodo.439066,,1,dataset,,5,,,,,,,,4,36,5,4,36,38,7190071034,38,7190071034 10.5281/zenodo.439080,,1,dataset,,8,,,,,,,,4,37,8,4,37,38,8671639276,38,8671639276 10.5281/zenodo.439090,10.5281/zenodo.596367,1,software,https://github.com/RaphaelCouronne/IBE_Benchmark-OpenML,8,1,"{""R"": 161882}",,2,2,[],2,8,45,9,9,52,62,180757520,51,157657736 10.5281/zenodo.439138,,1,publication,,30,,,,,,,,25,61,30,25,61,67,27559800,67,27559800 10.5281/zenodo.439351,,1,software,https://github.com/anamud/mir-dev,0,1,"{""C"": 242985, ""R"": 88476, ""C++"": 74005, ""Python"": 39930, ""Shell"": 12031, ""Makefile"": 676}",Apache License 2.0,1,5,"[openmp, profiling, runtime-system, tasks]",1,0,2,0,0,2,2,0,2,0 10.5281/zenodo.439355,,1,software,https://github.com/anamud/grain-graphs,1,1,"{""R"": 63618, ""Shell"": 8429}",Apache License 2.0,2,4,"[grain-graphs, openmp, parallel-computing, performance-analysis, performance-visualization]",2,1,7,1,1,7,7,910648,7,910648 10.5281/zenodo.439373,10.5281/zenodo.596530,1,software,https://github.com/askhamwhat/dmd-varpro-paper-examples,14,0,"{""C"": 86772, ""MATLAB"": 57508}",,0,1,[],0,14,88,14,14,93,96,926184,91,926184 10.5281/zenodo.439385,10.5281/zenodo.596861,1,software,https://github.com/duqbo/optdmd,12,0,"{""MATLAB"": 37844}",,1,1,[],1,12,84,16,16,109,118,724740,89,437016 10.5281/zenodo.439391,,1,software,https://github.com/mdscheuerell/muti,28,4,"{""R"": 13643}",,3,1,"[mutual-information, entropy, time-series]",3,28,419,28,28,419,456,9924488,456,9924488 10.5281/zenodo.439394,,1,software,https://github.com/vincentdumont/qsosim,0,,,,,,,,0,10,0,0,10,11,0,11,0 10.5281/zenodo.439419,,1,software,,2,,,,,,,,2,22,2,2,22,24,866596,24,866596 10.5281/zenodo.439517,10.5281/zenodo.597061,1,software,https://github.com/J35P312/TIDDIT,2,0,"{""C++"": 1027574, ""Python"": 38909, ""CMake"": 13338, ""C"": 3584}",Other,5,1,[],5,1,4,39,3,11,13,27532808,4,1407790 10.5281/zenodo.439529,,1,software,,20,,,,,,,,19,132,20,19,132,138,225036280,138,225036280 10.5281/zenodo.439689,,1,dataset,,14,,,,,,,,3,15,14,3,15,15,770537844,15,770537844 10.5281/zenodo.439690,,1,software,https://github.com/MaximeMaW/CompressedSensingMicroscopy3D,0,1,"{""Jupyter Notebook"": 17729444, ""Python"": 19594}",,4,2,[],4,0,8,0,0,8,9,0,9,0 10.5281/zenodo.439711,10.5281/zenodo.602349,1,dataset,,0,,,,,,,,0,12,0,0,12,12,0,12,0 10.5281/zenodo.439738,,1,software,,0,,,,,,,,0,17,0,0,17,17,0,17,0 10.5281/zenodo.439977,10.5281/zenodo.597569,1,software,https://github.com/apetkau/snvphyl-validations,1,1,"{""Perl"": 43201, ""R"": 7750, ""Shell"": 3095}",,2,1,[],2,1,11,1,1,22,23,10623445,12,10623445 10.5281/zenodo.44216,,1,software,https://github.com/FulweilerLab/NarragansettBayN2,0,1,"{""R"": 5936}",,0,3,[],0,0,7,0,0,7,7,0,7,0 10.5281/zenodo.44285,,1,software,https://github.com/birdave/Gel-Image-Segmentation,1,0,"{""MATLAB"": 22721}",MIT License,0,1,[],0,1,25,1,1,25,27,13055,27,13055 10.5281/zenodo.44291,,1,software,https://github.com/kyleniemeyer/cf_expm,0,0,"{""C"": 13377, ""Makefile"": 884}",Other,0,1,[],0,0,8,0,0,8,8,0,8,0 10.5281/zenodo.44331,,1,publication,,40,,,,,,,,36,118,40,36,118,122,15377320,122,15377320 10.5281/zenodo.44336,,1,software,https://github.com/kyleniemeyer/create_rate_subs,30,2,"{""Python"": 170693}",Other,5,3,[],5,24,7529,30,24,7529,8774,974952,8774,974952 10.5281/zenodo.44342,10.5281/zenodo.592325,1,software,https://github.com/DomBennett/TaxonNamesResolver,0,3,"{""Python"": 62285}",GNU General Public License v2.0,5,2,[],5,0,6,0,0,13,13,0,6,0 10.5281/zenodo.44361,,1,publication,,25,,,,,,,,25,70,25,25,70,72,103557775,72,103557775 10.5281/zenodo.44485,,1,software,https://github.com/pmmarek/Permutation-Test,0,0,"{""Visual Basic"": 222136}",,0,1,[],0,0,24,0,0,24,25,0,25,0 10.5281/zenodo.44529,,1,dataset,,465,,,,,,,,349,505,465,349,505,555,40800000705,555,40800000705 10.5281/zenodo.44593,,1,dataset,,27,,,,,,,,24,81,27,24,81,88,451005759,88,451005759 10.5281/zenodo.44598,,1,software,https://github.com/astrofle/CRRLpy,0,0,"{""Python"": 282411}",MIT License,1,1,[],1,0,4,0,0,4,4,0,4,0 10.5281/zenodo.44626,,1,dataset,,3,,,,,,,,3,14,3,3,14,16,1330438269,16,1330438269 10.5281/zenodo.44627,10.5281/zenodo.591746,1,software,https://github.com/ComputationalRadiationPhysics/picongpu,2,141,"{""C++"": 3429595, ""Shell"": 249722, ""Python"": 151958, ""CMake"": 63536, ""Dockerfile"": 4852, ""Awk"": 2245, ""Gnuplot"": 1136}",Other,350,49,"[laser, plasma, physics, gpu, physics-simulation, gpu-computing, particle-accelerator, particle-in-cell, pic, research]",350,1,25,48,11,342,429,150452842,25,3897280 10.5281/zenodo.44649,,1,publication,,2,,,,,,,,2,6,2,2,6,6,746306,6,746306 10.5281/zenodo.44668,10.5281/zenodo.596066,1,software,https://github.com/greenelab/TDMresults,1,4,"{""R"": 102239, ""Python"": 7454}","BSD 3-Clause ""New"" or ""Revised"" License",5,2,[],5,1,29,9,9,84,100,2522271,29,1870599 10.5281/zenodo.44678,,1,software,https://github.com/jimsalterjrs/blindanalysis,1,1,"{""Perl"": 2904}",GNU General Public License v3.0,3,1,[],3,1,43,1,1,43,43,15464,43,15464 10.5281/zenodo.44701,10.5281/zenodo.593535,1,software,https://github.com/allenpope/Landsat8_SupraglacialLakes,2,7,"{""MATLAB"": 176374}",Other,1,1,[],1,2,20,3,3,47,47,985069,20,577256 10.5281/zenodo.44709,,1,publication,,9,,,,,,,,9,16,9,9,16,16,2538324,16,2538324 10.5281/zenodo.44732,10.5281/zenodo.593633,1,software,https://github.com/tpmc/tpmc-test,0,0,"{""C++"": 57314, ""CMake"": 6638, ""Scilab"": 668}",Other,0,2,[],0,0,13,2,2,19,22,59550,13,0 10.5281/zenodo.44766,10.5281/zenodo.594537,1,software,https://github.com/MTMurphy77/UVES_headsort,0,0,"{""C"": 168276, ""Shell"": 36914, ""C++"": 11796, ""Makefile"": 4759, ""Python"": 1365}",,1,3,[],1,0,11,0,0,21,24,0,12,0 10.5281/zenodo.44884,,1,dataset,,106,,,,,,,,82,152,106,82,152,161,28327100150,161,28327100150 10.5281/zenodo.44898,,1,publication,,17,,,,,,,,17,37,17,17,37,39,91473345,39,91473345 10.5281/zenodo.45022,,1,software,https://github.com/yabata/pyrenn,33,28,"{""MATLAB"": 59220, ""Python"": 47534}",GNU General Public License v3.0,53,12,[],53,31,263,33,31,263,277,57220119,277,57220119 10.5281/zenodo.45036,10.5281/zenodo.597186,1,software,https://github.com/GlobalNamesArchitecture/gn_uuid,0,0,"{""Ruby"": 5902, ""Shell"": 115}",MIT License,1,3,[],1,0,15,0,0,18,19,0,15,0 10.5281/zenodo.45038,,1,software,https://github.com/GlobalNamesArchitecture/biodiversity,0,4,"{""Ruby"": 385075}",MIT License,26,10,[],26,0,49,0,0,49,49,0,49,0 10.5281/zenodo.45039,10.5281/zenodo.593063,1,software,https://github.com/mhwombat/som,0,0,"{""Haskell"": 84735, ""Nix"": 1577}",Other,15,4,[],15,0,12,0,0,23,23,0,12,0 10.5281/zenodo.45040,10.5281/zenodo.593059,1,software,https://github.com/mhwombat/exp-som-comparison,0,0,"{""Haskell"": 16642, ""Shell"": 2806}",GNU General Public License v3.0,0,1,[],0,0,6,0,0,10,10,0,6,0 10.5281/zenodo.45045,,1,software,https://github.com/lschneiderbauer/BProbe,8,0,"{""Mathematica"": 75525, ""CSS"": 16036, ""M"": 4828, ""Shell"": 1658, ""Python"": 558, ""Ruby"": 186}",GNU General Public License v3.0,0,2,[],0,7,94,8,7,94,95,400592,95,400592 10.5281/zenodo.45054,10.5281/zenodo.594602,1,software,https://github.com/mpastell/Pweave,0,54,"{""Python"": 715381, ""TeX"": 6714, ""Jupyter Notebook"": 3730, ""Batchfile"": 236, ""Shell"": 36}",Other,291,18,"[python, reproducible-research, scientific-reports, jupyter, python3]",291,0,48,1,1,151,161,642679,48,0 10.5281/zenodo.45087,10.5281/zenodo.594468,1,software,https://github.com/QInfer/python-qinfer,0,26,"{""Python"": 565319}","BSD 3-Clause ""New"" or ""Revised"" License",60,19,"[python, statistics, quantum-information]",60,0,9,4,4,95,96,951588,9,0 10.5281/zenodo.45121,,1,software,https://github.com/emory-libraries-ecds/belfast-group-site,0,1,"{""Python"": 259008, ""HTML"": 254837, ""JavaScript"": 53647, ""CSS"": 26647}",,4,18,[],4,0,32,0,0,32,37,0,37,0 10.5281/zenodo.45136,10.5281/zenodo.592766,1,software,https://github.com/UV-CDAT/uvcdat,1,55,"{""Fortran"": 2711721, ""Python"": 2397503, ""CMake"": 530046, ""C"": 386664, ""M4"": 37485, ""Shell"": 25400, ""Makefile"": 16739, ""CSS"": 13796, ""HTML"": 7746, ""C++"": 2067, ""Dockerfile"": 1201, ""Ruby"": 965, ""sed"": 731, ""Objective-C"": 216}",Other,123,33,[],123,1,101,17,14,666,719,866075540,101,127350339 10.5281/zenodo.45149,10.5281/zenodo.598073,1,software,https://github.com/erdc-cm/RAPIDpy,0,16,"{""Python"": 462106}","BSD 3-Clause ""New"" or ""Revised"" License",7,18,"[python, hydrology]",7,0,7,3,2,95,101,88150978,7,0 10.5281/zenodo.45159,10.5281/zenodo.598072,1,software,https://github.com/erdc-cm/spt_lsm_autorapid_process,0,2,"{""Python"": 89047, ""Shell"": 113}","BSD 3-Clause ""New"" or ""Revised"" License",1,19,[],1,0,5,0,0,10,10,0,5,0 10.5281/zenodo.45175,10.5281/zenodo.593351,1,software,https://github.com/Marcello-Sega/gromacs,0,3,"{""C"": 93138438, ""C++"": 5594385, ""TeX"": 1022438, ""Python"": 464766, ""Cuda"": 166525, ""Fortran"": 54957, ""Awk"": 32639, ""Shell"": 27590, ""Perl"": 25160, ""XSLT"": 23284, ""Objective-C"": 19762, ""CSS"": 11351, ""Scilab"": 1110, ""Ruby"": 54}",Other,1,2,[],1,0,28,1,1,60,61,31424851,28,0 10.5281/zenodo.45186,,1,software,https://github.com/hungyipu/Odyssey,3,3,"{""C++"": 17612, ""Cuda"": 10595, ""C"": 9286, ""Makefile"": 894, ""Gnuplot"": 176}",GNU General Public License v3.0,7,3,[],7,3,165,3,3,165,167,87714,167,87714 10.5281/zenodo.45197,,1,dataset,,0,,,,,,,,0,19,0,0,19,19,0,19,0 10.5281/zenodo.45210,,1,software,https://github.com/mattbarbour34/Genotype_Networks,0,0,"{""R"": 129039}",Other,6,1,[],6,0,24,0,0,24,25,0,25,0 10.5281/zenodo.45232,,1,dataset,,16,,,,,,,,8,25,16,8,25,27,2280890,27,2280890 10.5281/zenodo.45235,,1,software,https://github.com/fangohr/paper-supplement-ocaml-performance,0,2,"{""OCaml"": 6439, ""C++"": 4150, ""Makefile"": 1743}","BSD 2-Clause ""Simplified"" License",1,2,[],1,0,27,0,0,27,27,0,27,0 10.5281/zenodo.45238,10.5281/zenodo.594045,1,software,https://github.com/dpryan79/pyBigWig,6,18,"{""C"": 210020, ""C++"": 18435, ""Python"": 16283}",MIT License,88,7,"[bigwig, bioinfomatics, bigbed]",88,5,98,62,18,137,152,4280862,102,342300 10.5281/zenodo.45239,10.5281/zenodo.594175,1,software,https://github.com/mittinatten/freesasa,1,11,"{""C"": 629346, ""Shell"": 16798, ""M4"": 12866, ""Perl"": 8195, ""Yacc"": 2926, ""Makefile"": 2550, ""Lex"": 1127}",MIT License,31,9,"[c, bioinformatics, structural-biology, pdb]",31,1,33,11,9,269,280,8477606,33,769715 10.5281/zenodo.45254,10.5281/zenodo.593987,1,software,https://github.com/elzaguillot/Allele-Frequency-Spectrum-simulations,0,0,"{""Python"": 4356, ""R"": 3691, ""Shell"": 2711}",GNU General Public License v3.0,0,2,[],0,0,15,2,2,44,45,42288,15,0 10.5281/zenodo.45259,10.5281/zenodo.594457,1,software,https://github.com/jgomezdans/gp_emulator,2,10,"{""Jupyter Notebook"": 268373, ""Python"": 63058, ""Batchfile"": 80, ""Shell"": 64}",,4,3,[],4,1,27,17,7,59,72,341411061,27,1232148 10.5281/zenodo.45278,10.5281/zenodo.594078,1,software,https://github.com/dpryan79/libBigWig,2,11,"{""C"": 179268, ""Python"": 2728, ""Makefile"": 1986}",MIT License,38,6,"[bigbed, bigwig, bioinformatics]",38,2,44,33,6,60,63,13342811,44,750132 10.5281/zenodo.45282,10.5281/zenodo.593626,1,software,https://github.com/AASJournals/AASTeX60,0,21,"{""TeX"": 227817}",LaTeX Project Public License v1.3c,28,10,"[journals, manuscripts, astronomy, aastex, bibtex, citation]",28,0,9,5,5,67,80,6019798,9,0 10.5281/zenodo.45293,10.5281/zenodo.594531,1,software,https://github.com/dnicholson/gas_toolbox,1,0,"{""MATLAB"": 123482}",Other,0,2,[],0,1,15,6,6,63,72,1406942,15,213751 10.5281/zenodo.45296,,1,software,,11,,,,,,,,11,83,11,11,83,84,4021248,84,4021248 10.5281/zenodo.45298,,1,software,,14,,,,,,,,6,22,14,6,22,25,51451,25,51451 10.5281/zenodo.45311,,1,software,,34,,,,,,,,27,54,34,27,54,54,6375542,54,6375542 10.5281/zenodo.45363,,1,dataset,,34,,,,,,,,32,10,34,32,10,10,135922174,10,135922174 10.5281/zenodo.45402,,1,publication,,19,,,,,,,,18,48,19,18,48,49,11382387,49,11382387 10.5281/zenodo.45436,,1,dataset,,80,,,,,,,,75,261,80,75,261,265,22584725974,265,22584725974 10.5281/zenodo.45464,10.5281/zenodo.593933,1,software,https://github.com/ibab/root_pandas,10,28,"{""Python"": 32563, ""Shell"": 1046}",MIT License,90,11,[],90,5,3,112,11,163,176,215838796,3,114860 10.5281/zenodo.45465,10.5281/zenodo.591392,1,software,https://github.com/pymor/dune-gdt,0,6,"{""C++"": 1804168, ""Python"": 12016, ""CMake"": 8349, ""Shell"": 4685}",Other,3,5,"[dune, c-plus-plus, numerical-simulations]",3,0,0,0,0,6,6,0,0,0 10.5281/zenodo.45471,,1,software,https://github.com/carolinafishes/Federmanetal_2016,6,0,"{""R"": 11772}",,0,1,[],0,6,41,6,6,41,49,563100,49,563100 10.5281/zenodo.45488,10.5281/zenodo.594214,1,software,https://github.com/thorstenwagner/ij-nl-means,0,4,"{""Java"": 37613}",,7,5,"[denoising-images, fiji, imagej, image-denoising]",7,0,7,43,43,373,388,7266183,7,0 10.5281/zenodo.45513,,1,dataset,,2,,,,,,,,2,38,2,2,38,38,18935448,38,18935448 10.5281/zenodo.45514,,1,software,,0,,,,,,,,0,29,0,0,29,29,0,29,0 10.5281/zenodo.45521,,1,software,https://github.com/dhimmel/SIDER4,4,4,"{""Jupyter Notebook"": 20150}",Other,9,3,"[rephetio, side-effect, drug, compound, sider, sider4]",9,4,42,4,4,42,43,25359268,43,25359268 10.5281/zenodo.45524,,1,software,https://github.com/dhimmel/entrez-gene,1,1,"{""Jupyter Notebook"": 12382}",Other,0,2,"[entrez-gene, rephetio, hetionet, human, genes, terminology]",0,1,27,1,1,27,27,5890639,27,5890639 10.5281/zenodo.45527,,1,software,https://github.com/dhimmel/uberon,3,1,"{""Jupyter Notebook"": 22070}",,1,1,"[uberon, ontology, rephetio, hetionet, anatomy, tsv]",1,3,21,3,3,21,21,16251030,21,16251030 10.5281/zenodo.45543,10.5281/zenodo.594222,1,software,https://github.com/jeongchans/smrf,1,0,"{""Python"": 9313}",MIT License,0,1,[],0,1,14,3,3,31,34,25422,16,8110 10.5281/zenodo.45559,,1,software,https://github.com/oscar-guadayol/trackbac,4,0,"{""MATLAB"": 143544}",Other,0,1,[],0,4,61,4,4,61,66,263072,66,263072 10.5281/zenodo.45575,,1,software,https://github.com/rbnvrw/semtracking,1,0,"{""Python"": 111295}",MIT License,0,1,[],0,1,10,1,1,10,10,39605,10,39605 10.5281/zenodo.45579,,1,software,https://github.com/dhimmel/drugbank,110,23,"{""HTML"": 1099277, ""Jupyter Notebook"": 744842}",,25,7,"[rephetio, drugbank, drugs, compounds, terminology]",25,39,128,110,39,128,130,10463415600,130,10463415600 10.5281/zenodo.45584,,1,software,https://github.com/dhimmel/disease-ontology,0,7,"{""Web Ontology Language"": 22765913, ""Python"": 42944, ""Jupyter Notebook"": 29520}",,5,1,"[rephetio, disease-ontology, do-slim, hetionet, ontology, human]",5,0,30,0,0,30,35,0,35,0 10.5281/zenodo.45586,,1,software,https://github.com/dhimmel/mesh,3,3,"{""Jupyter Notebook"": 13861}",,0,1,"[mesh, medical-subject-headings, rephetio, hetionet, ontology]",0,2,28,3,2,28,31,255488400,31,255488400 10.5281/zenodo.45604,,1,software,https://github.com/hpparvi/PyBLS,2,2,"{""Fortran"": 7252, ""Python"": 4152}",,4,3,[],4,2,11,2,2,11,11,65750,11,65750 10.5281/zenodo.45639,10.5281/zenodo.594206,1,software,https://github.com/thorstenwagner/TraJ,0,2,"{""Java"": 310558, ""Batchfile"": 18978}",MIT License,10,4,"[trajectory-analysis, diffusion-trajectory, diffusion, diffusion-coefficient, monte-carlo-simulation, simulation]",10,0,6,2,2,40,40,298528,6,0 10.5281/zenodo.45657,10.5281/zenodo.593611,1,software,https://github.com/JohnCremona/ecdata,0,1,"{""M"": 615501, ""HTML"": 305615, ""Python"": 41188, ""Makefile"": 3196}",,4,2,[],4,0,5,0,0,70,73,0,5,0 10.5281/zenodo.45768,,1,dataset,,0,,,,,,,,0,33,0,0,33,34,0,34,0 10.5281/zenodo.45803,,1,software,https://github.com/csuavet/supply-chain-visualization,7,0,"{""JavaScript"": 51785, ""HTML"": 1399, ""CSS"": 571}",Other,2,1,[],2,7,69,7,7,69,70,909902,70,909902 10.5281/zenodo.45811,,1,dataset,,3,,,,,,,,2,167,3,2,167,168,7657180,168,7657180 10.5281/zenodo.45852,,1,publication,,1,,,,,,,,1,36,1,1,36,36,214129,36,214129 10.5281/zenodo.45900,,1,dataset,,13,,,,,,,,6,59,13,6,59,61,13719420640,61,13719420640 10.5281/zenodo.45920,,1,publication,,14,,,,,,,,13,17,14,13,17,17,7195594,17,7195594 10.5281/zenodo.45923,10.5281/zenodo.597175,1,software,https://github.com/NLeSC/PattyVis,0,9,"{""JavaScript"": 195310, ""HTML"": 30747, ""CSS"": 7959}",Apache License 2.0,10,24,[],10,0,12,0,0,3338,5852,0,13,0 10.5281/zenodo.45924,,1,software,https://github.com/NLeSC/PattyData,0,2,"{""HTML"": 948028, ""Python"": 513296, ""TeX"": 87560, ""JavaScript"": 5292, ""CSS"": 2660, ""XSLT"": 1189, ""Makefile"": 354, ""Shell"": 180}",,6,5,[],6,0,13,0,0,13,13,0,13,0 10.5281/zenodo.45925,10.5281/zenodo.597210,1,software,https://github.com/NLeSC/PattyAnalytics,2,7,"{""Python"": 86032}",Apache License 2.0,8,6,[],8,1,21,12,4,3031,5540,9976612,22,1658960 10.5281/zenodo.45926,10.5281/zenodo.594751,1,software,https://github.com/NLeSC/structure-from-motion,1,11,"{""Python"": 56758, ""Shell"": 5438, ""MATLAB"": 2977, ""Java"": 2760, ""Dockerfile"": 1612}",GNU General Public License v2.0,32,12,[],32,1,9,7,4,3026,5530,592806416,9,84684362 10.5281/zenodo.45927,,1,publication,,14,,,,,,,,14,44,14,14,44,44,7880838,44,7880838 10.5281/zenodo.45940,,1,dataset,https://github.com/asherpasha/eFP_Human_Databases,0,0,{},,0,1,[],0,0,16,0,0,16,16,0,16,0 10.5281/zenodo.45973,,1,software,https://github.com/thorstenwagner/TrackMate,0,0,"{""Java"": 2262975, ""MATLAB"": 5585}",,0,2,[],0,0,24,0,0,24,29,0,29,0 10.5281/zenodo.46070,,1,presentation,,36,,,,,,,,25,89,36,25,89,92,3577075740,92,3577075740 10.5281/zenodo.46119,,1,software,,4,,,,,,,,2,22,4,2,22,22,182953,22,182953 10.5281/zenodo.46122,,1,software,https://github.com/kbseah/phylogenomics-tools,5,0,"{""Perl"": 84796}",GNU General Public License v2.0,3,1,[],3,5,112,5,5,112,116,165220,116,165220 10.5281/zenodo.46149,,1,software,https://github.com/thorstenwagner/spie-photonics-europe-2016,0,0,"{""Java"": 14151, ""R"": 11410}",,0,1,[],0,0,9,0,0,9,9,0,9,0 10.5281/zenodo.46165,10.5281/zenodo.596032,1,software,https://github.com/greenelab/DAPS,1,7,"{""HTML"": 2863990, ""Jupyter Notebook"": 1172645, ""Python"": 43120}","BSD 3-Clause ""New"" or ""Revised"" License",32,6,[],32,1,41,1,1,45,47,13106412,43,13106412 10.5281/zenodo.46184,10.5281/zenodo.591796,1,software,https://github.com/pbnjay/lollipops,2,42,"{""Go"": 51956}",GNU General Public License v3.0,117,15,"[go, cancer-variants, cancer-genomics, visualization, diagram]",117,2,36,3,2,53,59,232005,36,128716 10.5281/zenodo.46194,,1,software,https://github.com/clint-leach/Metapop-Disease,3,0,"{""TeX"": 143254, ""R"": 69612}",,0,2,[],0,3,55,3,3,55,55,35222382,55,35222382 10.5281/zenodo.46200,10.5281/zenodo.594712,1,software,https://github.com/pyGSTio/pyGSTi,4,17,"{""Jupyter Notebook"": 23883610, ""Python"": 6757435, ""TeX"": 1514933, ""HTML"": 884344, ""C++"": 112673, ""CSS"": 81554, ""JavaScript"": 33797, ""Shell"": 2250}",Other,30,12,"[tomography, qcvv, quantum-computing, characterization, gst]",30,3,9,65,18,116,139,1255537258,9,81997228 10.5281/zenodo.46216,,1,software,https://github.com/tknapen/FIRDeconvolution,2,6,"{""Jupyter Notebook"": 1559369, ""Python"": 30907}",MIT License,7,5,[],7,2,54,2,2,54,59,11678184,59,11678184 10.5281/zenodo.46235,,1,software,https://github.com/mbertalan/iPsychCNV,0,7,"{""R"": 221983, ""Perl"": 1838}",,6,4,[],6,0,7,0,0,7,7,0,7,0 10.5281/zenodo.46262,,1,software,https://github.com/wiedenhoeft/HaMMLET,0,3,"{""C++"": 297042, ""Python"": 27021, ""C"": 10670, ""Makefile"": 7340, ""HTML"": 5671, ""Shell"": 2996}",GNU General Public License v3.0,9,4,"[hmm, wavelet-compression, wavelet, wavelets, wavelet-transform, genomics, genome-analysis, genome, hidden-markov-model, hidden-markov-models, segmentation, time-series, time-series-analysis, statistics, statistical-inference, bayesian-inference, bayesian-statistics, bayesian-data-analysis, machine-learning, bioinformatics]",9,0,20,0,0,20,21,0,21,0 10.5281/zenodo.46263,,1,dataset,,2,,,,,,,,2,21,2,2,21,22,4000000000,22,4000000000 10.5281/zenodo.46358,,1,software,https://github.com/RolfHut/StoreRawSerialData,0,0,"{""Processing"": 2996}",Apache License 2.0,0,1,[],0,0,22,0,0,22,22,0,22,0 10.5281/zenodo.46366,,1,dataset,,6,,,,,,,,6,24,6,6,24,25,1844187,25,1844187 10.5281/zenodo.46367,,1,dataset,,2,,,,,,,,2,6,2,2,6,6,882262,6,882262 10.5281/zenodo.46392,,1,dataset,,9,,,,,,,,8,378,9,8,378,386,8570604528,386,8570604528 10.5281/zenodo.46394,,1,software,,2,,,,,,,,1,39,2,1,39,40,94532500,40,94532500 10.5281/zenodo.46416,10.5281/zenodo.592275,1,publication,https://github.com/johnstantongeddes/ApTranscriptome,2,2,"{""R"": 55546, ""Python"": 4283, ""Shell"": 2938}",,1,3,[],1,2,54,2,2,65,66,725692,55,725692 10.5281/zenodo.46426,,1,dataset,,4,,,,,,,,4,65,4,4,65,65,63736504,65,63736504 10.5281/zenodo.46440,10.5281/zenodo.591436,1,software,https://github.com/F1000Research/Kibet-F1000Research,0,0,"{""Jupyter Notebook"": 4807595, ""Python"": 32849, ""Shell"": 1773}",GNU General Public License v2.0,0,1,[],0,0,14,0,0,30,30,0,14,0 10.5281/zenodo.46450,10.5281/zenodo.598306,1,software,https://github.com/SALib/SALib,2,88,"{""Python"": 2282120, ""TeX"": 40231, ""Shell"": 1248, ""Batchfile"": 142}",MIT License,254,25,"[sensitivity-analysis-library, sensitivity-analysis, sobol, morris, python, global-sensitivity-analysis, numpy, salib, joss]",254,2,72,30,13,352,370,24945153,72,1703492 10.5281/zenodo.46552,,1,dataset,,1,,,,,,,,1,21,1,1,21,21,44955430,21,44955430 10.5281/zenodo.46662,,1,dataset,,29,,,,,,,,9,41,29,9,41,43,906896,43,906896 10.5281/zenodo.46723,10.5281/zenodo.592677,1,software,https://github.com/thierrygosselin/assigner,2,3,"{""R"": 205118}",GNU General Public License v3.0,9,4,"[genomics, datascience, assignment-analysis, assignment, radseq, radseq-data, fst, gbs, genotyping-by-sequencing]",9,2,33,8,6,104,108,19890838,33,2696194 10.5281/zenodo.46732,,1,software,https://github.com/atenah/Plot-Boundary-Extraction,11,3,"{""Python"": 18057, ""Shell"": 2286}",,6,0,[kml],6,11,81,11,11,81,84,17948260,84,17948260 10.5281/zenodo.46734,,1,software,https://github.com/atenah/Orthomosaic-Generation,6,0,"{""Python"": 7481}",,0,1,[],0,6,53,6,6,53,56,12738,56,12738 10.5281/zenodo.46739,,1,dataset,,48,,,,,,,,43,33,48,43,33,33,9398801,33,9398801 10.5281/zenodo.46756,10.5281/zenodo.593731,1,dataset,https://github.com/psychoinformatics-de/studyforrest-data-multires7t,1,1,"{""Shell"": 1328, ""Makefile"": 23}",Other,4,2,[],4,1,19,1,1,19,21,901298,20,901298 10.5281/zenodo.46866,,1,software,https://github.com/dhimmel/stargeo,1,2,"{""Jupyter Notebook"": 242667}",,1,1,"[stargeo, gene-expression, meta-analysis, rephetio, hetionet, microarray-data, diseases, transcriptomics]",1,1,51,1,1,51,51,89790111,51,89790111 10.5281/zenodo.46935,,1,software,https://github.com/manzali/lseb,0,1,"{""C++"": 119352, ""C"": 70391, ""CMake"": 12737, ""Python"": 4969, ""Shell"": 1476}",,1,5,[],1,0,3,0,0,3,3,0,3,0 10.5281/zenodo.46955,,1,software,https://github.com/SYSBIO-IT/G1-S_SYSBIO.IT_Model,0,0,"{""MATLAB"": 29794}",,0,1,[],0,0,28,0,0,28,28,0,28,0 10.5281/zenodo.47129,,1,software,,0,,,,,,,,0,7,0,0,7,7,0,7,0 10.5281/zenodo.47146,,1,publication,,0,,,,,,,,0,28,0,0,28,28,0,28,0 10.5281/zenodo.47151,10.5281/zenodo.594235,1,software,https://github.com/hammerlab/fancyimpute,0,102,"{""Python"": 95250}",Apache License 2.0,685,29,[],685,0,31,23,21,536,596,1358970,32,0 10.5281/zenodo.47152,,1,software,https://github.com/gavruskin/tauGeodesic,1,0,"{""Java"": 4144318, ""TeX"": 211533, ""Shell"": 9109, ""Perl"": 2889}",GNU General Public License v2.0,0,5,[],0,1,25,1,1,25,25,17364539,25,17364539 10.5281/zenodo.47157,,1,software,https://github.com/dhimmel/bgee,0,2,"{""Jupyter Notebook"": 138657, ""Shell"": 812}",,1,2,"[bgee, gene-expression, transcriptomics, tsv, anatomy, gene, rephetio, hetionet]",1,0,29,0,0,29,32,0,32,0 10.5281/zenodo.47206,,1,dataset,,9,,,,,,,,5,50,9,5,50,53,4832137440,53,4832137440 10.5281/zenodo.47216,,1,software,,0,,,,,,,,0,17,0,0,17,17,0,17,0 10.5281/zenodo.47223,10.5281/zenodo.597451,1,software,https://github.com/dhimmel/lincs,2,3,"{""Jupyter Notebook"": 281922, ""Python"": 58764}",,9,5,"[lincs, l1000, gene-expression, rephetio]",9,2,98,2,2,125,132,332816712,103,332816712 10.5281/zenodo.47268,,1,software,,0,,,,,,,,0,9,0,0,9,9,0,9,0 10.5281/zenodo.47274,10.5281/zenodo.594254,1,software,https://github.com/sympy/sympy,8,2612,"{""Python"": 27024360, ""XSLT"": 366245, ""ANTLR"": 8513, ""Perl"": 7590, ""Shell"": 6760, ""Dockerfile"": 926, ""Scheme"": 125}",Other,5989,313,"[python, math, computer-algebra, science]",5989,5,117,83,28,395,441,533093164,119,41628904 10.5281/zenodo.47315,,1,dataset,,52,,,,,,,,30,108,52,30,108,119,106550863,119,106550863 10.5281/zenodo.47317,,1,dataset,,347,,,,,,,,274,1137,347,274,1137,1211,637790082,1211,637790082 10.5281/zenodo.47321,10.5281/zenodo.594656,1,dataset,https://github.com/kamermanpr/Resilience.HIVPain,0,0,{},Other,0,0,[],0,0,17,2,2,31,64,46300952,20,0 10.5281/zenodo.47408,10.5281/zenodo.594683,1,software,https://github.com/vertesy/MarkdownReports,1,6,"{""HTML"": 1498473, ""R"": 197371, ""Python"": 1157, ""Rebol"": 260}",GNU General Public License v3.0,9,1,"[markdown, scientific, reporting, rmarkdown, documentation, visualization]",9,1,29,3,2,76,89,1281281,30,415314 10.5281/zenodo.47479,,1,software,https://github.com/jessicachung/rna_seq_pipeline,0,0,"{""Python"": 111756, ""R"": 22398, ""Shell"": 5306}",MIT License,0,1,[],0,0,13,0,0,13,13,0,13,0 10.5281/zenodo.475054,,1,publication,,75,,,,,,,,65,80,75,65,80,81,24731039,81,24731039 10.5281/zenodo.47512,,1,software,https://github.com/NLeSC/root-conda-recipes,0,15,"{""Shell"": 30696, ""Python"": 4754, ""Dockerfile"": 1521, ""C"": 536, ""Batchfile"": 283, ""CSS"": 57}",,29,9,[],29,0,3332,0,0,3332,3338,0,3338,0 10.5281/zenodo.47600,,1,software,https://github.com/lolotana/transitional_ordinal,8,0,"{""R"": 21122}",,0,1,[],0,7,32,8,7,32,32,51056,32,51056 10.5281/zenodo.47652,10.5281/zenodo.593516,1,software,https://github.com/astropy/ccdproc,0,63,"{""Python"": 350121}","BSD 3-Clause ""New"" or ""Revised"" License",50,17,"[python, astropy-affiliated, ccd, astronomy]",50,0,168,6,3,229,254,2515740,171,0 10.5281/zenodo.47664,,1,software,https://github.com/dhimmel/indications,4,4,"{""HTML"": 11369859, ""Jupyter Notebook"": 119649, ""TeX"": 15036}",,5,2,"[rephetio, pharmacotherapydb, indications, drug-repurposing, medicine]",5,4,47,4,4,47,47,179773236,47,179773236 10.5281/zenodo.47706,,1,software,,11,,,,,,,,6,25,11,6,25,25,150086,25,150086 10.5281/zenodo.47709,,1,dataset,,3,,,,,,,,3,18,3,3,18,18,154180650,18,154180650 10.5281/zenodo.47712,,1,software,https://github.com/OP2/PyOP2,0,21,"{""Python"": 693603, ""Makefile"": 1973, ""C"": 288}",Other,50,26,[],50,0,2,0,0,2,2,0,2,0 10.5281/zenodo.47713,,1,software,https://github.com/firedrakeproject/ufl,0,4,"{""Python"": 1130887}",GNU Lesser General Public License v3.0,1,30,[],1,0,2,0,0,2,2,0,2,0 10.5281/zenodo.47714,,1,software,https://github.com/firedrakeproject/petsc4py,0,4,"{""Python"": 1034075, ""C++"": 26133, ""C"": 14018, ""Makefile"": 3232, ""Shell"": 191}",Other,0,28,[],0,0,53,0,0,53,53,0,53,0 10.5281/zenodo.47715,,1,software,https://github.com/coneoproject/COFFEE,0,7,"{""Python"": 344371, ""Shell"": 38}",Other,8,13,[],8,0,2,0,0,2,2,0,2,0 10.5281/zenodo.47716,,1,software,https://github.com/firedrakeproject/fiat,0,2,"{""Python"": 406001, ""Shell"": 6563}",GNU Lesser General Public License v3.0,0,29,[],0,0,1,0,0,1,1,0,1,0 10.5281/zenodo.47717,,1,software,https://github.com/firedrakeproject/firedrake,0,61,"{""Python"": 2011082, ""C"": 3285, ""HTML"": 2843, ""GLSL"": 2520, ""Makefile"": 2245}",Other,157,45,[],157,0,5,0,0,5,5,0,5,0 10.5281/zenodo.47718,10.5281/zenodo.594366,1,software,https://github.com/firedrakeproject/petsc,6,2,"{""C"": 32317092, ""TeX"": 2921496, ""Python"": 1777689, ""Fortran"": 1153003, ""C++"": 1017621, ""Objective-C"": 884682, ""Makefile"": 375893, ""Shell"": 243192, ""Cuda"": 234491, ""MATLAB"": 143174, ""JavaScript"": 135372, ""HTML"": 109915, ""PostScript"": 38285, ""Perl"": 37948, ""XSLT"": 19880, ""Emacs Lisp"": 6844, ""Roff"": 4249, ""Swift"": 3186, ""Forth"": 2930, ""CSS"": 2523, ""GLSL"": 1727, ""Rich Text Format"": 436, ""Assembly"": 392, ""Java"": 334, ""M"": 239}",Other,0,28,[],0,5,5,149,27,87,95,2942971665,5,97017804 10.5281/zenodo.47761,10.5281/zenodo.594870,1,software,https://github.com/doru1004/ffc_zenodo,0,0,"{""Python"": 1296888, ""C++"": 193077, ""TeX"": 112330, ""Shell"": 9376, ""CMake"": 2276, ""Makefile"": 1551, ""C"": 20}",GNU Lesser General Public License v3.0,0,1,[],0,0,3,0,0,10,10,0,3,0 10.5281/zenodo.47803,,1,software,https://github.com/rhiever/ReliefF,1,,,,,,,,1,47,1,1,47,49,12968,49,12968 10.5281/zenodo.47926,10.5281/zenodo.591842,1,software,https://github.com/petebachant/UNH-RVAT-3D-OpenFOAM,6,3,"{""C++"": 62966, ""Python"": 36826, ""Shell"": 6733}",MIT License,2,2,[],2,6,28,10,9,43,49,4631772,28,2684376 10.5281/zenodo.47927,10.5281/zenodo.591842,1,software,https://github.com/petebachant/UNH-RVAT-3D-OpenFOAM,4,3,"{""C++"": 62966, ""Python"": 36826, ""Shell"": 6733}",MIT License,2,2,[],2,4,20,10,9,43,49,4631772,21,1947396 10.5281/zenodo.47928,10.5281/zenodo.591827,1,software,https://github.com/petebachant/UNH-RVAT-2D-OpenFOAM,8,2,"{""C++"": 50053, ""Python"": 23701, ""Shell"": 3473}",MIT License,1,4,[],1,8,29,13,12,54,61,4516640,30,2803200 10.5281/zenodo.47929,10.5281/zenodo.591827,1,software,https://github.com/petebachant/UNH-RVAT-2D-OpenFOAM,5,2,"{""C++"": 50053, ""Python"": 23701, ""Shell"": 3473}",MIT License,1,4,[],1,5,31,13,12,54,61,4516640,31,1713440 10.5281/zenodo.47945,10.5281/zenodo.594791,1,software,https://github.com/jgpavez/DecomposingTests,0,0,"{""Jupyter Notebook"": 3852078, ""Python"": 257354, ""TeX"": 45980, ""C++"": 18388, ""C"": 5109, ""Makefile"": 1664, ""Objective-C"": 251}",,2,2,[],2,0,4,0,0,9,10,0,5,0 10.5281/zenodo.47949,10.5281/zenodo.594115,1,software,https://github.com/dreamtools/dreamtools,0,9,"{""Python"": 618105, ""Jupyter Notebook"": 301558, ""MATLAB"": 120090, ""Component Pascal"": 85705, ""R"": 41494, 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10.5281/zenodo.48201,,1,software,https://github.com/NCBI-Hackathons/Structural_Variant_Comparison,0,8,"{""Python"": 30762, ""Shell"": 12949, ""Perl"": 4665, ""HTML"": 457, ""Awk"": 375}",Creative Commons Zero v1.0 Universal,14,13,[],14,0,40,0,0,40,40,0,40,0 10.5281/zenodo.48202,,1,software,https://github.com/NCBI-Hackathons/Network_SNPs,3,5,"{""Python"": 22658, ""R"": 10158, ""Shell"": 2287, ""PHP"": 1101, ""HTML"": 535}",Creative Commons Zero v1.0 Universal,17,9,[],17,3,42,3,3,42,43,34632675,43,34632675 10.5281/zenodo.48254,,1,software,,6,,,,,,,,6,108,6,6,108,112,120710652,112,120710652 10.5281/zenodo.48256,,1,software,,0,,,,,,,,0,25,0,0,25,25,0,25,0 10.5281/zenodo.48262,,1,software,,1,,,,,,,,1,102,1,1,102,115,1691016,115,1691016 10.5281/zenodo.48264,,1,software,https://github.com/moiseevigor/elliptic,5,5,"{""MATLAB"": 70181}",,8,2,"[matlab, octave, elliptic-integrals, elliptic-functions, theta-functions, complex, mathematical-functions]",8,5,75,5,5,75,79,268940,79,268940 10.5281/zenodo.48266,,1,dataset,,54,,,,,,,,47,280,54,47,280,290,9883436886,290,9883436886 10.5281/zenodo.48360,,1,software,https://github.com/EFerriss/HydrogenCpx,0,0,"{""Python"": 202173}",MIT License,0,1,[],0,0,7,0,0,7,7,0,7,0 10.5281/zenodo.48382,,1,publication,,32,,,,,,,,29,61,32,29,61,63,19605792,63,19605792 10.5281/zenodo.48407,10.5281/zenodo.592037,1,software,https://github.com/ITensor/ITensor,2,100,"{""C++"": 2115672, ""Makefile"": 21733, ""C"": 5834, ""Groovy"": 1786}",Apache License 2.0,174,32,"[tensors, physics, chemistry, tensor-decomposition]",174,2,31,7,7,225,259,3000140,33,843900 10.5281/zenodo.48421,,1,dataset,https://github.com/psychoinformatics-de/studyforrest-data-phase2,4,5,"{""Python"": 35138, ""Shell"": 19012, ""Makefile"": 80}",Other,6,1,[],6,4,38,4,4,38,43,3814556,43,3814556 10.5281/zenodo.48423,10.5281/zenodo.598331,1,software,https://github.com/INBO-BMK/multimput,1,2,"{""R"": 51463}",GNU General Public License v3.0,2,5,"[r, package, imputation, imputation-model]",2,1,15,16,4,31,34,34440785,15,5170792 10.5281/zenodo.48426,,1,software,https://github.com/dhimmel/disgenet,2,1,"{""Jupyter Notebook"": 51048}",,0,1,"[disgenet, disease-gene-association, disease, genes, associations, rephetio, hetionet]",0,2,38,2,2,38,38,60326200,38,60326200 10.5281/zenodo.48427,,1,software,https://github.com/dhimmel/doaf,1,0,"{""Jupyter Notebook"": 8282}",,0,1,"[doaf, diseases, genes, association, generif, rephetio, hetionet]",0,1,58,1,1,58,63,8767097,63,8767097 10.5281/zenodo.48437,10.5281/zenodo.593914,1,software,https://github.com/AndrewAnnex/SpiceyPy,0,45,"{""Python"": 952906, ""Batchfile"": 1111}",MIT License,126,22,"[python, nasa, toolkit, spice, space, ephemeris, navigation]",126,0,12,7,4,162,180,2091460,12,0 10.5281/zenodo.48443,,1,software,https://github.com/dhimmel/ppi,2,3,"{""Jupyter Notebook"": 54767}",,0,1,"[ppi, genes, proteins, protein-interaction, rephetio, hetionet]",0,2,10,2,2,10,10,12984808,10,12984808 10.5281/zenodo.48444,,1,software,https://github.com/dhimmel/erc,1,1,"{""Jupyter Notebook"": 83265, ""R"": 2618}",,0,1,"[erc, evolutionary-rate-covariation, genes, human, evolution, rephetio, hetionet, data]",0,1,14,1,1,14,14,6823618,14,6823618 10.5281/zenodo.48445,,1,software,https://github.com/dhimmel/medline,3,3,"{""Jupyter Notebook"": 111235, ""Python"": 3421}",,6,2,"[rephetio, hetionet, medline, pubmed, cooccurrence, symptoms, diseases, anatomy, text-mining, literature]",6,3,30,3,3,30,31,187660494,31,187660494 10.5281/zenodo.48470,10.5281/zenodo.594920,1,software,https://github.com/ghislainv/hSDM,1,0,"{""C"": 317962, ""R"": 130415, ""C++"": 346}",GNU General Public License v3.0,1,2,[],1,1,76,1,1,79,99,466653,90,466653 10.5281/zenodo.48474,,1,software,https://github.com/vbalderdash/LMAsimulation,2,2,"{""Jupyter Notebook"": 1476006, ""Python"": 62853}",MIT License,2,1,[],2,2,38,2,2,38,40,1376262,40,1376262 10.5281/zenodo.48651,,1,dataset,,2,,,,,,,,2,44,2,2,44,44,3062,44,3062 10.5281/zenodo.48656,,1,software,,16,,,,,,,,9,63,16,9,63,65,149316494,65,149316494 10.5281/zenodo.48688,,1,software,https://github.com/SimonYansenZhao/en-lda-fgkm-testdata,0,0,{},,0,1,[],0,0,3,0,0,3,3,0,3,0 10.5281/zenodo.48694,,1,software,https://github.com/fraserw/trippy,3,9,"{""Jupyter Notebook"": 595312, ""Python"": 171404}",GNU General Public License v3.0,12,3,[],12,3,229,3,3,229,235,2258898,235,2258898 10.5281/zenodo.48728,,1,dataset,,55,,,,,,,,38,92,55,38,92,94,3882509,94,3882509 10.5281/zenodo.48753,,1,software,https://github.com/Florian-Schneider/IMEX_MixedMoments,1,0,"{""MATLAB"": 485136, ""C"": 282345, ""Groff"": 83512, ""HTML"": 11073, ""Makefile"": 3749, ""C++"": 2690, ""Objective-C"": 326}",MIT License,0,1,[],0,1,14,1,1,14,14,13038675,14,13038675 10.5281/zenodo.48780,,1,dataset,,9,,,,,,,,8,73,9,8,73,75,1363320987,75,1363320987 10.5281/zenodo.48790,,1,software,https://github.com/andersgs/canberra_workshop_day2,3,1,"{""R"": 28380, ""Python"": 3294, ""Shell"": 402}",MIT License,0,1,[],0,3,14,3,3,14,18,9440916,18,9440916 10.5281/zenodo.48810,10.5281/zenodo.593860,1,software,https://github.com/dhimmel/pathways,7,1,"{""Jupyter Notebook"": 72315}",,1,2,"[pathways, human, genes, wikipathways, reactome, pathway-interaction-database, pathway-commons, tsv, rephetio, hetionet]",1,5,39,7,5,51,52,6458424,39,6458424 10.5281/zenodo.48831,10.5281/zenodo.594657,1,software,https://github.com/nikolaichik/SigmoID,5,0,"{""Xojo"": 5987928, ""HTML"": 502974, ""Python"": 167043, ""Perl"": 21298, ""Shell"": 50}",GNU General Public License v3.0,12,5,[],12,5,38,11,5,48,50,476228786,39,172085405 10.5281/zenodo.48836,,1,software,,59,,,,,,,,32,211,59,32,211,233,3677800,233,3677800 10.5281/zenodo.48851,10.5281/zenodo.594268,1,software,https://github.com/nschorgh/Planetary-Code-Collection,1,3,"{""Fortran"": 384387, ""Makefile"": 9993, ""MATLAB"": 4981, ""Shell"": 386, ""Perl"": 25}",,5,1,"[planetary-surfaces, exosphere-models, ice-evolution-models, self-heating, mars, moon, mauna-kea, vapor-diffusion, thermal-models]",5,1,20,8,4,135,153,13372313,20,234745 10.5281/zenodo.48859,,1,publication,,152,,,,,,,,131,260,152,131,260,278,61477920,278,61477920 10.5281/zenodo.48865,,1,publication,,15,,,,,,,,14,17,15,14,17,17,14301945,17,14301945 10.5281/zenodo.48872,,1,software,https://github.com/IMTMarburg/rnaseqmixture,1,0,"{""Python"": 81596}",,2,1,[],2,1,5,1,1,5,5,20581,5,20581 10.5281/zenodo.48933,10.5281/zenodo.592388,1,software,https://github.com/ALaDyn/ALaDyn,4,11,"{""Fortran"": 998730, ""CMake"": 21171, ""Shell"": 14310, ""C++"": 7172, ""Batchfile"": 955, ""PowerShell"": 635}",GNU General Public License v3.0,18,11,"[pic, laser-plasma-acceleration, beam-plasma-acceleration, plasma]",18,3,7,79,47,490,587,28843951,8,825716 10.5281/zenodo.49063,,1,software,https://github.com/richard-meier/JayhawksProstateDream,2,1,"{""R"": 74298}",GNU General Public License v2.0,1,2,[],1,2,27,2,2,27,28,65348,28,65348 10.5281/zenodo.49065,,1,software,,8,,,,,,,,8,8,8,8,8,8,668051,8,668051 10.5281/zenodo.49093,10.5281/zenodo.593386,1,software,https://github.com/surh/AMOR,2,3,"{""R"": 103785}",GNU General Public License v3.0,0,1,"[microbiome, bioinformatics, bioinformatics-analysis]",0,2,33,2,2,57,58,206950,33,206950 10.5281/zenodo.49136,,1,publication,,1,,,,,,,,1,2,1,1,2,2,394720,2,394720 10.5281/zenodo.49173,,1,dataset,,1,,,,,,,,1,44,1,1,44,44,1057200,44,1057200 10.5281/zenodo.49234,,1,software,https://github.com/cytognomix/maskminent,9,0,{},GNU General Public License v3.0,0,1,[],0,9,40,9,9,40,42,3522366,42,3522366 10.5281/zenodo.49235,10.5281/zenodo.632362,1,software,,2,,,,,,,,2,147,2,2,147,147,13503420,147,13503420 10.5281/zenodo.49292,,1,software,,5,,,,,,,,5,68,5,5,68,75,21415,75,21415 10.5281/zenodo.49367,,1,software,,11,,,,,,,,11,111,11,11,111,116,30892378,116,30892378 10.5281/zenodo.49369,,1,software,https://github.com/Arabidopsis-Information-Portal/SeqLighter,2,1,"{""JavaScript"": 33419, ""CSS"": 7816}",MIT License,4,8,"[jbrowse, jbrowse-plugin]",4,2,27,2,2,27,28,60318636,28,60318636 10.5281/zenodo.49428,10.5281/zenodo.598352,1,software,https://github.com/lmfit/lmfit-py,11,127,"{""Python"": 605388, ""Shell"": 1170, ""Batchfile"": 236}",Other,394,37,"[python, scipy, curve-fitting]",394,9,26,198,64,1672,2270,283784440,26,16600188 10.5281/zenodo.494993,,1,dataset,,4,,,,,,,,3,6,4,3,6,7,3441352,7,3441352 10.5281/zenodo.49500,,1,software,,1,,,,,,,,1,44,1,1,44,44,6618937,44,6618937 10.5281/zenodo.495025,10.5281/zenodo.597181,1,software,https://github.com/zerothi/sisl,2,21,"{""C"": 14563631, ""Python"": 2125409, ""Fortran"": 50709, ""Jupyter Notebook"": 5758, ""Shell"": 5333}",GNU Lesser General Public License v3.0,33,12,"[physics, negf, geometry, density-functional-theory, density-of-states, io, siesta, transiesta, condensed-matter, solid-state-physics, solid-state, graphene, tbtrans, wannier90, gulp, vasp, bigdft]",33,1,22,112,49,574,663,244874638,24,509190 10.5281/zenodo.495220,10.5281/zenodo.597045,1,software,https://github.com/FelixHenninger/lab.js,1,26,"{""JavaScript"": 673277, ""CSS"": 25125, ""HTML"": 19962, ""R"": 3969, ""PHP"": 2160}",Other,71,10,"[psychology, economics, science, research, javascript, psychology-experiments]",71,1,11,13,9,187,241,87147786,12,4352725 10.5281/zenodo.495368,,1,software,https://github.com/alessandrofelder/wallaby,0,0,{},GNU General Public License v3.0,1,1,"[imagej, macro, microscopy, semi-automatic]",1,0,2,0,0,2,2,0,2,0 10.5281/zenodo.495405,,1,software,https://github.com/RuthPetrie/abc_model,3,1,"{""Fortran"": 126923, ""Python"": 46102, ""Makefile"": 2994, ""NewLisp"": 1634}",GNU General Public License v3.0,0,1,[],0,3,34,3,3,34,34,4212378,34,4212378 10.5281/zenodo.49559,,1,dataset,,2,,,,,,,,1,66,2,1,66,66,2395279360,66,2395279360 10.5281/zenodo.49560,,1,software,https://github.com/btel/neuroneap,1,2,"{""Python"": 44873, ""AMPL"": 4928}",,1,4,[],1,1,36,1,1,36,38,62269,38,62269 10.5281/zenodo.49563,10.5281/zenodo.595016,1,software,https://github.com/Richardjmorton/NUWT,0,0,"{""Prolog"": 80559, ""IDL"": 63208, ""TeX"": 42384}",MIT License,2,3,[],2,0,20,8,7,56,63,1297609029,20,0 10.5281/zenodo.495643,,1,software,https://github.com/MochiLab/MochiControl,2,1,"{""LabVIEW"": 470300}",Other,0,1,[],0,1,40,2,1,40,42,31723566,42,31723566 10.5281/zenodo.49565,10.5281/zenodo.592093,1,software,https://github.com/mengomarlene/opti4Abq,3,6,"{""Python"": 47234, ""TeX"": 16576}",Other,5,3,[],5,3,28,16,12,168,188,156471513,29,50058 10.5281/zenodo.495697,10.5281/zenodo.604754,1,dataset,,5,,,,,,,,5,29,5,5,29,29,728609662,29,728609662 10.5281/zenodo.495710,,1,software,https://github.com/shortlab/geminio,1,0,"{""C"": 510373, ""C++"": 114081, ""Shell"": 38188, ""Python"": 1951, ""Makefile"": 1527}",GNU Lesser General Public License v2.1,0,8,[],0,1,10,1,1,10,10,226817449,10,226817449 10.5281/zenodo.495770,,1,publication,,60,,,,,,,,57,142,60,57,142,151,34381140,151,34381140 10.5281/zenodo.495773,,1,publication,,127,,,,,,,,120,255,127,120,255,329,102185089,329,102185089 10.5281/zenodo.495777,,1,publication,,111,,,,,,,,100,195,111,100,195,204,61557825,204,61557825 10.5281/zenodo.495787,10.5281/zenodo.597311,1,software,https://github.com/MochiLab/mochiFPGAcontrol,0,1,"{""LabVIEW"": 439771}",MIT License,0,1,[],0,0,26,0,0,31,33,0,27,0 10.5281/zenodo.496141,10.5281/zenodo.594994,1,software,https://github.com/brian-rose/climlab,0,26,"{""Fortran"": 10505364, ""Jupyter Notebook"": 3389589, ""Python"": 522720, ""Shell"": 3206, ""PowerShell"": 3150, ""TeX"": 2253, ""C"": 1456, ""Batchfile"": 289}",MIT License,76,13,"[python, climate-model, educational-software, climate-science]",76,0,15,11,6,122,127,158290589,15,0 10.5281/zenodo.496143,,1,publication,,0,,,,,,,,0,18,0,0,18,22,0,22,0 10.5281/zenodo.496177,,1,dataset,,0,,,,,,,,0,17,0,0,17,20,0,20,0 10.5281/zenodo.49636,,1,software,,6,,,,,,,,6,49,6,6,49,49,136644474,49,136644474 10.5281/zenodo.49678,,1,publication,,9,,,,,,,,8,16,9,8,16,16,15847461,16,15847461 10.5281/zenodo.49754,,1,dataset,,8,,,,,,,,8,47,8,8,47,49,130958720,49,130958720 10.5281/zenodo.49840,,1,dataset,,0,,,,,,,,0,15,0,0,15,15,0,15,0 10.5281/zenodo.49844,10.5281/zenodo.594894,1,software,https://github.com/paulvickers/nuson-SOCS,0,0,"{""Pure Data"": 103810, ""Python"": 7076}",MIT License,2,1,[],2,0,7,0,0,7,8,0,8,0 10.5281/zenodo.49910,10.5281/zenodo.591564,1,software,https://github.com/scikit-learn/scikit-learn,3,17058,"{""Python"": 8142125, ""C++"": 140650, ""C"": 44315, ""Shell"": 31041, ""PowerShell"": 7197, ""Batchfile"": 5213, ""Makefile"": 1716}",Other,35841,2263,"[machine-learning, python, statistics, data-science, data-analysis]",35841,3,85,55,42,1108,1224,383662744,86,25611567 10.5281/zenodo.499122,10.5281/zenodo.592406,1,software,https://github.com/Axelrod-Python/Axelrod,6,138,"{""Python"": 1326560, ""Shell"": 82}",Other,404,24,"[python, game-theory, reproducible-research, mathematics, computer-science]",404,5,14,375,19,386,468,237284079,14,4185942 10.5281/zenodo.49944,,1,dataset,,130,,,,,,,,64,297,130,64,297,327,59659995400,327,59659995400 10.5281/zenodo.49987,10.5281/zenodo.594047,1,software,https://github.com/cdiener/dycone,1,1,"{""R"": 109176, ""C++"": 16162, ""Dockerfile"": 487}",MIT License,0,1,"[metabolomics-data, enzyme-regulation, systems-biology, statistics, metabolome]",0,1,5,5,2,11,12,444087,5,89971 10.5281/zenodo.49992,,1,software,https://github.com/shortlab/mamba,8,11,"{""Fortran"": 458814, ""C"": 166923, ""C++"": 104178, ""Shell"": 50919, ""Python"": 16800, ""Makefile"": 2399, ""Groff"": 224}",GNU Lesser General Public License v2.1,7,6,[],7,8,105,8,8,105,115,615389392,115,615389392 10.5281/zenodo.50023,,1,software,https://github.com/simonvh/solexatools,1,0,"{""Python"": 66120}",MIT License,0,1,[],0,1,6,1,1,6,6,26858,6,26858 10.5281/zenodo.50086,10.5281/zenodo.594469,1,software,https://github.com/ASaiM/group_humann2_uniref_abundances_to_GO,2,2,"{""Shell"": 6514, ""Python"": 5709}",Apache License 2.0,0,2,[],0,2,57,2,2,76,79,56999130,60,56999130 10.5281/zenodo.50108,,1,dataset,,37,,,,,,,,24,58,37,24,58,60,41273241,60,41273241 10.5281/zenodo.50203,10.5281/zenodo.592912,1,software,https://github.com/ALPSCore/ALPSCore,2,31,"{""C++"": 5422027, ""Shell"": 354342, ""Python"": 199953, ""CMake"": 105779, ""Makefile"": 73338, ""C"": 60444, ""M4"": 19093}",Other,52,26,[],52,1,28,57,7,108,124,82834064,28,3181254 10.5281/zenodo.50215,10.5281/zenodo.595061,1,software,https://github.com/barklem/hlinop,1,1,"{""Fortran"": 653493, ""Makefile"": 1953}",GNU General Public License v3.0,2,1,[],2,1,18,1,1,18,19,2214690,19,2214690 10.5281/zenodo.50216,,1,software,https://github.com/barklem/abo-cross,0,1,"{""Fortran"": 47689, ""DIGITAL Command Language"": 103}",GNU General Public License v3.0,5,3,[],5,0,14,0,0,14,14,0,14,0 10.5281/zenodo.50218,,1,software,https://github.com/barklem/mswavef,0,0,"{""Mathematica"": 656334, ""IDL"": 46281}",GNU General Public License v3.0,0,2,[],0,0,6,0,0,6,6,0,6,0 10.5281/zenodo.50248,10.5281/zenodo.595103,1,software,https://github.com/ruthgrace/ruth_unifrac_workshop,5,0,"{""R"": 28357}",MIT License,1,1,[],1,5,51,5,5,53,58,17274905,54,17274905 10.5281/zenodo.50293,,1,dataset,,0,,,,,,,,0,8,0,0,8,11,0,11,0 10.5281/zenodo.50378,,1,software,,4,,,,,,,,4,52,4,4,52,55,66665660,55,66665660 10.5281/zenodo.50505,,1,software,https://github.com/manfredg/MEICA-BMU,0,0,"{""Python"": 2258740, ""CSS"": 1775}",,0,1,[],0,0,20,0,0,20,24,0,24,0 10.5281/zenodo.50506,,1,software,https://github.com/ErillLab/Transfer_method_analysis,0,0,"{""Python"": 57286, ""R"": 511}",,0,1,[],0,0,1,0,0,1,1,0,1,0 10.5281/zenodo.50587,,1,software,,3,,,,,,,,3,23,3,3,23,26,21148674,26,21148674 10.5281/zenodo.50594,10.5281/zenodo.591829,1,software,https://github.com/petebachant/RM2-turbinesFoam,1,0,"{""C++"": 47229, ""Python"": 32719}",,0,1,[],0,1,4,1,1,6,7,43371,4,43371 10.5281/zenodo.50610,,1,publication,,177,,,,,,,,163,188,177,163,188,197,184770108,197,184770108 10.5281/zenodo.50629,,1,software,https://github.com/ruthgrace/R_Scripts,2,1,"{""JavaScript"": 4797428, ""CSS"": 205412, ""HTML"": 135725, ""R"": 98635}",,0,1,[],0,2,21,2,2,21,22,8852336,22,8852336 10.5281/zenodo.50633,,1,dataset,,8,,,,,,,,7,171,8,7,171,179,190863024,179,190863024 10.5281/zenodo.50652,,1,dataset,,8,,,,,,,,8,59,8,8,59,60,4366160,60,4366160 10.5281/zenodo.50664,,1,software,https://github.com/joergdietrich/NFW,0,5,"{""Python"": 40903}","BSD 2-Clause ""Simplified"" License",5,5,"[nfw, halo, python, astrophysics, astronomy, galaxy-clusters, galaxies, navarro-frenk-white]",5,0,26,0,0,26,26,0,26,0 10.5281/zenodo.50672,,1,publication,,0,,,,,,,,0,25,0,0,25,25,0,25,0 10.5281/zenodo.50726,10.5281/zenodo.592960,1,software,https://github.com/mrirecon/bart,2,75,"{""C"": 1702441, ""C++"": 1095810, ""CMake"": 211571, ""Cuda"": 99259, ""Makefile"": 74530, ""Python"": 32737, ""Shell"": 11383, ""MATLAB"": 6886}","BSD 3-Clause ""New"" or ""Revised"" License",89,37,"[computational-imaging, mri, iterative-methods, compressed-sensing, bart-toolbox]",89,2,87,109,95,1001,1113,75055696,87,922500 10.5281/zenodo.50739,,1,presentation,,4,,,,,,,,1,26,4,1,26,26,81380192,26,81380192 10.5281/zenodo.50804,,1,software,https://github.com/esbg/msaont,,0,"{""Python"": 5682}",MIT License,0,1,[],0,,,,,,,,, 10.5281/zenodo.50843,,1,dataset,,0,,,,,,,,0,6,0,0,6,6,0,6,0 10.5281/zenodo.50847,,1,publication,,8,,,,,,,,7,18,8,7,18,18,9216976,18,9216976 10.5281/zenodo.50850,,1,publication,,23,,,,,,,,21,32,23,21,32,32,110621674,32,110621674 10.5281/zenodo.50855,,1,publication,,2,,,,,,,,2,8,2,2,8,8,1583044,8,1583044 10.5281/zenodo.50872,,1,software,https://github.com/nielsrhansen/ProstateDream,4,1,"{""HTML"": 4152530, ""R"": 24226}",GNU General Public License v3.0,2,4,[],2,3,31,4,3,31,32,27106864,32,27106864 10.5281/zenodo.50875,,1,software,https://github.com/gifforda/AJP_Gifford_MRI_and_PET_CT_Properties_of_BAT,0,1,"{""MATLAB"": 49250, ""Python"": 8725, ""Rebol"": 8570, ""R"": 4188}",MIT License,0,0,[],0,0,13,0,0,13,14,0,14,0 10.5281/zenodo.50878,10.5281/zenodo.595158,1,software,https://github.com/cole-brokamp/aiRpollution,1,1,"{""R"": 25600}",MIT License,2,1,[],2,1,10,3,3,14,18,111219,13,84193 10.5281/zenodo.50931,,1,software,,173,,,,,,,,167,750,173,167,750,780,1779916555,780,1779916555 10.5281/zenodo.50951,10.5281/zenodo.594587,1,software,https://github.com/flav-io/flavio,9,19,"{""Python"": 1025564, ""Makefile"": 54358}",MIT License,29,8,"[flavour-physics, python, hep, physics, high-energy-physics, particle-physics, eft]",29,7,22,431,35,629,728,294614165,22,4356954 10.5281/zenodo.50968,,1,software,,0,,,,,,,,0,25,0,0,25,25,0,25,0 10.5281/zenodo.50971,,1,software,https://github.com/fohebert/corset_pipeline,1,0,"{""Shell"": 4150}",GNU General Public License v3.0,2,1,[],2,1,24,1,1,24,24,342578,24,342578 10.5281/zenodo.50974,,1,software,https://github.com/fohebert/Trinotate_pipeline,2,1,"{""Shell"": 8558}",,2,2,[],2,2,62,2,2,62,62,27504,62,27504 10.5281/zenodo.50994,,1,software,,0,,,,,,,,0,16,0,0,16,16,0,16,0 10.5281/zenodo.51033,,1,software,https://github.com/Parallel-in-Time/pySDC,0,9,"{""Python"": 1733889, ""Shell"": 5555}","BSD 2-Clause ""Simplified"" License",10,10,"[parallel-in-time, python, iterative-methods, parallel-computing, partial-differential-equations, ordinary-differential-equations, collocation-method, multigrid, pfasst, spectral-deferred-corrections]",10,0,14,0,0,14,14,0,14,0 10.5281/zenodo.51110,10.5281/zenodo.593307,1,software,https://github.com/poissonconsulting/ranmrdata,0,0,"{""R"": 2610}",Other,0,1,[],0,0,8,0,0,15,15,0,8,0 10.5281/zenodo.51147,,1,image,,31,,,,,,,,22,81,31,22,81,84,3473992,84,3473992 10.5281/zenodo.51157,10.5281/zenodo.592175,1,software,https://github.com/ankitrohatgi/WebPlotDigitizer,8,107,"{""JavaScript"": 440850, ""Jupyter Notebook"": 129722, ""HTML"": 71221, ""CSS"": 8511, ""Go"": 7249, ""Shell"": 6381, ""C++"": 1538, ""Python"": 1419}",GNU Affero General Public License v3.0,761,59,"[javascript, webplotdigitizer, html, data-mining, visualization, reverse-engineering]",761,8,89,100,68,610,710,1484209149,93,165613544 10.5281/zenodo.51204,,1,software,,1,,,,,,,,1,24,1,1,24,25,105444,25,105444 10.5281/zenodo.51260,,1,software,https://github.com/chapmandu2/IncucyteDRC,1,0,"{""HTML"": 1289819, ""R"": 70198}",,2,1,[cruk-mi-ddu],2,1,36,1,1,36,36,1405166,36,1405166 10.5281/zenodo.51274,10.5281/zenodo.593352,1,software,https://github.com/poissonconsulting/ranmr,0,0,"{""R"": 15058}",Other,0,1,[],0,0,4,0,0,32,32,0,4,0 10.5281/zenodo.51325,,1,software,,11,,,,,,,,11,37,11,11,37,38,3070914,38,3070914 10.5281/zenodo.51349,,1,software,https://github.com/guyleonard/orthomcl_tools,0,3,"{""Perl"": 25442, ""R"": 909}",GNU General Public License v2.0,6,1,"[orthomcl, orthologues, dollop, parsimony]",6,0,26,0,0,26,29,0,29,0 10.5281/zenodo.51363,,1,dataset,,11,,,,,,,,7,66,11,7,66,67,15918088685,67,15918088685 10.5281/zenodo.51377,,1,software,https://github.com/eteq/rgbmcmr,1,1,"{""Python"": 11835}",MIT License,0,1,[],0,1,4,1,1,4,4,5525,4,5525 10.5281/zenodo.51405,,1,dataset,,98,,,,,,,,32,128,98,32,128,133,17981621922,133,17981621922 10.5281/zenodo.51453,10.5281/zenodo.592677,1,software,https://github.com/thierrygosselin/assigner,0,3,"{""R"": 205118}",GNU General Public License v3.0,9,4,"[genomics, datascience, assignment-analysis, assignment, radseq, radseq-data, fst, gbs, genotyping-by-sequencing]",9,0,18,8,6,104,108,19890838,18,0 10.5281/zenodo.51480,10.5281/zenodo.597082,1,software,https://github.com/lingpy/lingpy,2,23,"{""Python"": 1533529, ""JavaScript"": 681706, ""HTML"": 15470, ""TeX"": 7637, ""CSS"": 6177}",,68,20,[],68,1,21,21,8,299,322,60698336,21,14411936 10.5281/zenodo.51483,,1,software,https://github.com/ceyhuneksin/epidemic_network_game_manuscript_code,0,2,"{""MATLAB"": 52444}",MIT License,0,1,[],0,0,0,0,0,0,0,0,0,0 10.5281/zenodo.51517,,1,software,https://github.com/JonnyDaenen/Gumbo,0,1,"{""Java"": 1180065, ""Python"": 3530, ""ANTLR"": 1990, ""Shell"": 986}",,2,1,[],2,0,136,0,0,136,141,0,141,0 10.5281/zenodo.51558,,1,software,https://github.com/rschwiebert/Pomonoid,0,1,"{""Python"": 22165}",MIT License,0,0,[],0,0,8,0,0,8,8,0,8,0 10.5281/zenodo.51607,,1,publication,,18,,,,,,,,18,38,18,18,38,40,5104278,40,5104278 10.5281/zenodo.51633,10.5281/zenodo.595210,1,software,https://github.com/poormanme/smallAnimalMRgHIFU,1,4,"{""MATLAB"": 113721, ""C"": 14548}",Other,8,9,[],8,1,15,1,1,15,15,95745113,15,95745113 10.5281/zenodo.51686,,1,software,https://github.com/jareeger/Smooth_Closed_Surface_Quadrature_RBF-julia,0,0,"{""Julia"": 157659}",GNU General Public License v3.0,0,1,[],0,0,7,0,0,7,7,0,7,0 10.5281/zenodo.51687,,1,software,https://github.com/jareeger/Smooth_Closed_Surface_Quadrature_RBF-python,1,1,"{""Python"": 176850}",GNU General Public License v3.0,1,1,[],1,1,5,1,1,5,5,42506,5,42506 10.5281/zenodo.51688,,1,dataset,,2,,,,,,,,2,16,2,2,16,16,110112714,16,110112714 10.5281/zenodo.51708,,1,software,https://github.com/marcottelab/Gene-Ages,7,2,"{""Jupyter Notebook"": 944695, ""Python"": 42844}",MIT License,4,8,[],4,7,52,7,7,52,59,73994368,59,73994368 10.5281/zenodo.51734,10.5281/zenodo.595022,1,software,https://github.com/ijpb/MorphoLibJ,2,26,"{""Java"": 2920435, ""Shell"": 123}",GNU Lesser General Public License v3.0,40,15,[],40,1,6,73,41,298,330,1173325943,6,27644162 10.5281/zenodo.51746,10.5281/zenodo.593317,1,software,https://github.com/Ehsanizadi/Geo-Bullet,0,,,,,,,,0,32,0,0,39,50,0,38,0 10.5281/zenodo.51860,,1,software,,0,,,,,,,,0,34,0,0,34,34,0,34,0 10.5281/zenodo.519752,10.5281/zenodo.599145,1,dataset,,7,,,,,,,,4,38,7,4,38,39,4329697184,39,4329697184 10.5281/zenodo.523759,,1,publication,,5,,,,,,,,4,9,5,4,9,10,15753975,10,15753975 10.5281/zenodo.52569,,1,dataset,,1,,,,,,,,1,6,1,1,6,6,30205,6,30205 10.5281/zenodo.528674,,1,software,https://github.com/frantisekvasa/structural_network_development,0,2,"{""R"": 103992}",MIT License,6,5,[],6,0,4,0,0,4,4,0,4,0 10.5281/zenodo.52994,,1,dataset,,287,,,,,,,,78,374,287,78,374,403,91526399306,403,91526399306 10.5281/zenodo.53078,10.5281/zenodo.592119,1,software,https://github.com/biocaddie/WG3-MetadataSpecifications,2,11,"{""Python"": 6643}",,21,35,"[data-discovery, dats-model, data-modeling, json-schemas, json-ld, schema-org]",21,2,41,44,38,896,1010,238354936,44,2540630 10.5281/zenodo.53099,10.5281/zenodo.594904,1,software,https://github.com/houghb/savvy,2,5,"{""Jupyter Notebook"": 1515461, ""Python"": 70527}","BSD 2-Clause ""Simplified"" License",27,8,[],27,2,30,2,2,67,72,28940698,32,28940698 10.5281/zenodo.53112,10.5281/zenodo.592893,1,software,https://github.com/gap-packages/Semigroups,10,15,"{""GAP"": 4575262, ""C++"": 181065, ""M4"": 66955, ""Shell"": 8789, ""Objective-C"": 7106, ""Python"": 3978, ""C"": 2554, ""Makefile"": 2155}",Other,16,9,"[semigroups, monoids, enumeration, greens-relations, congruences, maximal-subsemigroups, finitely-presented-semigroups]",16,7,12,237,27,118,139,242381218,12,5535300 10.5281/zenodo.53168,,1,software,,64,,,,,,,,33,54,64,33,54,55,30694129,55,30694129 10.5281/zenodo.53169,,1,dataset,,1059,,,,,,,,541,1849,1059,541,1849,2042,563679243429,2042,563679243429 10.5281/zenodo.53226,,1,dataset,,10,,,,,,,,7,22,10,7,22,22,2646502,22,2646502 10.5281/zenodo.53227,,1,dataset,,1,,,,,,,,1,20,1,1,20,20,247463,20,247463 10.5281/zenodo.535768,,1,publication,,0,,,,,,,,0,5,0,0,5,5,0,5,0 10.5281/zenodo.53739,,1,software,https://github.com/JusteRaimbault/TorPool,0,0,"{""Java"": 26671, ""Scala"": 6735, ""Python"": 4429, ""Shell"": 246}",,0,1,[],0,0,4,0,0,4,4,0,4,0 10.5281/zenodo.53764,,1,dataset,,37,,,,,,,,28,109,37,28,109,114,34524245527,114,34524245527 10.5281/zenodo.53766,,1,software,https://github.com/fresan/nri,0,0,"{""C++"": 15148, ""Makefile"": 136}",MIT License,1,2,[],1,0,9,0,0,9,9,0,9,0 10.5281/zenodo.53787,,1,software,https://github.com/josemiotto/pylevy,5,10,"{""Python"": 23944}",GNU General Public License v3.0,10,6,[],10,5,20,5,5,20,20,40128320,20,40128320 10.5281/zenodo.53834,,1,software,https://github.com/F1000Research/docker-builds,1,0,"{""Perl"": 108671, ""Python"": 96711, ""C"": 9692, ""R"": 8613, ""Shell"": 114}",,0,1,[],0,1,36,1,1,36,36,15929644,36,15929644 10.5281/zenodo.53849,10.5281/zenodo.594191,1,software,https://github.com/Parallel-in-Time/pySDC,4,9,"{""Python"": 1733889, ""Shell"": 5555}","BSD 2-Clause ""Simplified"" License",10,10,"[parallel-in-time, python, iterative-methods, parallel-computing, partial-differential-equations, ordinary-differential-equations, collocation-method, multigrid, pfasst, spectral-deferred-corrections]",10,3,21,24,7,57,77,43119494,22,1088028 10.5281/zenodo.53861,,1,software,https://github.com/F1000Research/paraat,0,0,"{""Perl"": 72849}",,0,1,[],0,0,12,0,0,12,12,0,12,0 10.5281/zenodo.53888,,1,software,https://github.com/casmlab/purpletag,1,2,"{""Python"": 24200, ""Makefile"": 1283, ""HTML"": 1113}","BSD 3-Clause ""New"" or ""Revised"" License",9,9,[],9,1,24,1,1,24,25,123978,25,123978 10.5281/zenodo.53894,,1,dataset,,777,,,,,,,,507,2154,777,507,2154,2340,17528506395,2340,17528506395 10.5281/zenodo.53983,,1,dataset,,0,,,,,,,,0,15,0,0,15,15,0,15,0 10.5281/zenodo.54010,10.5281/zenodo.592119,1,software,https://github.com/biocaddie/WG3-MetadataSpecifications,4,11,"{""Python"": 6643}",,21,35,"[data-discovery, dats-model, data-modeling, json-schemas, json-ld, schema-org]",21,4,77,44,38,896,1010,238354936,78,9034016 10.5281/zenodo.54544,,1,software,https://github.com/spholmes/F1000_workflow,12,18,"{""HTML"": 9564861, ""TeX"": 283170, ""R"": 29845}",,23,8,[],23,12,126,12,12,126,130,28787904,130,28787904 10.5281/zenodo.54551,,1,dataset,,9,,,,,,,,9,52,9,9,52,59,24625161,59,24625161 10.5281/zenodo.54562,10.5281/zenodo.595269,1,software,https://github.com/synergynet/synergynet3.1,1,2,"{""Java"": 2999914, ""HTML"": 15758, ""CSS"": 5081, ""GLSL"": 1243}","BSD 3-Clause ""New"" or ""Revised"" License",5,2,"[education, multitouch, java, networking, jme3]",5,1,11,1,1,13,13,113847347,11,113847347 10.5281/zenodo.545655,10.5281/zenodo.598373,1,software,https://github.com/akohlmey/topotools,87,9,"{""Tcl"": 183633, ""Makefile"": 478}",Other,11,5,[],11,84,547,111,108,867,930,6043983,583,4663983 10.5281/zenodo.54567,,1,software,,3,,,,,,,,3,44,3,3,44,45,19629,45,19629 10.5281/zenodo.545765,,1,lesson,https://github.com/eBioKit/tutorials,0,0,{},Other,1,1,"[bioinformatics, tutorials, learning]",1,0,4,0,0,4,4,0,4,0 10.5281/zenodo.545780,,1,dataset,,0,,,,,,,,0,8,0,0,8,8,0,8,0 10.5281/zenodo.545834,,1,dataset,,3,,,,,,,,2,6,3,2,6,6,493983,6,493983 10.5281/zenodo.546110,,1,dataset,,192,,,,,,,,80,501,192,80,501,556,51055630782,556,51055630782 10.5281/zenodo.546111,,1,software,https://github.com/OpenTreeOfLife/reference-taxonomy,0,12,"{""Python"": 437797, ""Java"": 383116, ""Roff"": 27412, ""Makefile"": 27177, ""Shell"": 14589, ""HTML"": 3073}","BSD 2-Clause ""Simplified"" License",5,22,[],5,0,9,0,0,9,9,0,9,0 10.5281/zenodo.546241,10.5281/zenodo.598242,1,software,https://github.com/phil-mansfield/shellfish,0,2,"{""Go"": 494642, ""Python"": 27663, ""Shell"": 865}",MIT License,6,5,[],6,0,2,0,0,14,14,0,2,0 10.5281/zenodo.546270,10.5281/zenodo.596724,1,software,https://github.com/kyleniemeyer/PyTeCK,1,6,"{""Python"": 151557}",MIT License,5,4,[],5,1,15,2,2,26,30,132335,17,65653 10.5281/zenodo.546311,,1,software,https://github.com/FowlerLab/simdms,0,0,"{""Python"": 28433}",GNU General Public License v3.0,2,3,[],2,0,17,0,0,17,17,0,17,0 10.5281/zenodo.546330,,1,publication,,1,,,,,,,,1,24,1,1,24,24,564298,24,564298 10.5281/zenodo.546444,10.5281/zenodo.596087,1,software,https://github.com/paraslonic/Rakitina_etal_Crohn_paper,3,0,"{""R"": 28722, ""Perl"": 10112, ""Shell"": 4294}",,0,1,[],0,3,14,3,3,15,16,1675598232,15,1675598232 10.5281/zenodo.546698,,1,software,https://github.com/ZYBunnyHu/masonmd,0,3,"{""R"": 28895}",MIT License,4,3,[],4,0,25,0,0,25,25,0,25,0 10.5281/zenodo.546717,,1,dataset,,3,,,,,,,,2,28,3,2,28,30,3096520,30,3096520 10.5281/zenodo.54705,,1,dataset,,1,,,,,,,,1,17,1,1,17,17,5470,17,5470 10.5281/zenodo.54710,,1,dataset,,15,,,,,,,,5,29,15,5,29,29,13582331808,29,13582331808 10.5281/zenodo.54722,10.5281/zenodo.595016,1,software,https://github.com/Richardjmorton/NUWT,5,0,"{""Prolog"": 80559, ""IDL"": 63208, ""TeX"": 42384}",MIT License,2,3,[],2,4,29,8,7,56,63,1297609029,33,810971700 10.5281/zenodo.54859,,1,dataset,,1,,,,,,,,1,39,1,1,39,40,903613486,40,903613486 10.5281/zenodo.54861,,1,publication,,589,,,,,,,,470,10,589,470,10,11,10538568234,11,10538568234 10.5281/zenodo.54862,,1,publication,,47,,,,,,,,26,46,47,26,46,47,2271997108,47,2271997108 10.5281/zenodo.54863,,1,publication,,2,,,,,,,,2,3,2,2,3,3,17209882,3,17209882 10.5281/zenodo.54864,,1,publication,,6,,,,,,,,5,5,6,5,5,5,2221332,5,2221332 10.5281/zenodo.54865,,1,publication,,4,,,,,,,,4,4,4,4,4,4,4077412,4,4077412 10.5281/zenodo.54866,,1,publication,,5,,,,,,,,4,4,5,4,4,4,1486730,4,1486730 10.5281/zenodo.54867,,1,publication,,10,,,,,,,,6,8,10,6,8,8,300568640,8,300568640 10.5281/zenodo.54949,10.5281/zenodo.594444,1,software,https://github.com/simonvh/fluff,1,11,"{""Python"": 124965}",MIT License,51,9,[],51,1,12,17,5,65,76,89467554,12,6101988 10.5281/zenodo.54974,10.5281/zenodo.594493,1,software,https://github.com/erdc-cm/AutoRoutePy,2,2,"{""Python"": 108263}",,6,18,[],6,2,13,2,2,20,22,1406812,14,1406812 10.5281/zenodo.54980,,1,software,https://github.com/varennes/collectice-chemotaxis-cpm,1,0,"{""Fortran"": 57000}",,1,1,[],1,1,50,1,1,50,51,17702,51,17702 10.5281/zenodo.54990,10.5281/zenodo.636667,1,software,,2,,,,,,,,2,8,5,5,21,23,480005317,9,168467536 10.5281/zenodo.55121,10.5281/zenodo.594125,1,software,https://github.com/lem-usp/EvolQG,0,7,"{""R"": 230819, ""C++"": 3015, ""Rebol"": 963}",Other,6,3,[],6,0,24,0,0,40,42,0,25,0 10.5281/zenodo.55221,,1,software,https://github.com/nebogeo/mongoose-converter,0,0,"{""Python"": 8916}",,0,1,[],0,0,3,0,0,3,3,0,3,0 10.5281/zenodo.55222,,1,software,https://github.com/nebogeo/mongoose-web,0,0,"{""C"": 5394690, ""Scheme"": 574648, ""C++"": 245299, ""Java"": 242233, ""C#"": 55116, ""Python"": 9333, ""Makefile"": 8372, ""Racket"": 6877, ""Shell"": 1031, ""HTML"": 173, ""Batchfile"": 118}",,2,2,[],2,0,10,0,0,10,10,0,10,0 10.5281/zenodo.55227,,1,dataset,,207,,,,,,,,112,203,207,112,203,265,34542685570,265,34542685570 10.5281/zenodo.55253,10.5281/zenodo.591669,1,software,https://github.com/astropy/astroquery,2,189,"{""Python"": 2192465, ""HTML"": 977519, ""Shell"": 8576}","BSD 3-Clause ""New"" or ""Revised"" License",230,32,"[astropy, python, astropy-affiliated, astronomy]",230,2,10,37,8,638,748,106780000,10,5131986 10.5281/zenodo.55270,,1,software,https://github.com/cvitolo/r_rdefra,0,4,"{""R"": 29937, ""TeX"": 1206}",,9,7,"[r, rstats, r-package, uk, defra, air-pollution, air-quality, air-pollution-levels, peer-reviewed]",9,0,3,0,0,3,3,0,3,0 10.5281/zenodo.55273,,1,publication,,3,,,,,,,,3,15,3,3,15,15,30424116,15,30424116 10.5281/zenodo.55274,10.5281/zenodo.591508,1,software,https://github.com/F1000Research/regionReport,0,0,"{""R"": 53584}",,0,1,[],0,0,26,1,1,38,53,982302,30,0 10.5281/zenodo.55284,,1,software,https://github.com/cvitolo/r_kehra,1,1,"{""Shell"": 242917, ""R"": 59534, ""Python"": 643}",,1,1,[],1,1,14,1,1,14,15,29586,15,29586 10.5281/zenodo.55307,,1,publication,,4,,,,,,,,3,3,4,3,3,3,2105656,3,2105656 10.5281/zenodo.55333,10.5281/zenodo.592215,1,software,https://github.com/DiamondLightSource/Savu,4,33,"{""Python"": 1815024, ""Shell"": 184934, ""C"": 106387, ""QML"": 25629, ""C++"": 22334, ""HTML"": 13495, ""Makefile"": 4418, ""Roff"": 3622, ""Dockerfile"": 1635, ""Batchfile"": 733, ""CSS"": 604}",Other,17,13,[],17,3,12,70,5,80,89,6316161861,12,397860236 10.5281/zenodo.55400,10.5281/zenodo.594372,1,software,https://github.com/earlbellinger/asteroseismology,0,0,{},GNU General Public License v2.0,10,3,[],10,0,45,0,0,65,73,0,45,0 10.5281/zenodo.55427,,1,dataset,,0,,,,,,,,0,27,0,0,27,28,0,28,0 10.5281/zenodo.55439,,1,dataset,,16,,,,,,,,15,22,16,15,22,25,533918,25,533918 10.5281/zenodo.55468,,1,publication,,25,,,,,,,,19,57,25,19,57,57,2036275,57,2036275 10.5281/zenodo.55474,,1,software,,7,,,,,,,,7,46,7,7,46,46,201407,46,201407 10.5281/zenodo.55540,,1,software,https://github.com/pedroj/dispkernels,4,2,"{""HTML"": 871976, ""R"": 120915}",,2,1,[],2,4,16,4,4,16,17,1656976,17,1656976 10.5281/zenodo.55586,10.5281/zenodo.598292,1,software,https://github.com/michaelswoody/MEMLET,32,1,"{""MATLAB"": 132675}",GNU General Public License v3.0,1,3,[],1,32,171,46,39,199,213,2577115226,173,1751066688 10.5281/zenodo.555927,10.5281/zenodo.596342,1,software,https://github.com/DLR-SC/prov-comics,0,0,"{""JavaScript"": 34787, ""CSS"": 8261, ""HTML"": 1927}",Apache License 2.0,1,6,"[quantified-self, visualization, hci, data-visualization, comics, provenance, prov-comics]",1,0,10,0,0,10,10,0,10,0 10.5281/zenodo.555947,,1,dataset,,3,,,,,,,,3,21,3,3,21,22,67479,22,67479 10.5281/zenodo.555949,10.5281/zenodo.594587,1,software,https://github.com/flav-io/flavio,9,19,"{""Python"": 1025564, ""Makefile"": 54358}",MIT License,29,8,"[flavour-physics, python, hep, physics, high-energy-physics, particle-physics, eft]",29,7,23,431,35,629,728,294614165,23,6679017 10.5281/zenodo.55595,10.5281/zenodo.594712,1,software,https://github.com/pyGSTio/pyGSTi,6,17,"{""Jupyter Notebook"": 23883610, ""Python"": 6757435, ""TeX"": 1514933, ""HTML"": 884344, ""C++"": 112673, ""CSS"": 81554, ""JavaScript"": 33797, ""Shell"": 2250}",Other,30,12,"[tomography, qcvv, quantum-computing, characterization, gst]",30,5,17,65,18,116,139,1255537258,18,138376698 10.5281/zenodo.55601,10.5281/zenodo.595859,1,software,https://github.com/msmbuilder/msmbuilder,0,65,"{""Python"": 1081940, ""C"": 96800, ""C++"": 60420, ""Shell"": 2815, ""HTML"": 1194, ""Batchfile"": 47}",GNU Lesser General Public License v2.1,91,24,"[molecular-dynamics, python, msmbuilder, dimensionality-reduction, hmm, feature-extraction, tica, pca, markov-model, clustering, analysis]",91,0,11,1,1,100,101,1114691,11,0 10.5281/zenodo.55604,,1,video,,46,,,,,,,,36,158,46,36,158,164,12938786574,164,12938786574 10.5281/zenodo.556084,,1,publication,,0,,,,,,,,0,4,0,0,4,4,0,4,0 10.5281/zenodo.556110,,1,dataset,,15,,,,,,,,15,64,15,15,64,66,222775260,66,222775260 10.5281/zenodo.556162,,1,software,https://github.com/BiobankLab/DIFFIND,1,0,"{""Python"": 13840}",Apache License 2.0,0,2,"[dendrograms, genomes-similarity]",0,1,18,1,1,18,18,9118,18,9118 10.5281/zenodo.55617,,1,publication,,12,,,,,,,,12,44,12,12,44,44,6621456,44,6621456 10.5281/zenodo.556217,,1,software,https://github.com/BenLangmead/qtip,0,6,"{""C++"": 224703, ""Python"": 136883, ""Makefile"": 8422, ""C"": 5060, ""Shell"": 3774}",MIT License,23,4,"[bioinformatics, genomics]",23,0,3,0,0,3,3,0,3,0 10.5281/zenodo.556343,,1,software,https://github.com/jianyangqt/gwasMP,4,1,"{""R"": 13851, ""JavaScript"": 437}",GNU General Public License v3.0,1,3,[],1,4,40,4,4,40,40,29183068,40,29183068 10.5281/zenodo.556368,,1,dataset,,0,,,,,,,,0,32,0,0,32,32,0,32,0 10.5281/zenodo.556370,10.5281/zenodo.594730,1,software,https://github.com/alessandrofelder/pangolin,1,0,"{""R"": 35960}",GNU General Public License v3.0,0,1,"[scaling, biology, r, phylogenetics]",0,1,9,1,1,9,12,24155,12,24155 10.5281/zenodo.556409,10.5281/zenodo.592765,1,software,https://github.com/odlgroup/odl,2,59,"{""Python"": 3520120, ""Shell"": 3232, ""Batchfile"": 51}",Mozilla Public License 2.0,125,14,"[mathematics, prototyping, optimization, inverse-problems, tomography, discretization, python, imaging]",125,1,20,11,4,130,151,18515398,21,2822830 10.5281/zenodo.556462,,1,software,https://github.com/mountaindust/Parasitoids,1,0,"{""Python"": 298800}",GNU General Public License v3.0,0,4,[],0,1,10,1,1,10,11,1920773,11,1920773 10.5281/zenodo.556602,10.5281/zenodo.596872,1,software,https://github.com/dengwirda/jigsaw-geo-matlab,4,15,"{""C++"": 2673849, ""MATLAB"": 379473, ""C"": 43786, ""CMake"": 3348}",Other,19,7,"[mesh-generation, delaunay-refinement, delaunay-triangulation, triangulation, voronoi-tessellation, geoscience, earth-science, matlab]",19,3,28,4,3,32,33,12730700,29,12730700 10.5281/zenodo.556727,,1,dataset,,23,,,,,,,,13,580,23,13,580,585,5656846249,585,5656846249 10.5281/zenodo.556775,,1,dataset,,69,,,,,,,,44,325,69,44,325,354,1210639852,354,1210639852 10.5281/zenodo.556929,,1,publication,,7,,,,,,,,7,14,7,7,14,14,27850795,14,27850795 10.5281/zenodo.557057,10.5281/zenodo.592093,1,software,https://github.com/mengomarlene/opti4Abq,1,6,"{""Python"": 47234, ""TeX"": 16576}",Other,5,3,[],5,1,12,16,12,168,188,156471513,12,13987195 10.5281/zenodo.55715,,1,software,,5,,,,,,,,5,58,5,5,58,58,193570405,58,193570405 10.5281/zenodo.55753,,1,publication,,361,,,,,,,,325,265,361,325,265,284,1592925857,284,1592925857 10.5281/zenodo.55760,10.5281/zenodo.594209,1,software,https://github.com/lvclark/tagdigger,0,3,"{""Python"": 137070}",,3,3,[],3,0,15,2,2,21,25,86128,15,0 10.5281/zenodo.55773,10.5281/zenodo.595396,1,software,https://github.com/katholt/Kaptive,1,4,"{""Python"": 85482}",GNU General Public License v3.0,7,6,[],7,1,17,5,3,25,26,43305281,17,3334145 10.5281/zenodo.55783,,1,software,https://github.com/ErillLab/MetagenomeRegulatoryAnalysis,0,0,"{""Python"": 147102}",GNU General Public License v3.0,0,3,[],0,0,5,0,0,5,5,0,5,0 10.5281/zenodo.55847,,1,dataset,,0,,,,,,,,0,17,0,0,17,17,0,17,0 10.5281/zenodo.55853,,1,dataset,,96,,,,,,,,93,4797,96,93,4797,5767,75760608,5767,75760608 10.5281/zenodo.56147,,1,publication,,61,,,,,,,,55,75,61,55,75,77,13491553,77,13491553 10.5281/zenodo.56149,,1,publication,,8,,,,,,,,8,17,8,8,17,17,1915920,17,1915920 10.5281/zenodo.56150,,1,publication,,50,,,,,,,,47,52,50,47,52,54,17805000,54,17805000 10.5281/zenodo.56151,,1,publication,,17,,,,,,,,17,11,17,17,11,11,5425193,11,5425193 10.5281/zenodo.56152,,1,publication,,140,,,,,,,,140,54,140,140,54,56,233847740,56,233847740 10.5281/zenodo.56153,,1,publication,,40,,,,,,,,37,45,40,37,45,47,55596640,47,55596640 10.5281/zenodo.56154,,1,publication,,13,,,,,,,,11,14,13,11,14,14,5477511,14,5477511 10.5281/zenodo.56167,10.5281/zenodo.595425,1,software,https://github.com/leewujung/beampattern_processing,1,4,"{""MATLAB"": 188021}",Apache License 2.0,6,2,[],6,1,11,1,1,20,22,1618587,11,1618587 10.5281/zenodo.56247,10.5281/zenodo.592804,1,software,https://github.com/ppenteado/pp_lib,1,2,"{""IDL"": 301762, ""Prolog"": 66865, ""HTML"": 5338}",GNU General Public License v2.0,4,2,[],4,1,19,2,2,38,41,7038250,21,4684261 10.5281/zenodo.56311,,1,software,https://github.com/MaayanLab/Zika-RNAseq-Pipeline,149,40,"{""Jupyter Notebook"": 3413029, ""Python"": 20782, ""Shell"": 20247, ""Dockerfile"": 1724, ""R"": 1614}",,56,19,"[rna-seq, rna-seq-analysis, pipeline, notebook, jupyter-notebook, bioinformatics-pipeline]",56,140,1041,149,140,1041,1080,482753742,1080,482753742 10.5281/zenodo.56358,,1,dataset,,21,,,,,,,,16,28,21,16,28,28,17220312,28,17220312 10.5281/zenodo.56369,10.5281/zenodo.594860,1,software,https://github.com/bluescarni/piranha,0,17,"{""C++"": 3215027, ""Python"": 125842, ""CMake"": 56030, ""Shell"": 5725}",Other,65,7,"[c-plus-plus, python, computer-algebra, computer-algebra-system, physics, cas, astrodynamics, celestial-mechanics]",65,0,0,12,12,185,229,12930648,0,0 10.5281/zenodo.56416,10.5281/zenodo.593972,1,software,https://github.com/ashander/phenoecosim,0,0,"{""R"": 52727, ""C++"": 20172}",MIT License,1,1,"[dissertation, r, c-plus-plus, evolutionary, simulation]",1,0,10,0,0,14,14,0,10,0 10.5281/zenodo.56457,10.5281/zenodo.594166,1,software,https://github.com/thorstenwagner/ij-particlesizer,2,1,"{""Java"": 50137}",MIT License,0,2,[],0,2,21,26,26,234,268,487913,22,36678 10.5281/zenodo.56492,,1,dataset,,0,,,,,,,,0,16,0,0,16,16,0,16,0 10.5281/zenodo.56496,,1,software,,1,,,,,,,,1,29,1,1,29,29,1961153,29,1961153 10.5281/zenodo.56534,,1,dataset,,143,,,,,,,,73,141,143,73,141,152,3972045770,152,3972045770 10.5281/zenodo.56569,10.5281/zenodo.592111,1,software,https://github.com/bcmd/bsx,3,0,{},Creative Commons Attribution 4.0 International,0,2,[],0,3,8,3,3,9,9,51277479,8,51277479 10.5281/zenodo.56582,10.5281/zenodo.596362,1,software,https://github.com/WMBEdmands/CompMS2miner,0,8,"{""R"": 697010}",,7,4,[],7,0,11,1,1,74,80,84670596,11,0 10.5281/zenodo.56704,,1,dataset,,8,,,,,,,,8,36,8,8,36,37,993016,37,993016 10.5281/zenodo.56714,10.5281/zenodo.595364,1,software,https://github.com/juliasilge/tidytext,6,147,"{""R"": 86346, ""TeX"": 3239}",Other,772,63,"[text-mining, r, tidyverse, tidy-data, natural-language-processing]",772,6,148,23,16,285,307,270414168,154,20306412 10.5281/zenodo.56731,,1,dataset,,0,,,,,,,,0,12,0,0,12,14,0,14,0 10.5281/zenodo.56735,10.5281/zenodo.637862,1,dataset,,120,,,,,,,,81,80,120,81,80,92,66917834040,92,66917834040 10.5281/zenodo.56736,10.5281/zenodo.595524,1,software,https://github.com/BauhausLuftfahrt/PAXelerate,1,0,"{""Java"": 1728670}",Eclipse Public License 1.0,3,3,"[agent-based-modeling, agent-based-simulation, aircraft, cabin, boarding-simulation, eclipse-modeling, boarding]",3,1,35,1,1,36,38,19542833,36,19542833 10.5281/zenodo.56738,,1,software,https://github.com/rhshah/IMPACT-SV,1,2,"{""Perl"": 260213, ""Python"": 13430}",Apache License 2.0,7,2,[],7,1,22,1,1,22,23,57811,23,57811 10.5281/zenodo.56825,10.5281/zenodo.592782,1,software,https://github.com/csdms-contrib/slepian_alpha,4,18,"{""MATLAB"": 801582, ""M"": 9039}",Other,10,9,[],10,2,12,16,11,47,48,6622167,12,1667260 10.5281/zenodo.56828,,1,software,https://github.com/CoryFunk/AMP-AD-scripts,0,0,"{""Perl"": 1986, ""R"": 328}","BSD 3-Clause ""New"" or ""Revised"" License",0,1,[],0,0,22,0,0,22,22,0,22,0 10.5281/zenodo.569034,10.5281/zenodo.598242,1,software,https://github.com/phil-mansfield/shellfish,0,2,"{""Go"": 494642, ""Python"": 27663, ""Shell"": 865}",MIT License,6,5,[],6,0,12,0,0,14,14,0,12,0 10.5281/zenodo.569079,10.5281/zenodo.596810,1,software,https://github.com/ecohealthalliance/HP3,9,3,"{""HTML"": 3515039, ""R"": 117781, ""Makefile"": 4008}",MIT License,6,8,"[eha-modeling-analytics, eha-predict]",6,9,88,63,58,479,499,13956108408,88,1845648396 10.5281/zenodo.56923,,1,publication,,22,,,,,,,,21,15,22,21,15,15,7245744,15,7245744 10.5281/zenodo.56924,,1,publication,,44,,,,,,,,44,121,44,44,121,124,7836752,124,7836752 10.5281/zenodo.569334,,1,software,https://github.com/smoh/gaia-comoving-stars,1,1,"{""Jupyter Notebook"": 21149591, ""TeX"": 471962, ""Python"": 91406, ""Shell"": 5583, ""Makefile"": 1785}",MIT License,6,4,[],6,1,9,1,1,9,9,3608182,9,3608182 10.5281/zenodo.56934,,1,software,https://github.com/dib-lab/horse_trans,2,1,"{""Shell"": 303248, ""Perl"": 197896, ""R"": 35841, ""Python"": 8730, ""Perl 6"": 2271, ""Awk"": 1379}",,2,20,[],2,2,36,2,2,36,36,378191204,36,378191204 10.5281/zenodo.569351,10.5281/zenodo.597345,1,software,https://github.com/cjvogl/finite_volume_seismic_model,6,2,"{""Python"": 275144, ""Fortran"": 220689, ""Makefile"": 10822}",GNU General Public License v3.0,4,3,[],4,5,12,9,5,12,13,1430436,13,953274 10.5281/zenodo.569453,10.5281/zenodo.603935,1,dataset,,2,,,,,,,,2,27,2,2,27,27,77004368,27,77004368 10.5281/zenodo.569486,,1,video,,1,,,,,,,,1,15,1,1,15,15,118357954,15,118357954 10.5281/zenodo.569512,,1,presentation,,6,,,,,,,,6,10,6,6,10,10,31816356,10,31816356 10.5281/zenodo.569601,10.5281/zenodo.797943,1,dataset,,754,,,,,,,,164,1732,5363,629,4660,5554,39539849955,1815,4239627763 10.5281/zenodo.569817,,1,dataset,,2173,,,,,,,,1813,352,2173,1813,352,383,137922260,383,137922260 10.5281/zenodo.569884,10.5281/zenodo.598213,1,software,https://github.com/dcnieho/ViveTestCodeData,48,0,"{""Python"": 38387, ""MATLAB"": 31727}",,1,2,[],1,47,428,48,47,428,445,273144480,445,273144480 10.5281/zenodo.569935,,1,software,https://github.com/Childs-Lab/GC_specific_MAKER,0,1,"{""Perl"": 33864, ""Python"": 11283, ""Shell"": 5582}",MIT License,3,2,"[annotation, genomics, bioinformatics]",3,0,9,0,0,9,9,0,9,0 10.5281/zenodo.569966,10.5281/zenodo.598366,1,software,https://github.com/epatters/Catlab,3,0,"{""Julia"": 267403}",Other,24,5,[],24,3,34,11,7,36,49,1188694,45,227394 10.5281/zenodo.569984,,1,publication,,14,,,,,,,,14,36,14,14,36,36,13022198,36,13022198 10.5281/zenodo.570008,,1,software,https://github.com/shortlab/2017-IHTFP-Loop-Testing,0,0,"{""Java"": 46289, ""Python"": 15232}",GNU Lesser General Public License v2.1,0,3,[],0,0,8,0,0,8,8,0,8,0 10.5281/zenodo.570063,,1,dataset,,27,,,,,,,,12,26,27,12,26,30,32409130779,30,32409130779 10.5281/zenodo.570115,10.5281/zenodo.604788,1,publication,,45,,,,,,,,17,115,45,17,115,118,27786483,118,27786483 10.5281/zenodo.570174,10.5281/zenodo.598347,1,software,https://github.com/vjcitn/ogttMetrics,1,1,"{""R"": 44707}",,1,1,[],1,1,14,2,1,19,21,128637,14,66672 10.5281/zenodo.57021,10.5281/zenodo.594859,1,software,https://github.com/BaderLab/AutoAnnotateApp,1,0,"{""Java"": 503216}",GNU Lesser General Public License v2.1,5,2,"[cytoscape, java]",5,1,43,1,1,84,95,1154308,43,1154308 10.5281/zenodo.570535,,1,dataset,,17,,,,,,,,12,81,17,12,81,87,296684741,87,296684741 10.5281/zenodo.570579,10.5281/zenodo.593978,1,software,https://github.com/AndrewLJackson/SIBER,8,8,"{""R"": 106703}",,12,15,[],12,8,52,12,12,84,85,7302764,52,5276304 10.5281/zenodo.570936,,1,publication,,5,,,,,,,,5,17,5,5,17,17,4317155,17,4317155 10.5281/zenodo.570938,,1,publication,,1,,,,,,,,1,11,1,1,11,11,943651,11,943651 10.5281/zenodo.570944,,1,publication,,17,,,,,,,,17,33,17,17,33,33,11976279,33,11976279 10.5281/zenodo.570956,10.5281/zenodo.594644,1,software,https://github.com/izhbannikov/haploR,0,4,"{""R"": 26004}",,2,1,[],2,0,7,0,0,16,16,0,7,0 10.5281/zenodo.570957,,1,software,https://github.com/BenLangmead/qtip-experiments,0,0,"{""Makefile"": 92137, ""Python"": 76473, ""Shell"": 53090, ""Awk"": 4121}",MIT License,0,2,[],0,0,5,0,0,5,5,0,5,0 10.5281/zenodo.570960,10.5281/zenodo.595151,1,software,https://github.com/izhbannikov/haploR_examples,5,0,"{""R"": 947}",,0,1,[],0,5,22,5,5,27,27,95905,22,95905 10.5281/zenodo.570984,,1,software,https://github.com/Niemeyer-Research-Group/1DSweptCUDA,3,1,"{""Cuda"": 96678, ""HTML"": 67844, ""Python"": 60359, ""C++"": 44174, ""Makefile"": 1141, ""Shell"": 964}",MIT License,2,2,[],2,3,16,3,3,16,17,43413933,17,43413933 10.5281/zenodo.571063,,1,software,https://github.com/aleruete/Daily-Occupancy-Site-Use-Model,0,0,"{""R"": 51267}",,1,2,[],1,0,11,0,0,11,11,0,11,0 10.5281/zenodo.571179,,1,dataset,,7,,,,,,,,7,61,7,7,61,66,925246,66,925246 10.5281/zenodo.571180,10.5281/zenodo.595808,1,software,https://github.com/rinde/RinLog,0,6,"{""Java"": 484031, ""R"": 1437}",Other,6,2,[],6,0,7,3,3,36,37,426862,7,0 10.5281/zenodo.571181,,1,dataset,,38,,,,,,,,2,24,38,2,24,26,437100983,26,437100983 10.5281/zenodo.571185,10.5281/zenodo.596766,1,software,https://github.com/justincbagley/PIrANHA,1,0,"{""Shell"": 1149676, ""Perl"": 25867, ""HTML"": 11116, ""R"": 10929}",Other,0,1,"[phylogeny, phylogeography, shell, r, bayesian-inference, maximum-likelihood, snps, population-structure, supercomputer, ssh]",0,1,23,19,7,54,61,13531825,23,1483040 10.5281/zenodo.57133,,1,software,https://github.com/chentianran/libtropicana,0,0,"{""C++"": 32965, ""CMake"": 1698}",GNU Lesser General Public License v3.0,0,1,[],0,0,9,0,0,9,9,0,9,0 10.5281/zenodo.571358,,1,publication,,3,,,,,,,,3,13,3,3,13,13,1194981,13,1194981 10.5281/zenodo.571409,,1,software,https://github.com/locutus3009/srp2,0,0,"{""C++"": 29544, ""Makefile"": 405}",GNU General Public License v3.0,0,1,[],0,0,2,0,0,2,2,0,2,0 10.5281/zenodo.571413,,1,publication,,3,,,,,,,,2,7,3,2,7,7,2369163,7,2369163 10.5281/zenodo.571414,,1,publication,,2,,,,,,,,2,6,2,2,6,6,1350224,6,1350224 10.5281/zenodo.571421,,1,software,https://github.com/CamFlow/cytoscape.js-prov,0,6,"{""JavaScript"": 29095, ""HTML"": 8520}",GNU General Public License v2.0,0,3,"[provenance, visualiser, visualizer, visualization, visualisation, javascript, cytoscapejs, cytoscapejs-extension]",0,0,10,0,0,10,10,0,10,0 10.5281/zenodo.571427,10.5281/zenodo.592954,1,software,https://github.com/CamFlow/camflow-dev,7,7,"{""C"": 517546, ""M4"": 28552, ""Ruby"": 25703, ""Makefile"": 16387, ""Python"": 8705, ""C++"": 2513}",GNU General Public License v2.0,9,4,"[kernel, provenance, linux, linux-kernel, camflow, linuxprovenance]",9,4,4,158,19,51,55,655044487,4,2345483 10.5281/zenodo.571433,10.5281/zenodo.597821,1,software,https://github.com/CamFlow/camflow-query,0,1,"{""C++"": 1838, ""C"": 1117, ""Makefile"": 1057}",GNU General Public License v2.0,3,2,"[provenance, linux, compliance]",3,0,0,0,0,10,11,0,0,0 10.5281/zenodo.571458,,1,publication,,3,,,,,,,,3,11,3,3,11,11,1140555,11,1140555 10.5281/zenodo.571598,,1,software,https://github.com/pontusfischer/RoadrunnerI,2,0,"{""Python"": 2872116}",GNU General Public License v3.0,0,1,[],0,2,36,2,2,36,40,3303796,40,3303796 10.5281/zenodo.572021,,1,software,,1,,,,,,,,1,10,1,1,10,10,1437,10,1437 10.5281/zenodo.572279,,1,software,,11,,,,,,,,6,21,11,6,21,21,34696,21,34696 10.5281/zenodo.572345,,1,dataset,,260,,,,,,,,62,325,260,62,325,351,50085560366,351,50085560366 10.5281/zenodo.572395,,1,software,,3,,,,,,,,3,39,3,3,39,39,399744,39,399744 10.5281/zenodo.572622,,1,publication,,9,,,,,,,,9,14,9,9,14,14,5001120,14,5001120 10.5281/zenodo.572633,,1,publication,,6,,,,,,,,5,9,6,5,9,9,3125490,9,3125490 10.5281/zenodo.57265,10.5281/zenodo.592789,1,dataset,https://github.com/enram/case-study,25,4,{},Creative Commons Zero v1.0 Universal,5,10,[],5,9,133,25,9,133,155,2474427675,155,2474427675 10.5281/zenodo.572990,,1,software,,1,,,,,,,,1,10,1,1,10,10,46536,10,46536 10.5281/zenodo.573254,,1,software,https://github.com/PreCyte/iCAPmanuscript2017,2,0,"{""R"": 216411}",,0,4,[],0,2,23,2,2,23,23,2377974,23,2377974 10.5281/zenodo.573255,,1,software,https://github.com/miklos1/instant,0,0,"{""Python"": 132537, ""C"": 59407, ""Shell"": 209}",Other,0,1,[],0,0,2,0,0,2,2,0,2,0 10.5281/zenodo.573266,10.5281/zenodo.597531,1,software,https://github.com/FInAT/FInAT,8,5,"{""Python"": 86072, ""Makefile"": 64}",MIT License,1,11,[],1,5,4,78,17,72,79,53176977,4,5380136 10.5281/zenodo.573287,,1,software,https://github.com/miklos1/dijitso,0,0,"{""Python"": 101220, ""Shell"": 3350, ""C"": 35}",GNU Lesser General Public License v3.0,0,1,[],0,0,1,0,0,1,1,0,1,0 10.5281/zenodo.573288,,1,software,https://github.com/clsb/miles,,1,"{""Python"": 289830, ""Makefile"": 1147, ""Shell"": 803, ""Batchfile"": 237}",MIT License,0,1,[],0,,,,,,,,, 10.5281/zenodo.573371,,1,software,https://github.com/miklos1/urumi,0,0,"{""Python"": 15903}",MIT License,0,1,[],0,0,5,0,0,5,5,0,5,0 10.5281/zenodo.573372,10.5281/zenodo.596806,1,software,https://github.com/danxhuber/isoclassify,1,9,"{""Python"": 125175, ""Jupyter Notebook"": 88807}",MIT License,10,3,[],10,1,21,1,1,21,21,11202708,22,11202708 10.5281/zenodo.573580,10.5281/zenodo.597145,1,software,https://github.com/reichlab/flusight,0,7,"{""JavaScript"": 78001, ""Vue"": 30904, ""CSS"": 4930, ""Shell"": 2375, ""HTML"": 2093, ""TeX"": 853}",MIT License,22,6,"[forecasting, epidemiology, statistics, prediction, visualizer, influenza]",22,0,8,0,0,69,87,0,8,0 10.5281/zenodo.57365,,1,software,https://github.com/brisskit-uol/puppet_setup,0,0,"{""Ruby"": 429039, ""Puppet"": 326214, ""Shell"": 87309, ""Perl"": 45160, ""PHP"": 39994, ""HTML"": 27729, ""Pascal"": 5863, ""ApacheConf"": 2020}",,0,1,[],0,0,5,0,0,5,5,0,5,0 10.5281/zenodo.57374,,1,software,https://github.com/brisskit-uol/i2b2-install-procedures,2,0,"{""Shell"": 117019, ""HTML"": 69858, ""JavaScript"": 7744}",,0,8,[],0,2,14,2,2,14,14,302980,14,302980 10.5281/zenodo.573764,,1,software,,259,,,,,,,,244,804,259,244,804,839,11345754,839,11345754 10.5281/zenodo.57377,,1,software,https://github.com/brisskit-uol/caTissue-v1.2plus2.0-install-procedures,0,0,"{""Shell"": 63498, ""Python"": 3336}",,0,1,[],0,0,16,0,0,16,16,0,16,0 10.5281/zenodo.57380,,1,software,https://github.com/brisskit-uol/onyx-install-procedures,0,0,"{""Shell"": 71800, ""Perl"": 32636, ""Perl 6"": 3188}",,0,2,[],0,0,7,0,0,7,7,0,7,0 10.5281/zenodo.57384,,1,software,https://github.com/brisskit-uol/civicrm-install,0,0,"{""PHP"": 302809, ""Zimpl"": 112611, ""Shell"": 55631, ""HTML"": 3879, ""Smarty"": 693, ""CSS"": 232}",,0,8,[],0,0,13,0,0,13,13,0,13,0 10.5281/zenodo.57405,,1,software,https://github.com/CSB5/INC-Seq,0,4,"{""Python"": 54746, ""Shell"": 259}",Other,9,10,[],9,0,30,0,0,30,31,0,31,0 10.5281/zenodo.574445,10.5281/zenodo.777952,1,publication,,1,,,,,,,,1,5,12,12,319,330,71721164,5,9964755 10.5281/zenodo.57460,,1,publication,,3,,,,,,,,2,34,3,2,34,34,3831,34,3831 10.5281/zenodo.57472,10.5281/zenodo.592820,1,software,https://github.com/enram/bird-migration-flow-visualization,2,3,"{""JavaScript"": 157595, ""HTML"": 47093, ""CSS"": 2699}",MIT License,16,14,[oscibio],16,2,87,2,2,87,93,2337120,93,2337120 10.5281/zenodo.574901,,1,software,https://github.com/remi-daigle/ohi-canada-data-wrangling,1,0,"{""R"": 64946}",,0,1,[],0,1,8,1,1,8,8,16815837,8,16815837 10.5281/zenodo.574902,,1,software,https://github.com/remi-daigle/ohi-canada,0,0,{},GNU General Public License v2.0,0,1,[],0,0,17,0,0,17,17,0,17,0 10.5281/zenodo.575664,10.5281/zenodo.596910,1,software,https://github.com/rorynolan/exampletestr,0,2,"{""R"": 55407, ""TeX"": 18772, ""CSS"": 1335}",GNU General Public License v3.0,16,1,[],16,0,32,0,0,41,42,0,32,0 10.5281/zenodo.576013,,1,publication,,8,,,,,,,,8,23,8,8,23,23,9522616,23,9522616 10.5281/zenodo.576345,,1,dataset,,8,,,,,,,,4,21,8,4,21,24,11649556528,24,11649556528 10.5281/zenodo.576367,,1,software,https://github.com/srv/merbots_ibvs,0,1,"{""C++"": 36718, ""CMake"": 2836, ""MATLAB"": 2526, ""Python"": 712}",GNU General Public License v3.0,4,10,[],4,0,10,0,0,10,10,0,10,0 10.5281/zenodo.576370,,1,software,https://github.com/srv/merbots_tracking,0,0,"{""C++"": 208685, ""CMake"": 4241}",GNU General Public License v3.0,1,9,[],1,0,3,0,0,3,3,0,3,0 10.5281/zenodo.576389,10.5281/zenodo.597605,1,software,https://github.com/rinde/vanLon17-JAAMAS-code,2,2,"{""Java"": 76914, ""R"": 14046, ""Shell"": 2657}",Other,1,1,[],1,2,19,3,3,32,41,173845,27,116348 10.5281/zenodo.57750,,1,software,https://github.com/Cadarn/bayesBlocks,1,0,"{""Jupyter Notebook"": 25914, ""Python"": 19886}",,0,1,[],0,1,19,1,1,19,19,148825,19,148825 10.5281/zenodo.57821,10.5281/zenodo.598046,1,software,https://github.com/jradavenport/appaloosa,1,7,"{""Python"": 217904, ""Shell"": 3595}",Other,5,2,[],5,1,175,1,1,200,202,280784,175,280784 10.5281/zenodo.57847,,1,publication,,14,,,,,,,,13,58,14,13,58,58,23520812,58,23520812 10.5281/zenodo.57882,10.5281/zenodo.592838,1,software,https://github.com/hyperspy/hyperspy,10,114,"{""Python"": 4216839, ""Jupyter Notebook"": 100688, ""Batchfile"": 103, ""C"": 29}",GNU General Public License v3.0,201,24,"[python, data-visualization, data-analysis, multi-dimensional]",201,7,67,242,81,2655,3590,8969539634,69,202726110 10.5281/zenodo.579637,,1,software,https://github.com/ratt-ru/toothless,2,2,"{""Python"": 10556}",GNU General Public License v2.0,2,15,"[caffe, radio-galaxies, convolutional-neural-networks, radio-galaxy-classification]",2,1,21,2,1,21,21,2169968,21,2169968 10.5281/zenodo.579640,10.5281/zenodo.604643,1,dataset,,0,,,,,,,,0,0,53,10,13,13,1310738,0,0 10.5281/zenodo.57968,,1,software,https://github.com/mlxd/GPUE,0,3,"{""C++"": 116972, ""Cuda"": 56600, ""Python"": 54107, ""MATLAB"": 33846, ""C"": 14871, ""Shell"": 12598, ""Makefile"": 3337}",Other,11,5,"[simulation, bec, equation-solver, schrodinger, bose-einstein-condensate, cuda, gpu, physics, quantum]",11,0,14,0,0,14,14,0,14,0 10.5281/zenodo.579891,10.5281/zenodo.597928,1,software,https://github.com/ICB-DCM/AMICI,19,10,"{""C++"": 1327148, ""MATLAB"": 436747, ""Python"": 344319, ""Jupyter Notebook"": 262170, ""HTML"": 173356, ""CMake"": 62897, ""TeX"": 50725, ""CSS"": 27078, ""C"": 24621, ""Shell"": 17861, ""PowerShell"": 2315}",Other,20,6,"[differentialequations, sensitivities, matlab, simulation, adjoint-sensitivities, forward-sensitivities, sbml, systemsbiology, computational-biology, cvode, python, cpp, kinetic-modeling, mechanistic-models]",20,15,26,348,61,131,193,3425689895,28,119075660 10.5281/zenodo.579933,,1,dataset,,54,,,,,,,,20,143,54,20,143,149,7160474282,149,7160474282 10.5281/zenodo.580027,,1,software,,32,,,,,,,,31,141,32,31,141,145,42607264,145,42607264 10.5281/zenodo.580058,,1,software,,3,,,,,,,,2,16,3,2,16,16,919062501,16,919062501 10.5281/zenodo.580088,,1,software,https://github.com/ajaymur91/PoissonSolver,3,0,"{""C++"": 27339, ""C"": 939, ""Shell"": 672}",MIT License,0,1,[],0,3,75,3,3,75,81,652131,81,652131 10.5281/zenodo.58013,,1,software,https://github.com/mathLab/deal2lkit,0,15,"{""C++"": 906338, ""CMake"": 130378, ""Shell"": 20237, ""Makefile"": 620}",GNU Lesser General Public License v2.1,7,9,"[finite-element-analysis, c-plus-plus, doxygen, cmake, dealii]",7,0,4,0,0,4,4,0,4,0 10.5281/zenodo.580169,,1,dataset,,117,,,,,,,,89,287,117,89,287,302,19484057,302,19484057 10.5281/zenodo.580200,10.5281/zenodo.599845,1,dataset,,3,,,,,,,,2,30,3,2,30,33,9320929,33,9320929 10.5281/zenodo.58022,,1,software,https://github.com/carolinafishes/Collins_et_al_2016,1,0,{},,0,1,[],0,1,14,1,1,14,14,2846,14,2846 10.5281/zenodo.580247,10.5281/zenodo.594587,1,software,https://github.com/flav-io/flavio,9,19,"{""Python"": 1025564, ""Makefile"": 54358}",MIT License,29,8,"[flavour-physics, python, hep, physics, high-energy-physics, particle-physics, eft]",29,7,26,431,35,629,728,294614165,27,6683805 10.5281/zenodo.580254,,1,software,https://github.com/gsantoni/ccCluster,2,0,"{""Python"": 63087}",Other,5,2,[],5,2,17,2,2,17,20,30176,20,30176 10.5281/zenodo.580260,10.5281/zenodo.601432,1,dataset,,1,,,,,,,,1,13,1,1,13,13,88657752,13,88657752 10.5281/zenodo.58027,10.5281/zenodo.598202,1,software,https://github.com/STEllAR-GROUP/hpx,0,253,"{""C++"": 15507957, ""CMake"": 537195, ""Python"": 76251, ""Shell"": 20628, ""Cuda"": 14011, ""Assembly"": 8811, ""Batchfile"": 437, ""Dockerfile"": 319}",Boost Software License 1.0,1229,128,"[c-plus-plus, distributed, cross-platform, parallelism, concurrency, cpp]",1229,0,69,20,12,589,651,117890099,69,0 10.5281/zenodo.580300,,1,software,https://github.com/lorenzoromagnoli/fft_Arduino_wekinator,,0,"{""Processing"": 11204}",,2,1,[],2,,,,,,,,, 10.5281/zenodo.58031,10.5281/zenodo.593138,1,software,https://github.com/hammerlab/varcode,0,15,"{""Python"": 318401, ""Shell"": 342}",Apache License 2.0,47,12,[],47,0,5,0,0,23,23,0,5,0 10.5281/zenodo.580587,,1,dataset,,35,,,,,,,,31,194,35,31,194,195,16426745685,195,16426745685 10.5281/zenodo.58084,,1,publication,,3,,,,,,,,3,4,3,3,4,4,23916897,4,23916897 10.5281/zenodo.581187,10.5281/zenodo.598174,1,software,https://github.com/NeoGeographyToolkit/StereoPipeline,9,75,"{""C++"": 3705866, ""Python"": 1044469, ""M4"": 99052, ""CMake"": 53289, ""Makefile"": 48259, ""XSLT"": 41773, ""MATLAB"": 25700, ""Shell"": 17617, ""Perl"": 8080, ""Cuda"": 3235, ""C"": 850, ""GLSL"": 830}",Apache License 2.0,202,42,[],202,6,214,42,15,349,399,3219999154,222,688045365 10.5281/zenodo.581197,,1,software,https://github.com/jensv/relative_canonical_helicity,1,0,"{""Jupyter Notebook"": 46757309, ""Python"": 326084, ""Shell"": 4620, ""Makefile"": 4463}",MIT License,0,1,[],0,1,20,1,1,20,20,57609173,20,57609173 10.5281/zenodo.581250,10.5281/zenodo.593092,1,software,https://github.com/GNilsonne/SleepyBrain-Analyses,6,0,"{""MATLAB"": 4047047, ""R"": 577774, ""Objective-C"": 47473}",,2,3,[],2,6,54,16,13,108,123,2052568542,56,709924338 10.5281/zenodo.581360,,1,publication,,25,,,,,,,,17,67,25,17,67,70,1538186650,70,1538186650 10.5281/zenodo.581386,,1,software,https://github.com/DominikMueller64/Meiosis,1,0,"{""R"": 57876, ""C++"": 54716, ""C"": 2426}",,2,0,[],2,1,14,1,1,14,14,93243,14,93243 10.5281/zenodo.581389,,1,software,,4,,,,,,,,4,17,4,4,17,23,94068,23,94068 10.5281/zenodo.581496,10.5281/zenodo.598007,1,software,https://github.com/cglosser/QuEST,0,1,"{""C++"": 42209, ""CMake"": 10391, ""Python"": 5160}",GNU General Public License v2.0,2,3,"[quantum-mechanics, electromagnetics, simulation, quantum-dot, fast-fourier-transform, physics]",2,0,9,0,0,12,14,0,10,0 10.5281/zenodo.581591,10.5281/zenodo.596640,1,software,https://github.com/PascalKieslich/mousetrap,3,5,"{""R"": 348711, ""C++"": 66690}",GNU General Public License v3.0,15,6,"[mouse-tracking, r, analysis, visualization, clustering]",15,3,151,3,3,183,195,4578972,156,4578972 10.5281/zenodo.581694,,1,dataset,,517,,,,,,,,243,426,517,243,426,452,6311338778,452,6311338778 10.5281/zenodo.581704,10.5281/zenodo.596855,1,software,https://github.com/nipy/nipype,11,382,"{""Python"": 6620896, ""Tcl"": 44554, ""Shell"": 16134, ""HTML"": 9823, ""Makefile"": 2368, ""MATLAB"": 1718}",Other,439,57,"[python, workflow-engine, brain-imaging, big-data, dataflow, data-science, dataflow-programming, neuroimaging]",439,7,287,247,29,954,1164,1005719440,318,46736404 10.5281/zenodo.581803,,1,software,https://github.com/ancorasir/as_DeepClaw,0,5,{},,5,4,[],5,0,12,0,0,12,12,0,12,0 10.5281/zenodo.58183,,1,software,https://github.com/fdschneider/schneider_et_al_2016_animaldiversity,4,0,"{""C"": 62648, ""R"": 40116}",GNU General Public License v3.0,0,1,[],0,4,43,4,4,43,44,55324296,44,55324296 10.5281/zenodo.58223,,1,software,,70,,,,,,,,43,222,70,43,222,233,1305063734,233,1305063734 10.5281/zenodo.58228,,1,software,https://github.com/sallyrose0425/GWAS,17,4,"{""Python"": 14571, ""R"": 1304}",MIT License,3,4,[],3,15,109,17,15,109,118,126055,118,126055 10.5281/zenodo.582311,,1,software,,7,,,,,,,,5,63,7,5,63,64,51827,64,51827 10.5281/zenodo.582313,,1,software,https://github.com/QingjiaoLi/3DGenome_FruitFly,1,0,"{""Python"": 57850, ""Shell"": 5063}",,0,0,[],0,1,12,1,1,12,12,4119077,12,4119077 10.5281/zenodo.58257,,1,software,https://github.com/bahlolab/moimix,0,0,"{""R"": 67665}",,2,2,[],2,0,47,0,0,47,47,0,47,0 10.5281/zenodo.582572,,1,software,https://github.com/as-wanfang/as_HybridNN,0,0,"{""Python"": 31228}",MIT License,1,0,[],1,0,7,0,0,7,7,0,7,0 10.5281/zenodo.582652,,1,software,https://github.com/MountainHydroClimate/SCR_Model,2,0,"{""MATLAB"": 10835}",GNU General Public License v3.0,1,0,[],1,2,19,2,2,19,19,25096,19,25096 10.5281/zenodo.582679,,1,software,https://github.com/ChrisTrivedi/VSEARCH_workflow,5,1,"{""Shell"": 4971}",,1,1,[],1,5,36,5,5,36,37,14885,37,14885 10.5281/zenodo.58317,,1,software,https://github.com/pierreroudier/spemd,0,1,"{""R"": 17996}",,0,1,[],0,0,20,0,0,20,21,0,21,0 10.5281/zenodo.583172,,1,dataset,,0,,,,,,,,0,6,0,0,6,6,0,6,0 10.5281/zenodo.583310,10.5281/zenodo.597726,1,software,https://github.com/mosdef-hub/forcefield_perfluoroethers,12,2,"{""Jupyter Notebook"": 5325, ""Python"": 1584, ""Shell"": 645}",,2,2,[],2,12,51,12,12,55,57,186984,53,186984 10.5281/zenodo.583534,,1,software,https://github.com/dakkaynak/recruitTracker,0,1,"{""MATLAB"": 134469}",MIT License,0,0,[],0,0,12,0,0,12,12,0,12,0 10.5281/zenodo.583600,,1,dataset,,5,,,,,,,,5,38,5,5,38,38,1410643840,38,1410643840 10.5281/zenodo.583628,10.5281/zenodo.789482,1,dataset,,19,,,,,,,,11,30,25,16,53,58,3211685556,31,2345856204 10.5281/zenodo.583694,,1,dataset,,6,,,,,,,,4,14,6,4,14,16,521935878,16,521935878 10.5281/zenodo.583697,,1,dataset,,2,,,,,,,,2,8,2,2,8,8,6675682,8,6675682 10.5281/zenodo.583772,10.5281/zenodo.603093,1,dataset,,17,,,,,,,,7,34,17,7,34,36,104721650,36,104721650 10.5281/zenodo.583814,,1,publication,,1,,,,,,,,1,62,1,1,62,74,1454195,74,1454195 10.5281/zenodo.58411,10.5281/zenodo.595515,1,software,https://github.com/GLEON/rLakeAnalyzer,4,18,"{""R"": 138425}",,17,9,[],17,4,37,11,10,103,110,5589556,37,1955300 10.5281/zenodo.584133,,1,software,https://github.com/sukritranjan/ranjanwordsworthsasselov2017b,0,0,"{""Python"": 229400}",Other,1,1,[],1,0,7,0,0,7,8,0,8,0 10.5281/zenodo.584136,10.5281/zenodo.597063,1,software,https://github.com/cdcepi/zika,17,111,"{""HTML"": 1645522, ""R"": 48322}",Apache License 2.0,154,38,[],154,9,115,22,13,487,517,17337227845,123,15405782738 10.5281/zenodo.58441,10.5281/zenodo.591637,1,software,https://github.com/rdkit/rdkit,9,303,"{""C++"": 10433667, ""Python"": 3795995, ""CMake"": 746762, ""Java"": 320728, ""Jupyter Notebook"": 240615, ""C"": 228093, ""Yacc"": 58840, ""LLVM"": 38937, ""TSQL"": 35212, ""HTML"": 20217, ""JavaScript"": 13644, ""Makefile"": 10552, ""Shell"": 10236, ""Fortran"": 7661, ""C#"": 6745, ""Smarty"": 5864, ""Lex"": 4508, ""SMT"": 3010, ""Dockerfile"": 2034, ""QMake"": 389}",Other,624,84,"[cheminformatics, c-plus-plus, python, rdkit]",624,6,38,248,32,1061,1159,7589811397,38,246223197 10.5281/zenodo.58481,10.5281/zenodo.594886,1,software,https://github.com/dr-rodriguez/AstrodbWeb,0,2,"{""HTML"": 27134, ""Python"": 25968, ""CSS"": 17505}",MIT License,0,1,[],0,0,21,1,1,56,65,243686,23,0 10.5281/zenodo.58511,10.5281/zenodo.595564,1,software,https://github.com/Samreay/ChainConsumer,4,9,"{""Python"": 228930, ""TeX"": 1819, ""Shell"": 1752}",MIT License,27,7,[],27,2,1,130,6,47,55,102260526,1,2633020 10.5281/zenodo.58512,,1,publication,,26,,,,,,,,24,33,26,24,33,33,16673254,33,16673254 10.5281/zenodo.58517,,1,publication,,230,,,,,,,,207,645,230,207,645,675,191133680,675,191133680 10.5281/zenodo.58523,,1,publication,,56,,,,,,,,49,137,56,49,137,142,13197296,142,13197296 10.5281/zenodo.58579,,1,dataset,,22,,,,,,,,3,35,22,3,35,37,15385162240,37,15385162240 10.5281/zenodo.58613,10.5281/zenodo.595567,1,software,https://github.com/XENON1T/pax,0,16,"{""Python"": 862012, ""Shell"": 2567, ""Makefile"": 2353}","BSD 3-Clause ""New"" or ""Revised"" License",17,37,"[data-processing, python, reconstruction]",17,0,9,0,0,14,14,0,9,0 10.5281/zenodo.58638,,1,publication,,2,,,,,,,,2,9,2,2,9,10,953554,10,953554 10.5281/zenodo.58748,,1,dataset,,0,,,,,,,,0,21,0,0,21,21,0,21,0 10.5281/zenodo.58753,,1,software,https://github.com/jradavenport/pydis,1,19,"{""Python"": 158242, ""IDL"": 4081}",MIT License,27,12,"[astronomy, pipeline, spectroscopy]",27,1,55,1,1,55,55,438629,55,438629 10.5281/zenodo.58758,,1,poster,,34,,,,,,,,33,102,34,33,102,103,48600348,103,48600348 10.5281/zenodo.58759,10.5281/zenodo.598352,1,software,https://github.com/lmfit/lmfit-py,7,127,"{""Python"": 605388, ""Shell"": 1170, ""Batchfile"": 236}",Other,394,37,"[python, scipy, curve-fitting]",394,6,35,198,64,1672,2270,283784440,36,10207498 10.5281/zenodo.591274,10.5281/zenodo.591274,1,software,https://github.com/haililihai/ATPP_GUI,0,1,"{""C"": 1556629, ""Shell"": 1391220, ""MATLAB"": 719485, ""Assembly"": 362787, ""Makefile"": 185523, ""Visual Basic"": 144455, ""HTML"": 136604, ""Roff"": 106087, ""M4"": 39719, ""Awk"": 19690, ""NewLisp"": 16538, ""Perl"": 3586, ""Slash"": 1268, ""Tcl"": 1086, ""Java"": 1053}",GNU General Public License v3.0,1,1,[],1,0,0,0,0,15,18,0,0,0 10.5281/zenodo.591288,10.5281/zenodo.591288,1,software,https://github.com/haililihai/ATPP_CLI,0,2,"{""MATLAB"": 749265, ""Shell"": 29713, ""Java"": 1053, ""M"": 238}",GNU General Public License v3.0,0,1,[],0,0,4,0,0,25,30,0,4,0 10.5281/zenodo.591430,10.5281/zenodo.591430,1,dataset,https://github.com/sbillinge/ncomm-goldnp-2016,0,1,{},Creative Commons Zero v1.0 Universal,1,2,[],1,0,10,1,1,48,48,204956,10,0 10.5281/zenodo.591557,10.5281/zenodo.591557,1,software,https://github.com/moorepants/DynamicistToolKit,1,8,"{""Python"": 106216, ""Shell"": 2117, ""Batchfile"": 389}",The Unlicense,11,3,[],11,1,15,8,8,127,133,805649,15,104263 10.5281/zenodo.591651,10.5281/zenodo.591651,1,software,https://github.com/OpenQBMM/OpenQBMM,3,29,"{""C++"": 9123939, ""C"": 1274948, ""Shell"": 127912, ""Objective-C"": 3282}",GNU General Public License v3.0,40,27,"[computational-fluid-dynamics, moment-methods, quadrature-methods, multiphase-flow, population-balance, cfd, turbulent-mixing, gas-liquid-flow, gas-particle-flow]",40,2,101,12,5,224,440,635788216,103,449699877 10.5281/zenodo.59166,,1,software,https://github.com/thorstenwagner/ij-trackmate-findmaxima,1,2,"{""Java"": 46420}",MIT License,1,3,[],1,1,10,1,1,10,10,18185,10,18185 10.5281/zenodo.591855,10.5281/zenodo.591855,1,software,https://github.com/petebachant/UNH-RVAT-turbinesFoam,1,1,"{""C++"": 60848, ""Python"": 37087}",MIT License,1,1,[],1,1,15,6,5,39,45,251335,17,45859 10.5281/zenodo.59188,,1,software,https://github.com/XiaoTaoWang/calTADs,3,1,"{""Python"": 40280}",GNU General Public License v3.0,2,0,[],2,3,74,3,3,74,75,3119268,75,3119268 10.5281/zenodo.59203,,1,dataset,,6,,,,,,,,5,34,6,5,34,36,65270623,36,65270623 10.5281/zenodo.592209,10.5281/zenodo.592209,1,software,https://github.com/JuPedSim/JuPedSim,8,5,"{""CMake"": 982}",Other,26,15,[],26,7,59,21,9,130,140,483657141,62,21685280 10.5281/zenodo.592428,10.5281/zenodo.592428,1,software,https://github.com/SilviaMakowski/Shrinkage,2,0,"{""R"": 168472}",,1,3,[],1,2,52,2,2,57,59,2410984,52,2410984 10.5281/zenodo.59253,,1,software,https://github.com/thurnherr/rDGIdb,0,0,"{""R"": 19737}",Other,0,1,[],0,0,51,0,0,51,51,0,51,0 10.5281/zenodo.59255,,1,dataset,,22,,,,,,,,4,26,22,4,26,27,3950162286,27,3950162286 10.5281/zenodo.592687,10.5281/zenodo.592687,1,software,https://github.com/enanomapper/RRegrs,4,10,"{""R"": 256827}","BSD 2-Clause ""Simplified"" License",19,17,[],19,4,9,9,8,59,65,52160687,10,22468652 10.5281/zenodo.59270,,1,dataset,,2,,,,,,,,1,12,2,1,12,12,34804435,12,34804435 10.5281/zenodo.592828,10.5281/zenodo.592828,1,software,https://github.com/jooolia/RdRp_454_amplicons_Jericho_and_SOG,0,0,"{""R"": 32546, ""Shell"": 26288, ""Perl"": 14548, ""Python"": 11730}",,0,1,[],0,0,6,0,0,22,24,0,6,0 10.5281/zenodo.592893,10.5281/zenodo.592893,1,software,https://github.com/gap-packages/Semigroups,7,15,"{""GAP"": 4575262, ""C++"": 181065, ""M4"": 66955, ""Shell"": 8789, ""Objective-C"": 7106, ""Python"": 3978, ""C"": 2554, ""Makefile"": 2155}",Other,16,9,"[semigroups, monoids, enumeration, greens-relations, congruences, maximal-subsemigroups, finitely-presented-semigroups]",16,3,1,237,27,118,139,242381218,1,7919800 10.5281/zenodo.593563,10.5281/zenodo.593563,1,software,https://github.com/sagemath/sage,5,274,"{""Python"": 80208808, ""C++"": 339021, ""HTML"": 266116, ""Shell"": 220866, ""Gnuplot"": 211038, ""M4"": 128439, ""C"": 113683, ""Objective-C"": 67085, ""Makefile"": 45076, ""GAP"": 35706, ""MATLAB"": 29563, ""Dockerfile"": 15415, ""JavaScript"": 6045, ""TeX"": 4722, ""Batchfile"": 3276, ""Smarty"": 2090, ""PHP"": 1678, ""AppleScript"": 1388, ""Emacs Lisp"": 252, ""NewLisp"": 163, ""Assembly"": 113, ""Ruby"": 15}",Other,1006,120,"[math, sage, python, mathematics, algorithms]",1006,5,112,10,8,318,357,223779106,132,120968310 10.5281/zenodo.593623,10.5281/zenodo.593623,1,software,https://github.com/Lakens/perfect-t-test,1,18,"{""HTML"": 2884648, ""R"": 15929}",,51,11,[],51,1,11,3,2,23,26,4993662,12,1652004 10.5281/zenodo.593863,10.5281/zenodo.593863,1,software,https://github.com/DobyRahnev/Confidence-leak,4,0,"{""MATLAB"": 178977}",MIT License,0,1,[],0,4,43,5,5,61,67,32093533,47,25674128 10.5281/zenodo.593894,10.5281/zenodo.593894,1,software,https://github.com/samual-williams/spoor-analysis,0,0,"{""R"": 3130}",MIT License,0,1,[],0,0,2,2,2,15,16,5996,2,0 10.5281/zenodo.594159,10.5281/zenodo.594159,1,software,https://github.com/haddocking/pdb-tools,2,41,"{""Python"": 447149, ""TeX"": 980}",Apache License 2.0,30,7,"[python, protein, pdb, pdb-files, bioinformatics, structural-biology]",30,1,1,50,28,240,280,5576360,2,590150 10.5281/zenodo.594173,10.5281/zenodo.594173,1,software,https://github.com/greenelab/nf1_inactivation,0,3,"{""Python"": 57097, ""R"": 29386, ""Shell"": 4719}","BSD 3-Clause ""New"" or ""Revised"" License",9,4,[],9,0,7,2,2,36,38,82496,7,0 10.5281/zenodo.594435,10.5281/zenodo.594435,1,software,https://github.com/marcharper/python-ternary,3,61,"{""Python"": 59622}",MIT License,217,10,[],217,2,48,30,28,754,801,113692287,57,15997095 10.5281/zenodo.594510,10.5281/zenodo.594510,1,software,https://github.com/OpenKinect/libfreenect2,63,545,"{""C++"": 866367, ""C"": 125236, ""Cuda"": 78783, ""CMake"": 38449, ""GLSL"": 15027, ""Python"": 5618, ""Batchfile"": 4555, ""Shell"": 2435, ""Makefile"": 2098}",,1406,136,[],1406,62,1981,79,77,2532,2669,21651432,2095,17757306 10.5281/zenodo.594560,10.5281/zenodo.594560,1,software,https://github.com/slncky/slncky,5,7,"{""CSS"": 160607, ""Python"": 95181}",MIT License,7,5,[],7,4,36,5,4,71,75,155465,36,155465 10.5281/zenodo.594587,10.5281/zenodo.594587,1,software,https://github.com/flav-io/flavio,3,19,"{""Python"": 1025564, ""Makefile"": 54358}",MIT License,29,8,"[flavour-physics, python, hep, physics, high-energy-physics, particle-physics, eft]",29,2,4,431,35,629,728,294614165,4,2812953 10.5281/zenodo.59461,10.5281/zenodo.595175,1,software,https://github.com/spunt/bspmview,4,15,"{""MATLAB"": 857766, ""HTML"": 31274, ""Java"": 1053}",,30,5,[],30,2,21,30,25,414,454,1539476814,21,205262348 10.5281/zenodo.594854,10.5281/zenodo.594854,1,software,https://github.com/dib-lab/dib-MMETSP,9,3,"{""Python"": 34599}",,10,4,[],10,7,77,81,75,209,225,9546894,80,974565 10.5281/zenodo.59487,10.5281/zenodo.593723,1,software,https://github.com/DallasTrinkle/Onsager,0,1,"{""Python"": 647999, ""Perl"": 33646}",MIT License,4,4,[],4,0,5,6,5,92,100,6211493,5,0 10.5281/zenodo.594927,10.5281/zenodo.594927,1,software,https://github.com/rjchallis/assembly-stats,6,7,"{""JavaScript"": 54743, ""Perl"": 7454, ""CSS"": 7249, ""HTML"": 6659}",MIT License,32,3,[],32,6,197,7,7,230,242,4633500,207,3971820 10.5281/zenodo.59498,,1,software,https://github.com/basselqd/FCC0,0,0,"{""HTML"": 208174, ""Lua"": 135000}",,1,0,[],1,0,20,0,0,20,22,0,22,0 10.5281/zenodo.595175,10.5281/zenodo.595175,1,software,https://github.com/spunt/bspmview,26,15,"{""MATLAB"": 857766, ""HTML"": 31274, ""Java"": 1053}",,30,5,[],30,23,393,30,25,414,454,1539476814,431,1334214466 10.5281/zenodo.595200,10.5281/zenodo.595200,1,software,https://github.com/fbkarsdorp/story-network-data,7,0,{},,2,2,[],2,7,461,10,10,500,513,18005939,466,12604886 10.5281/zenodo.595246,10.5281/zenodo.595246,1,software,https://github.com/bobbypaton/GoodVibes,22,11,"{""Python"": 87106}",MIT License,20,10,"[compchem, thermochemistry, gaussian, vibrational-entropies, temperature, quasi-harmonic]",20,18,428,118,105,1201,1427,47456885,493,7946070 10.5281/zenodo.595630,10.5281/zenodo.595630,1,software,https://github.com/yufengdeng/Verasonics_ARFI,2,1,"{""MATLAB"": 60047}",Other,2,1,[],2,2,5,5,4,33,35,94106,5,37646 10.5281/zenodo.595710,10.5281/zenodo.595710,1,software,https://github.com/EricArcher/rfPermute,2,2,"{""TeX"": 52051, ""R"": 48555}",,10,7,[],10,2,72,3,3,86,90,16922942,76,16889512 10.5281/zenodo.595930,10.5281/zenodo.595930,1,software,https://github.com/beOn/cili,0,8,"{""AGS Script"": 8136852, ""Python"": 60126}",Other,12,5,[],12,0,49,0,0,49,50,0,50,0 10.5281/zenodo.596118,10.5281/zenodo.596118,1,software,https://github.com/eyurtsev/FlowCytometryTools,2,22,"{""Jupyter Notebook"": 330726, ""Python"": 207748, ""HTML"": 7195}",MIT License,56,11,[],56,2,39,8,8,147,155,100683816,39,25170954 10.5281/zenodo.59624,,1,software,https://github.com/RainerEngelken/reanalysis,3,1,"{""Julia"": 35958, ""Python"": 6735, ""Fortran"": 2652}",GNU General Public License v3.0,0,1,[],0,3,57,3,3,57,77,211389,77,211389 10.5281/zenodo.59640,,1,software,https://github.com/newilson/ExerciseCEST,0,0,"{""C"": 144683, ""MATLAB"": 134825, ""HTML"": 8124}",,0,1,[],0,0,11,0,0,11,11,0,11,0 10.5281/zenodo.596465,10.5281/zenodo.596465,1,software,https://github.com/gap-packages/Digraphs,2,21,"{""GAP"": 949720, ""C"": 209419, ""M4"": 49280, ""Shell"": 9152, ""Makefile"": 3952, ""Python"": 2256, ""Objective-C"": 965}",Other,10,9,"[digraph, gap, graphs, graph-algorithms, graph-isomorphism, graph-coloring, cliques, graph-homomorphism]",10,1,0,76,13,30,34,51561584,0,2015296 10.5281/zenodo.596649,10.5281/zenodo.596649,1,software,https://github.com/PascalKieslich/readbulk,2,1,"{""R"": 11452}",GNU General Public License v3.0,4,3,"[r, read, files, merge, combine]",4,2,61,2,2,62,65,110822,64,110822 10.5281/zenodo.596663,10.5281/zenodo.596663,1,software,https://github.com/gringer/bioinfscripts,1,8,"{""Perl"": 345763, ""R"": 167798, ""Python"": 85094, ""HTML"": 82159, ""Java"": 20606, ""JavaScript"": 16917, ""OpenSCAD"": 11756, ""TeX"": 8801, ""Shell"": 6605, ""CSS"": 3302}",GNU General Public License v3.0,38,6,[],38,1,4,6,5,65,67,2045529,4,547539 10.5281/zenodo.596767,10.5281/zenodo.596767,1,software,https://github.com/eldarrak/Godwits_worms_and_climate_change,8,0,"{""HTML"": 1742099}",,0,1,[],0,6,18,30,11,51,55,263429227,19,74780416 10.5281/zenodo.597221,10.5281/zenodo.597221,1,software,https://github.com/lwtnn/lwtnn,0,29,"{""C++"": 113782, ""Python"": 69483, ""Shell"": 35950, ""CMake"": 12713, ""Makefile"": 3074}",MIT License,68,7,[],68,0,2,99,15,390,446,8345701,3,0 10.5281/zenodo.597266,10.5281/zenodo.597266,1,software,https://github.com/ercrema/Jomon_SPD_Comparison,0,0,"{""R"": 36974}",,1,1,[],1,0,11,0,0,68,81,0,13,0 10.5281/zenodo.597331,10.5281/zenodo.597331,1,software,https://github.com/UCSDPulmonaryImaging/Deforminator,1,3,"{""MATLAB"": 99474, ""Shell"": 1700}",GNU General Public License v3.0,1,5,[],1,1,13,9,9,104,117,96019077,18,10670357 10.5281/zenodo.59783,,1,software,https://github.com/giacomov/gtburst,3,3,"{""Python"": 1040134, ""Tcl"": 107600, ""C++"": 328}",,0,2,[],0,2,12,3,2,12,12,10745637,12,10745637 10.5281/zenodo.59792,,1,publication,,31,,,,,,,,29,59,31,29,59,61,29129770,61,29129770 10.5281/zenodo.59797,,1,publication,,5,,,,,,,,5,7,5,5,7,7,7849305,7,7849305 10.5281/zenodo.59817,,1,image,,0,,,,,,,,0,24,0,0,24,25,0,25,0 10.5281/zenodo.59824,,1,image,,1,,,,,,,,1,29,1,1,29,30,372573387,30,372573387 10.5281/zenodo.59892,10.5281/zenodo.596047,1,software,https://github.com/greenelab/continuous_analysis_brainarray,1,0,"{""R"": 638}","BSD 3-Clause ""New"" or ""Revised"" License",0,3,[],0,1,24,1,1,24,24,209363,24,209363 10.5281/zenodo.59897,,1,software,https://github.com/davismcc/scater_tutorials_open_data,14,2,"{""HTML"": 58706273}",GNU General Public License v3.0,1,1,[],1,8,78,14,8,78,81,287412482,81,287412482 10.5281/zenodo.59930,10.5281/zenodo.594281,1,software,https://github.com/salotz/mast,0,0,"{""Python"": 365409, ""Tcl"": 828}",MIT License,8,2,"[computational-biology, computational-chemistry, protein-structure, protein-ligand-interactions]",8,0,20,2,2,81,81,14769462,20,0 10.5281/zenodo.59955,10.5281/zenodo.594587,1,software,https://github.com/flav-io/flavio,9,19,"{""Python"": 1025564, ""Makefile"": 54358}",MIT License,29,8,"[flavour-physics, python, hep, physics, high-energy-physics, particle-physics, eft]",29,7,16,431,35,629,728,294614165,16,5509800 10.5281/zenodo.59964,10.5281/zenodo.594323,1,software,https://github.com/UT-CHG/BET,0,17,"{""Python"": 728244}",Other,6,2,[],6,0,45,0,0,61,69,0,46,0 10.5281/zenodo.59976,,1,software,,5,,,,,,,,5,33,5,5,33,33,71542330,33,71542330 10.5281/zenodo.59998,10.5281/zenodo.594199,1,software,https://github.com/nansencenter/nansat,3,46,"{""Python"": 830489, ""C"": 63403, ""Perl"": 6589, ""Dockerfile"": 876, ""Makefile"": 793, ""Shell"": 516}",GNU General Public License v3.0,126,30,[],126,3,45,4,4,78,81,4509084,46,3385023 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imagej-plugins, fiji, fiji-plugin]",2,0,6,1,1,14,14,6367735,6,0 10.5281/zenodo.60917,,1,lesson,,29,,,,,,,,27,23,29,27,23,23,17173133,23,17173133 10.5281/zenodo.60937,,1,dataset,,6,,,,,,,,5,24,6,5,24,25,172007863,25,172007863 10.5281/zenodo.60938,,1,publication,,33,,,,,,,,32,192,33,32,192,194,64897272,194,64897272 10.5281/zenodo.61119,,1,software,,10,,,,,,,,9,149,10,9,149,166,406640,166,406640 10.5281/zenodo.61127,10.5281/zenodo.640645,1,publication,,23,,,,,,,,21,44,520,396,580,679,5625521017,45,168798265 10.5281/zenodo.61133,,1,dataset,,16,,,,,,,,13,252,16,13,252,255,580932245,255,580932245 10.5281/zenodo.61134,10.5281/zenodo.595731,1,software,https://github.com/calacademy-research/excerptByIDs,0,0,"{""Go"": 8563}",MIT License,0,1,[],0,0,5,0,0,10,10,0,5,0 10.5281/zenodo.61136,,1,software,https://github.com/calacademy-research/BLATq,5,0,"{""C"": 4014298, ""Makefile"": 26725, ""HTML"": 9725, ""C++"": 7418, ""AngelScript"": 5243, ""Objective-C"": 3827, ""Pep8"": 1734, ""PostScript"": 1518, ""Shell"": 432}",MIT License,1,2,[],1,5,29,5,5,29,30,9694470,30,9694470 10.5281/zenodo.61151,,1,software,,1,,,,,,,,1,24,1,1,24,24,2737021,24,2737021 10.5281/zenodo.61180,10.5281/zenodo.592762,1,software,https://github.com/SHTOOLS/SHTOOLS,7,44,"{""Fortran"": 1282159, ""Python"": 746299, ""Makefile"": 22659}","BSD 3-Clause ""New"" or ""Revised"" License",91,13,"[spherical-harmonics, spectral-analysis, python, fortran, gravity-field, magnetic-field, topography, slepian-functions]",91,6,34,104,56,644,733,1709696957,34,95615121 10.5281/zenodo.61196,10.5281/zenodo.593749,1,software,https://github.com/sjbeckett/DilutionMethod-NicheCompetition,0,2,"{""PostScript"": 45361, ""R"": 26837}",MIT License,0,1,[],0,0,6,0,0,18,19,0,6,0 10.5281/zenodo.61234,,1,dataset,,120,,,,,,,,114,542,120,114,542,562,98100840,562,98100840 10.5281/zenodo.61256,,1,dataset,,0,,,,,,,,0,23,0,0,23,23,0,23,0 10.5281/zenodo.61265,,1,software,,0,,,,,,,,0,11,0,0,11,11,0,11,0 10.5281/zenodo.61341,10.5281/zenodo.595745,1,software,https://github.com/nco/nco,4,23,"{""C"": 4812534, ""C++"": 1513355, ""Shell"": 870468, ""Perl"": 462082, ""Makefile"": 385861, ""TeX"": 324723, ""GAP"": 127444, ""CMake"": 41009, ""Batchfile"": 15018, ""Python"": 6734, ""NCL"": 6052, ""Cuda"": 4027, ""M4"": 1422}",Other,65,10,"[nco, netcdf, dap, climate, netcdf-operators, hdf5, hdf, regrid, gsl, cmip5, esgf, opendap, cesm, e3sm]",65,3,28,155,16,104,116,781301523,29,19439100 10.5281/zenodo.61373,,1,dataset,,2,,,,,,,,2,11,2,2,11,12,19626,12,19626 10.5281/zenodo.61378,,1,publication,,53,,,,,,,,51,196,53,51,196,200,114886934,200,114886934 10.5281/zenodo.61392,,1,software,https://github.com/aboucaud/pypher,1,8,"{""Python"": 31208}",Other,17,2,[],17,1,35,1,1,35,39,548133,39,548133 10.5281/zenodo.61462,10.5281/zenodo.595747,1,software,https://github.com/mrkrd/cochlea,2,18,"{""Python"": 296950, ""C"": 93877, ""C++"": 12790, ""M"": 5470, ""MATLAB"": 2277, ""Batchfile"": 155, ""Makefile"": 42}",GNU General Public License v3.0,56,14,"[python, cochlea, inner-ear, model, auditory, computational-neuroscience, neuroscience, sound, basilar-membrane, inner-hair-cell]",56,2,55,2,2,57,57,1020276,55,1020276 10.5281/zenodo.61570,10.5281/zenodo.596017,1,software,https://github.com/cvitolo/hddtools,3,10,"{""R"": 62743, ""TeX"": 2770}",,26,11,"[r, rstats, r-package, hydrology, sepa, precipitation, mopex, data60uk, grdc, kgclimateclass, peer-reviewed]",26,1,12,17,5,34,36,74332340,12,1834446 10.5281/zenodo.61571,10.5281/zenodo.597438,1,software,https://github.com/dhimmel/hetio,3,14,"{""Python"": 123902, ""Jupyter Notebook"": 26621}",Creative Commons Zero v1.0 Universal,35,7,"[rephetio, hetnet, python, graph, heterogeneous-network, edge-prediction]",35,2,30,27,5,71,79,4566170,30,78330 10.5281/zenodo.61584,10.5281/zenodo.594758,1,software,https://github.com/philrosenfield/padova_tracks,3,1,"{""Python"": 170958}",MIT License,4,3,[],4,3,8,7,5,26,31,556513,8,196077 10.5281/zenodo.61618,,1,software,https://github.com/frankkramer-lab/rBiopaxParser,4,2,"{""R"": 210742}",,8,2,[],8,4,35,4,4,35,35,1535612,35,1535612 10.5281/zenodo.61639,10.5281/zenodo.593208,1,software,https://github.com/cvitolo/fuse,0,1,"{""C++"": 22264704, ""R"": 92760, ""C"": 53904, ""TeX"": 3860, ""Perl"": 1297}",,8,1,[],8,0,9,0,0,29,32,0,9,0 10.5281/zenodo.61756,,1,software,https://github.com/salzahrani/Matlab-Source-Code-An-Implementation-of-the-Expectation-Maximization-Algorithm,81,0,"{""MATLAB"": 20881}",,0,1,[],0,80,475,81,80,475,483,34828785,483,34828785 10.5281/zenodo.61775,,1,publication,,8,,,,,,,,8,15,8,8,15,17,4909696,17,4909696 10.5281/zenodo.61787,10.5281/zenodo.595202,1,software,https://github.com/fusion-jena/unit-ontology-review-results,0,0,"{""HTML"": 11208318}",,0,3,[],0,0,21,0,0,55,66,0,21,0 10.5281/zenodo.61789,10.5281/zenodo.595204,1,software,https://github.com/fusion-jena/unit-ontology-review,1,1,"{""JavaScript"": 344998, ""HTML"": 5722}",MIT License,3,2,[],3,1,25,6,6,92,119,1261348,26,178134 10.5281/zenodo.61799,10.5281/zenodo.595528,1,software,https://github.com/DRL/blobtools,1,21,"{""Python"": 163059, ""Dockerfile"": 594}",GNU General Public License v3.0,71,8,"[genome-assembly, visualisation, blobtools, quality-control, contamination]",71,1,43,8,7,356,394,77180037,43,9731661 10.5281/zenodo.61819,,1,dataset,,2,,,,,,,,2,7,2,2,7,7,1380932438,7,1380932438 10.5281/zenodo.61841,10.5281/zenodo.794558,1,dataset,,17,,,,,,,,3,39,17,3,39,40,954113926,40,954113926 10.5281/zenodo.61919,,1,dataset,,0,,,,,,,,0,3,0,0,3,3,0,3,0 10.5281/zenodo.61920,,1,dataset,,0,,,,,,,,0,3,0,0,3,3,0,3,0 10.5281/zenodo.61937,10.5281/zenodo.595730,1,software,https://github.com/LuminosoInsight/wordfreq,2,25,"{""Python"": 75734}",MIT License,269,46,[],269,2,29,10,5,88,100,327801422,29,71200374 10.5281/zenodo.61980,,1,dataset,,27,,,,,,,,21,59,27,21,59,71,1439297127,71,1439297127 10.5281/zenodo.61982,,1,dataset,,13,,,,,,,,13,81,13,13,81,90,13999589266,90,13999589266 10.5281/zenodo.62024,10.5281/zenodo.592119,1,software,https://github.com/biocaddie/WG3-MetadataSpecifications,6,11,"{""Python"": 6643}",,21,35,"[data-discovery, dats-model, data-modeling, json-schemas, json-ld, schema-org]",21,5,138,44,38,896,1010,238354936,141,35214294 10.5281/zenodo.629242,10.5281/zenodo.629242,1,dataset,,4,,,,,,,,3,106,4,3,106,133,1380352,133,1380352 10.5281/zenodo.654348,10.5281/zenodo.654348,1,software,,3,,,,,,,,2,65,3,2,65,70,92303490,70,92303490 10.5281/zenodo.7068,,1,software,,41,,,,,,,,32,303,41,32,303,317,824710548,317,824710548 10.5281/zenodo.7093,,1,dataset,,16,,,,,,,,16,31,16,16,31,31,9979744,31,9979744 10.5281/zenodo.7095,,1,publication,,4,,,,,,,,4,31,4,4,31,31,19263148,31,19263148 10.5281/zenodo.7097,,1,publication,,1,,,,,,,,1,46,1,1,46,46,7151,46,7151 10.5281/zenodo.7099,,1,publication,,5,,,,,,,,3,24,5,3,24,26,20802,26,20802 10.5281/zenodo.7126,,1,software,,15,,,,,,,,15,97,15,15,97,100,397950,100,397950 10.5281/zenodo.7134,,1,software,,2,,,,,,,,2,41,2,2,41,41,1859020,41,1859020 10.5281/zenodo.7144,,1,software,,5,,,,,,,,5,67,5,5,67,68,3035360,68,3035360 10.5281/zenodo.7148,,1,software,,72,,,,,,,,68,1529,72,68,1529,1579,491616,1579,491616 10.5281/zenodo.718561,10.5281/zenodo.718561,1,dataset,,2,,,,,,,,2,22,2,2,22,22,7927556,22,7927556 10.5281/zenodo.740440,10.5281/zenodo.740440,1,dataset,,5332,,,,,,,,148,514,5508,172,2873,3015,226274180042,606,218071556118 10.5281/zenodo.7478,,1,software,,1,,,,,,,,1,16,1,1,16,16,2038417,16,2038417 10.5281/zenodo.7534,,1,software,,0,,,,,,,,0,67,0,0,67,67,0,67,0 10.5281/zenodo.7544,,1,dataset,,9,,,,,,,,8,31,9,8,31,31,119115,31,119115 10.5281/zenodo.7582,,1,dataset,,0,,,,,,,,0,46,0,0,46,46,0,46,0 10.5281/zenodo.7588,,1,software,,31,,,,,,,,29,390,31,29,390,399,8901092,399,8901092 10.5281/zenodo.7635,,1,software,,8,,,,,,,,8,52,8,8,52,52,98225928,52,98225928 10.5281/zenodo.7639,,1,software,,0,,,,,,,,0,337,0,0,337,379,0,379,0 10.5281/zenodo.7663,,1,software,,26,,,,,,,,25,373,26,25,373,390,39306618,390,39306618 10.5281/zenodo.7708,,1,software,,29,,,,,,,,28,282,29,28,282,283,506079,283,506079 10.5281/zenodo.7709,,1,software,,15,,,,,,,,15,182,15,15,182,182,121440,182,121440 10.5281/zenodo.7719,,1,software,,4,,,,,,,,4,281,4,4,281,289,101712,289,101712 10.5281/zenodo.7750,,1,dataset,,5,,,,,,,,5,48,5,5,48,50,52479840,50,52479840 10.5281/zenodo.775129,10.5281/zenodo.775129,1,dataset,,38,,,,,,,,34,118,38,34,118,125,2739030424,125,2739030424 10.5281/zenodo.7753,,1,software,,15,,,,,,,,6,205,15,6,205,205,554635,205,554635 10.5281/zenodo.781433,10.5281/zenodo.781433,1,software,,10,,,,,,,,10,128,12,11,131,132,19921250,129,8504671 10.5281/zenodo.800496,10.5281/zenodo.800495,1,software,https://github.com/InverseTampere/qsm-fanni-matlab,0,2,"{""MATLAB"": 125007}",GNU General Public License v3.0,6,3,[matlab],6,0,8,1,1,19,22,184754,8,0 10.5281/zenodo.800548,10.5281/zenodo.800547,1,dataset,,9,,,,,,,,9,43,9,9,43,44,1318736979,44,1318736979 10.5281/zenodo.800645,10.5281/zenodo.704730,1,dataset,,43,,,,,,,,27,1826,101,70,1941,2153,465198920220,2016,41712857356 10.5281/zenodo.800648,10.5281/zenodo.705645,1,software,,7,,,,,,,,7,167,10,9,205,294,18101116,209,13080571 10.5281/zenodo.800729,10.5281/zenodo.800728,1,software,,4,,,,,,,,1,22,4,1,22,22,334674951,22,334674951 10.5281/zenodo.800758,10.5281/zenodo.800757,1,software,https://github.com/ReproNim/simple_workflow,3,40,"{""Python"": 12129, ""Shell"": 6149, ""Dockerfile"": 2366}",Other,7,4,"[docker-image, docker, neuroimaging, neurodebian, reproducible-science, reproducibility]",7,3,56,3,3,56,63,6452934,63,6452934 10.5281/zenodo.801336,10.5281/zenodo.801335,1,software,https://github.com/chrishales/polcalerrsims,0,0,"{""Python"": 49381}","BSD 3-Clause ""New"" or ""Revised"" License",0,1,[],0,0,9,0,0,9,10,0,10,0 10.5281/zenodo.801378,10.5281/zenodo.596883,1,software,https://github.com/jamie-alnasir/hercules,0,0,"{""Python"": 70679, ""Shell"": 10693, ""HTML"": 10512}",,1,1,[],1,0,28,0,0,34,35,0,28,0 10.5281/zenodo.801459,10.5281/zenodo.801458,1,software,https://github.com/SuperDARN/rst,4,6,"{""C"": 4390792, ""IDL"": 805708, ""Makefile"": 192664, ""Shell"": 72431, ""C++"": 64548, ""Prolog"": 56962, ""Objective-C"": 19470, ""Scheme"": 5669, ""Scilab"": 5661, ""SAS"": 5626, ""CSS"": 2974, ""JavaScript"": 1270}",,9,14,"[superdarn, c, idl]",9,2,29,26,13,150,205,290998376,35,41325380 10.5281/zenodo.801482,10.5281/zenodo.801481,1,software,https://github.com/StevisonLab/genotypeR,0,1,"{""R"": 83543, ""Perl"": 31512, ""Shell"": 6255}",,0,4,[],0,0,13,0,0,23,25,0,13,0 10.5281/zenodo.801484,10.5281/zenodo.801483,1,dataset,,3,,,,,,,,2,21,3,2,21,23,919488523,23,919488523 10.5281/zenodo.801502,10.5281/zenodo.801501,1,publication,,39,,,,,,,,38,64,39,38,64,64,3952338,64,3952338 10.5281/zenodo.801511,10.5281/zenodo.801510,1,dataset,,15,,,,,,,,4,40,70,25,126,162,106166926587,51,70930 10.5281/zenodo.801642,10.5281/zenodo.801641,1,dataset,,4,,,,,,,,3,36,177,50,122,140,186167993303,37,10901543602 10.5281/zenodo.801749,10.5281/zenodo.592406,1,software,https://github.com/Axelrod-Python/Axelrod,13,138,"{""Python"": 1326560, ""Shell"": 82}",Other,404,24,"[python, game-theory, reproducible-research, mathematics, computer-science]",404,11,70,375,19,386,468,237284079,73,9314006 10.5281/zenodo.801765,10.5281/zenodo.801765,1,dataset,,6,,,,,,,,5,25,6,5,50,56,1417035881,29,1417035881 10.5281/zenodo.801778,10.5281/zenodo.596791,1,software,https://github.com/kasra-hosseini/obspyDMT,5,29,"{""QML"": 173083454, ""Python"": 322479}",GNU General Public License v3.0,30,6,[],30,5,60,5,5,75,77,169588070,61,169588070 10.5281/zenodo.801851,10.5281/zenodo.801851,1,software,https://github.com/corticalsim/corticalsim,13,0,"{""C++"": 287476, ""Makefile"": 6909, ""Objective-C"": 316}",Mozilla Public License 2.0,1,1,[],1,13,31,13,13,31,43,2834156,43,2834156 10.5281/zenodo.802275,10.5281/zenodo.597531,1,software,https://github.com/FInAT/FInAT,7,5,"{""Python"": 86072, ""Makefile"": 64}",MIT License,1,11,[],1,4,20,78,17,72,79,53176977,21,4689006 10.5281/zenodo.802279,10.5281/zenodo.802278,1,software,https://github.com/wence-/ssc,2,1,"{""C"": 75733, ""Python"": 44828, ""Makefile"": 948}",MIT License,0,3,[],0,1,10,9,5,21,26,273150,10,38090 10.5281/zenodo.802285,10.5281/zenodo.802284,1,publication,https://github.com/ReScience-Archives/Rougier-2017,11,1,"{""Python"": 23455, ""TeX"": 14071, ""Makefile"": 1491}",,10,6,[],10,11,108,11,11,108,118,660340219,118,660340219 10.5281/zenodo.802875,10.5281/zenodo.802874,1,software,https://github.com/rystanley/CartDist,1,1,"{""R"": 9708}",,0,2,[],0,1,20,1,1,20,22,562806,22,562806 10.5281/zenodo.802907,10.5281/zenodo.802906,1,dataset,,0,,,,,,,,0,8,4,3,55,65,21762292168,8,0 10.5281/zenodo.802917,10.5281/zenodo.802916,1,software,https://github.com/manalirupji/CASAS,0,0,"{""R"": 186424}",,2,1,[],2,0,22,18,14,144,149,15013742,22,0 10.5281/zenodo.802939,10.5281/zenodo.802939,1,software,,9,,,,,,,,9,58,10,10,68,79,726132,64,719154 10.5281/zenodo.802990,10.5281/zenodo.802989,1,dataset,,87,,,,,,,,64,123,87,64,123,138,24830322,138,24830322 10.5281/zenodo.802992,10.5281/zenodo.802991,1,software,https://github.com/tnaerland/two_defect_DPCM_assessment,1,0,"{""Python"": 60232}",Other,0,0,[],0,1,16,1,1,16,17,44634700,17,44634700 10.5281/zenodo.803493,10.5281/zenodo.599899,1,software,,0,,,,,,,,0,35,0,0,35,35,0,35,0 10.5281/zenodo.803854,10.5281/zenodo.803853,1,publication,,7,,,,,,,,6,25,7,6,25,26,3588669,26,3588669 10.5281/zenodo.803989,10.5281/zenodo.803989,1,software,,2,,,,,,,,2,7,2,2,7,7,10558,7,10558 10.5281/zenodo.803992,10.5281/zenodo.803991,1,software,https://github.com/jrcunning/STJ2012,10,0,"{""HTML"": 7426341, ""R"": 44229, ""Shell"": 12818, ""Makefile"": 2721}",,0,1,[],0,9,83,10,9,83,89,451811460,89,451811460 10.5281/zenodo.804038,10.5281/zenodo.804037,1,dataset,,2,,,,,,,,2,9,2,2,9,9,2858,9,2858 10.5281/zenodo.804042,10.5281/zenodo.804041,1,publication,,2,,,,,,,,2,17,2,2,17,17,5919730,17,5919730 10.5281/zenodo.804046,10.5281/zenodo.593514,1,software,https://github.com/milaboratory/mixcr,8,38,"{""Java"": 1481541, ""Shell"": 46410, ""JavaScript"": 2909}",Other,85,24,"[bioinformatics, immunology, antibody, t-cell-receptor, t-cell, rep-seq]",85,6,8,161,21,47,53,170856564,8,8163256 10.5281/zenodo.804090,10.5281/zenodo.804089,1,software,https://github.com/izhbannikov/cophesim_data,16,0,"{""R"": 5648}",,0,1,[],0,7,32,16,7,32,34,446040880,34,446040880 10.5281/zenodo.804264,10.5281/zenodo.757399,1,dataset,,9,,,,,,,,3,15,9,3,18,23,223637241,20,223637241 10.5281/zenodo.804326,10.5281/zenodo.804325,1,software,https://github.com/repseqio/repseqio,5,1,"{""Java"": 509369, ""Shell"": 3384}",Apache License 2.0,6,4,[],6,4,109,19,6,125,138,4157830,117,1061550 10.5281/zenodo.804427,10.5281/zenodo.804426,1,software,,4,,,,,,,,3,43,4,3,47,49,9893337088,43,9893337088 10.5281/zenodo.804488,10.5281/zenodo.596750,1,software,https://github.com/pasanfernando/VTO_to_opentree_pipeline,1,1,"{""Python"": 51247}",MIT License,0,1,[],0,1,24,1,1,34,37,2805348,26,2805348 10.5281/zenodo.804687,10.5281/zenodo.804686,1,software,,0,,,,,,,,0,11,0,0,11,11,0,11,0 10.5281/zenodo.804837,10.5281/zenodo.804836,1,dataset,,312,,,,,,,,5,28,312,5,28,29,14676900055,29,14676900055 10.5281/zenodo.804848,10.5281/zenodo.804847,1,publication,,11,,,,,,,,11,11,11,11,11,11,7566801,11,7566801 10.5281/zenodo.805012,10.5281/zenodo.805011,1,software,https://github.com/calacademy-research/NSO-genome-scripts,0,0,"{""Perl"": 16495, ""Shell"": 2807, ""Python"": 1009}",MIT License,0,3,[],0,0,1,0,0,1,1,0,1,0 10.5281/zenodo.805415,10.5281/zenodo.805414,1,software,https://github.com/shaunharker/2017-DSGRN-ModelRejection,0,0,"{""Jupyter Notebook"": 399700}",MIT License,0,1,[],0,0,1,0,0,1,1,0,1,0 10.5281/zenodo.806015,10.5281/zenodo.806014,1,software,https://github.com/ashleefv/glucoseRASpodocytes,0,1,"{""MATLAB"": 43830}","BSD 3-Clause ""New"" or ""Revised"" License",0,2,[],0,0,17,0,0,17,17,0,17,0 10.5281/zenodo.807733,10.5281/zenodo.807733,1,software,https://github.com/jdbcode/LandsatLinkr,20,12,"{""R"": 191283}",,29,10,[],29,17,169,21,18,308,357,46359418,191,44159500 10.5281/zenodo.808832,10.5281/zenodo.808831,1,software,https://github.com/knights-lab/shi7,0,3,"{""Python"": 139460, ""C"": 25036, ""Shell"": 312, ""Makefile"": 310}",GNU Affero General Public License v3.0,13,8,[],13,0,20,4,2,63,75,16719324,26,0 10.5281/zenodo.808870,10.5281/zenodo.808869,1,dataset,,34,,,,,,,,26,136,34,26,136,146,30515653176,146,30515653176 10.5281/zenodo.808909,10.5281/zenodo.808908,1,software,https://github.com/haboateng/Cartesian-treecodes-for-multipolar-interaction,0,0,"{""Fortran"": 494797, ""Assembly"": 1203}",GNU General Public License v3.0,1,2,[],1,0,12,0,0,23,26,0,13,0 10.5281/zenodo.808913,10.5281/zenodo.808912,1,software,https://github.com/aquaskyline/LRSIM,0,11,"{""C"": 1104058, ""Perl"": 615129, ""C++"": 259234, ""Roff"": 28252, ""Python"": 26961, ""Lua"": 23713, ""Makefile"": 18211, ""Perl 6"": 6965, ""Java"": 6716, ""TeX"": 4217, ""Shell"": 2601, ""R"": 1329}",MIT License,35,7,"[supernova, read-simulation, human-genomes, bioinformatics, computational-biology, longranger]",35,0,29,0,0,29,29,0,29,0 10.5281/zenodo.808941,10.5281/zenodo.808940,1,software,https://github.com/sdyy1990/metaOthello,97,0,"{""C++"": 799419, ""Makefile"": 8869, ""C"": 3819, ""Shell"": 982}",Other,0,1,[],0,97,2864,97,97,2864,2916,47029092,2916,47029092 10.5281/zenodo.809182,10.5281/zenodo.809181,1,software,https://github.com/SESman/rbl,0,2,"{""R"": 176236}",Other,2,3,[],2,0,12,0,0,12,13,0,13,0 10.5281/zenodo.809383,10.5281/zenodo.809382,1,software,https://github.com/SamLCox/scoutDSA296_postDataProcessing,0,0,{},MIT License,0,0,[],0,0,5,0,0,5,5,0,5,0 10.5281/zenodo.809385,10.5281/zenodo.809384,1,software,https://github.com/SamLCox/Accelerometer_R_SouthernElephantSeals,0,0,{},MIT License,0,0,[],0,0,10,0,0,10,10,0,10,0 10.5281/zenodo.809387,10.5281/zenodo.809386,1,software,https://github.com/SamLCox/assignBottomPhase_segmentedDataBSM,0,0,{},MIT License,0,0,[],0,0,9,0,0,9,9,0,9,0 10.5281/zenodo.809472,10.5281/zenodo.809471,1,presentation,,8,,,,,,,,8,19,8,8,19,19,12243744,19,12243744 10.5281/zenodo.810176,10.5281/zenodo.810176,1,software,https://github.com/jw156605/MATCHER,0,2,"{""Jupyter Notebook"": 158693, ""Python"": 32562}",MIT License,11,2,[],11,0,39,0,0,39,39,0,39,0 10.5281/zenodo.810195,10.5281/zenodo.810195,1,software,https://github.com/izhbannikov/cophesim,1,0,"{""Python"": 38113, ""Shell"": 489}",,0,1,[],0,1,18,1,1,26,28,105015,18,105015 10.5281/zenodo.814246,10.5281/zenodo.598374,1,software,https://github.com/Verites/verigraph,0,3,"{""Haskell"": 757607, ""Lua"": 43580, ""Gosu"": 7721, ""Python"": 5016, ""Shell"": 1985, ""Ruby"": 38}",Apache License 2.0,26,6,"[haskell, verification, graph-grammars, graph-transformation-systems, category-theory, graph, verigraph]",26,0,17,1,1,26,27,484333,17,0 10.5281/zenodo.814807,10.5281/zenodo.798175,1,publication,,15,,,,,,,,7,38,15,7,38,43,3547689744,43,3547689744 10.5281/zenodo.815403,10.5281/zenodo.596250,1,software,https://github.com/rnabioco/valr,3,14,"{""R"": 216631, ""C++"": 86185, ""C"": 2098}",Other,40,5,"[genome, interval-arithmetic, bedtools]",40,2,25,28,7,121,131,47236609,25,4146264 10.5281/zenodo.815583,10.5281/zenodo.815582,1,software,,4,,,,,,,,4,17,17,11,75,88,924312643,19,213314532 10.5281/zenodo.815603,10.5281/zenodo.815602,1,software,https://github.com/essepuntato/rash,0,23,"{""JavaScript"": 5003107, ""XSLT"": 349255, ""TeX"": 328193, ""HTML"": 190984, ""Java"": 108383, ""CSS"": 47231, ""Python"": 8883, ""Shell"": 75}",ISC License,67,20,[],67,0,22,0,0,22,23,0,23,0 10.5281/zenodo.815629,10.5281/zenodo.815628,1,software,,0,,,,,,,,0,12,0,0,12,12,0,12,0 10.5281/zenodo.815824,10.5281/zenodo.815823,1,software,https://github.com/cgrudz/electric_grid_model_reduction,1,0,"{""JavaScript"": 4235852, ""MATLAB"": 208885, ""HTML"": 44320, ""CSS"": 3819}",MIT License,0,1,[],0,1,19,1,1,19,23,4496911,23,4496911 10.5281/zenodo.816171,10.5281/zenodo.816170,1,dataset,,10,,,,,,,,10,74,10,10,74,79,168548080,79,168548080 10.5281/zenodo.816174,10.5281/zenodo.816173,1,software,https://github.com/mecatsb/mecat,3,0,"{""MATLAB"": 105328, ""Objective-C"": 819, ""M"": 220}",GNU Affero General Public License v3.0,0,0,[],0,3,28,3,3,28,28,161817,28,161817 10.5281/zenodo.816223,10.5281/zenodo.816222,1,publication,,12,,,,,,,,12,20,12,12,20,20,1888140,20,1888140 10.5281/zenodo.816303,10.5281/zenodo.816302,1,dataset,,41,,,,,,,,12,108,41,12,108,115,7027802,115,7027802 10.5281/zenodo.816342,10.5281/zenodo.816341,1,publication,,21,,,,,,,,13,17,21,13,17,18,3055143,18,3055143 10.5281/zenodo.817332,10.5281/zenodo.817331,1,software,https://github.com/qmlcode/qml,5,32,"{""Python"": 196720, ""Fortran"": 154588}",MIT License,86,21,[],86,5,136,5,5,136,145,16793855,145,16793855 10.5281/zenodo.817467,10.5281/zenodo.817466,1,dataset,,0,,,,,,,,0,20,0,0,20,20,0,20,0 10.5281/zenodo.817502,10.5281/zenodo.817501,1,software,https://github.com/beccawilson/BigDataVR-simulated-data,2,0,"{""R"": 19325}",GNU General Public License v3.0,0,1,[],0,2,29,2,2,29,29,35956,29,35956 10.5281/zenodo.817613,10.5281/zenodo.817612,1,software,https://github.com/AndreNicolasChene/DRAGRACES,2,1,"{""IDL"": 60604}",MIT License,2,0,[],2,1,19,15,6,30,38,626461,20,83118 10.5281/zenodo.818235,10.5281/zenodo.818234,1,dataset,,5,,,,,,,,4,10,5,4,10,10,2897920,10,2897920 10.5281/zenodo.819479,10.5281/zenodo.819478,1,software,https://github.com/amcpherson/remixt,1,1,"{""Python"": 653994, ""C++"": 12383, ""R"": 8562, ""Perl"": 7395, ""Shell"": 1252, ""Dockerfile"": 514}",MIT License,3,3,[],3,1,12,1,1,12,12,188628,12,188628 10.5281/zenodo.819971,10.5281/zenodo.819970,1,software,https://github.com/crazyhottommy/pyflow-ChIPseq,10,15,"{""Python"": 21690, ""R"": 4482, ""Shell"": 1285}",MIT License,28,6,"[chip-seq, snakemake, python]",28,10,178,10,10,178,180,1455730,180,1455730 10.5281/zenodo.820555,10.5281/zenodo.820554,1,software,https://github.com/antonak/elections_study,2,0,"{""Jupyter Notebook"": 641135}",Apache License 2.0,0,1,[],0,2,40,2,2,40,41,770006,41,770006 10.5281/zenodo.820626,10.5281/zenodo.820625,1,dataset,,1,,,,,,,,1,12,1,1,12,12,52502,12,52502 10.5281/zenodo.820635,10.5281/zenodo.820634,1,software,https://github.com/LancePalmerStJude/YODEL,3,1,"{""Python"": 26847}",GNU General Public License v3.0,0,1,[],0,3,20,3,3,20,20,318093,20,318093 10.5281/zenodo.820846,10.5281/zenodo.820845,1,dataset,,0,,,,,,,,0,33,0,0,33,33,0,33,0 10.5281/zenodo.820866,10.5281/zenodo.820866,1,dataset,,11,,,,,,,,3,54,11,3,54,55,13443663,55,13443663 10.5281/zenodo.821011,10.5281/zenodo.821011,1,software,https://github.com/sbaltes/git-log-extractor,2,1,"{""Shell"": 5357}",GNU General Public License v3.0,0,1,[],0,2,5,3,3,8,10,94909,5,74470 10.5281/zenodo.821020,10.5281/zenodo.821020,1,software,https://github.com/sbaltes/git-log-parser,0,1,"{""Java"": 26914, ""Shell"": 1353}",Apache License 2.0,1,1,[],1,0,9,2,2,37,41,30515,9,0 10.5281/zenodo.821216,10.5281/zenodo.821215,1,software,https://github.com/RobertsLab/paper-Olurida-gene,,1,"{""R"": 9460}",,0,3,[],0,,,,,,,,, 10.5281/zenodo.821222,10.5281/zenodo.821222,1,software,https://github.com/ecohealthalliance/one-health-stats,7,0,"{""R"": 11301}",,1,1,[],1,7,40,7,7,40,42,20820681,42,20820681 10.5281/zenodo.821224,10.5281/zenodo.594174,1,software,https://github.com/hammerlab/isovar,0,6,"{""Python"": 414710, ""Jupyter Notebook"": 33476, ""Shell"": 460}",Apache License 2.0,11,13,[],11,0,20,0,0,36,38,0,21,0 10.5281/zenodo.821360,10.5281/zenodo.821359,1,software,,8,,,,,,,,8,49,8,8,49,50,606256,50,606256 10.5281/zenodo.821364,10.5281/zenodo.821363,1,software,,1,,,,,,,,1,35,1,1,35,36,12010001,36,12010001 10.5281/zenodo.821390,10.5281/zenodo.821389,1,software,,4,,,,,,,,3,42,4,3,42,45,73113600,45,73113600 10.5281/zenodo.821559,10.5281/zenodo.821492,1,software,https://github.com/atmoswing/atmoswing,0,2,"{""C++"": 5380201, ""CMake"": 136253, ""Python"": 75261, ""C"": 59290, ""HTML"": 51021, ""PowerShell"": 18186, ""Cuda"": 15849, ""Shell"": 6247, ""Perl"": 2938}",Other,0,1,"[analogue, forecast, downscaling, precipitation]",0,0,25,10,6,47,88,223665454,27,0 10.5281/zenodo.821569,10.5281/zenodo.821568,1,dataset,,7,,,,,,,,4,87,7,4,87,89,13066758138,89,13066758138 10.5281/zenodo.821598,10.5281/zenodo.821597,1,software,https://github.com/NSGeophysics/E4Dtools,11,0,"{""TeX"": 25349, ""MATLAB"": 18727}",,0,2,[],0,6,6,11,6,6,6,1911415,6,1911415 10.5281/zenodo.821599,10.5281/zenodo.821571,1,software,https://github.com/mrnajjari/Pump-PID-Controller-Pulsatile-flow,2,1,"{""Arduino"": 48083}",GNU Affero General Public License v3.0,2,2,"[pump-control, fluid-mechanics, arduino, physiological-flows, controller, pid, pulsatile-flow]",2,2,18,4,4,34,39,125272,18,62590 10.5281/zenodo.821604,10.5281/zenodo.821603,1,software,https://github.com/NSGeophysics/BERTtools,2,1,"{""MATLAB"": 10381, ""TeX"": 3216, ""Shell"": 183}",,1,2,[],1,1,6,2,1,6,6,155718,6,155718 10.5281/zenodo.821630,10.5281/zenodo.654587,1,software,,1,,,,,,,,1,13,1,1,26,34,336791,20,336791 10.5281/zenodo.821788,10.5281/zenodo.821787,1,software,https://github.com/esclabUIC/Traits_SocialNetworks,83,3,"{""HTML"": 1216656}",,1,1,[],1,82,649,83,82,649,682,94614273,682,94614273 10.5281/zenodo.822163,10.5281/zenodo.810195,1,software,https://github.com/izhbannikov/cophesim,1,0,"{""Python"": 38113, ""Shell"": 489}",,0,1,[],0,1,18,1,1,26,28,105015,18,105015 10.5281/zenodo.822381,10.5281/zenodo.822369,1,software,https://github.com/evalf/nutils,4,22,"{""Python"": 952884}",MIT License,25,17,"[finite-elements, python, nutils, simulation-framework, computational-physics, scientific-computing]",25,3,23,30,8,99,203,7978314,29,883936 10.5281/zenodo.822502,10.5281/zenodo.593170,1,software,https://github.com/hammerlab/pyensembl,0,37,"{""Python"": 234546, ""Pep8"": 3514, ""Shell"": 441}",Apache License 2.0,198,26,[],198,0,20,0,0,57,59,0,20,0 10.5281/zenodo.822503,10.5281/zenodo.593138,1,software,https://github.com/hammerlab/varcode,0,15,"{""Python"": 318401, ""Shell"": 342}",Apache License 2.0,47,12,[],47,0,14,0,0,23,23,0,14,0 10.5281/zenodo.822504,10.5281/zenodo.593159,1,software,https://github.com/hammerlab/mhctools,0,10,"{""Python"": 146241, ""Shell"": 155}",Apache License 2.0,34,13,[],34,0,21,0,0,26,26,0,21,0 10.5281/zenodo.822537,10.5281/zenodo.822536,1,dataset,,28,,,,,,,,15,193,28,15,193,206,1261101754,206,1261101754 10.5281/zenodo.822636,10.5281/zenodo.822635,1,software,https://github.com/CrossRef/logppj,0,1,"{""Java"": 96699}",,1,4,[crossref-labs],1,0,14,0,0,14,15,0,15,0 10.5281/zenodo.822784,10.5281/zenodo.597309,1,software,https://github.com/cggh/scikit-allel,3,21,"{""Jupyter Notebook"": 14432699, ""Python"": 1155881, ""PowerShell"": 3145, ""Batchfile"": 1823}",MIT License,121,23,[],121,3,234,11,7,333,407,119968373,284,32416779 10.5281/zenodo.823102,10.5281/zenodo.823101,1,software,https://github.com/snewhouse/enrichr-api,1,2,"{""Python"": 6540}",,10,2,[],10,1,19,1,1,19,23,45444,23,45444 10.5281/zenodo.823110,10.5281/zenodo.823109,1,publication,,8,,,,,,,,7,4,8,7,4,4,7418936,4,7418936 10.5281/zenodo.823249,10.5281/zenodo.823249,1,software,https://github.com/bradkav/runDM,3,0,"{""Mathematica"": 13052971, ""Jupyter Notebook"": 55404, ""Python"": 18140}",MIT License,2,4,[],2,2,33,3,2,33,36,59635137,36,59635137 10.5281/zenodo.823347,10.5281/zenodo.823346,1,dataset,,1,,,,,,,,1,5,1,1,5,6,1036937,6,1036937 10.5281/zenodo.823351,10.5281/zenodo.823350,1,dataset,,10,,,,,,,,6,17,10,6,17,17,5190255,17,5190255 10.5281/zenodo.823743,10.5281/zenodo.823742,1,software,https://github.com/crickert1234/ParamAP,0,0,"{""Python"": 52894}",GNU General Public License v2.0,2,2,"[python, numpy, scipy, matplotlib, parameterization, sinoatrial, myocyte, action-potential, ap]",2,0,67,2,2,124,139,2893458,70,0 10.5281/zenodo.823766,10.5281/zenodo.823765,1,dataset,,6,,,,,,,,3,33,6,3,33,34,23671808,34,23671808 10.5281/zenodo.823791,10.5281/zenodo.823790,1,software,https://github.com/taro-sakurai/zs-pgrp,0,0,"{""GAP"": 5648}",GNU General Public License v3.0,0,1,[],0,0,6,0,0,6,9,0,9,0 10.5281/zenodo.823917,10.5281/zenodo.823916,1,dataset,,12,,,,,,,,8,38,12,8,38,41,66960438156,41,66960438156 10.5281/zenodo.824029,10.5281/zenodo.824028,1,dataset,,0,,,,,,,,0,13,0,0,13,13,0,13,0 10.5281/zenodo.824047,10.5281/zenodo.824046,1,dataset,,0,,,,,,,,0,13,0,0,13,13,0,13,0 10.5281/zenodo.824051,10.5281/zenodo.824050,1,dataset,,0,,,,,,,,0,15,0,0,15,15,0,15,0 10.5281/zenodo.824073,10.5281/zenodo.824072,1,dataset,,0,,,,,,,,0,16,0,0,16,16,0,16,0 10.5281/zenodo.824079,10.5281/zenodo.824078,1,dataset,,0,,,,,,,,0,17,0,0,17,17,0,17,0 10.5281/zenodo.824085,10.5281/zenodo.824084,1,dataset,,0,,,,,,,,0,12,0,0,12,12,0,12,0 10.5281/zenodo.824089,10.5281/zenodo.824088,1,dataset,,0,,,,,,,,0,11,0,0,11,11,0,11,0 10.5281/zenodo.824091,10.5281/zenodo.824090,1,dataset,,0,,,,,,,,0,10,0,0,10,10,0,10,0 10.5281/zenodo.824099,10.5281/zenodo.824098,1,dataset,,0,,,,,,,,0,12,0,0,12,12,0,12,0 10.5281/zenodo.824103,10.5281/zenodo.824102,1,dataset,,0,,,,,,,,0,14,0,0,14,14,0,14,0 10.5281/zenodo.824205,10.5281/zenodo.824204,1,software,,6,,,,,,,,6,41,6,6,41,45,3480756,45,3480756 10.5281/zenodo.824264,10.5281/zenodo.824263,1,software,https://github.com/Axelrod-Python/axelrod-dojo,0,8,"{""Python"": 135334}",MIT License,9,3,"[evolutionary-algorithms, machine-learning]",9,0,4,11,10,109,120,253018,4,0 10.5281/zenodo.8244,,1,publication,,49,,,,,,,,45,8,49,45,8,8,15036042,8,15036042 10.5281/zenodo.824514,10.5281/zenodo.824514,1,software,https://github.com/deepankardatta/blandr,0,4,"{""R"": 120803}",,8,1,"[method-comparison, bland-altman, r, statistics, ggplot2]",8,0,24,2,2,83,102,167864,24,0 10.5281/zenodo.824567,10.5281/zenodo.592845,1,software,https://github.com/mwaskom/seaborn,5,988,"{""Python"": 899185, ""Makefile"": 357, ""Shell"": 143}","BSD 3-Clause ""New"" or ""Revised"" License",6193,240,[],6193,5,452,179,167,7481,9224,69010672,474,1562440 10.5281/zenodo.824657,10.5281/zenodo.824656,1,dataset,,0,,,,,,,,0,12,0,0,12,12,0,12,0 10.5281/zenodo.824813,10.5281/zenodo.824812,1,software,https://github.com/Lane-Library/wiki-extract,0,0,"{""Java"": 52351}",,0,1,[],0,0,27,0,0,27,31,0,31,0 10.5281/zenodo.824854,10.5281/zenodo.824853,1,dataset,,13,,,,,,,,9,56,13,9,56,57,4292195632,57,4292195632 10.5281/zenodo.825318,10.5281/zenodo.597956,1,software,https://github.com/FZJ-IEK3-VSA/tsam,0,12,"{""Python"": 57022}",Other,30,9,"[clustering, timeseries, energy-system, typical-periods, optimization, aggregation]",30,0,15,2,1,67,75,723692,17,0 10.5281/zenodo.825366,10.5281/zenodo.596917,1,software,https://github.com/leftygray/ART_For_Temporary_Residents,1,0,"{""R"": 2954}",MIT License,0,1,"[hiv, australia, modeling, cost-effectiveness, epidemiology, publications]",0,1,9,1,1,14,14,107511,9,107511 10.5281/zenodo.825460,10.5281/zenodo.825460,1,software,https://github.com/mlund/decaarginine,5,0,"{""HTML"": 2449176, ""Jupyter Notebook"": 1665887}",,0,2,[],0,2,35,8,3,42,52,1803095034,40,1263694770 10.5281/zenodo.825517,10.5281/zenodo.825516,1,dataset,,8,,,,,,,,3,23,8,3,23,29,1715946300,29,1715946300 10.5281/zenodo.825874,10.5281/zenodo.825873,1,software,https://github.com/gillespp/tip-link-regeneration-model,0,0,{},,0,0,[],0,0,3,0,0,3,3,0,3,0 10.5281/zenodo.825876,10.5281/zenodo.825875,1,software,,0,,,,,,,,0,3,0,0,3,3,0,3,0 10.5281/zenodo.825930,10.5281/zenodo.825929,1,dataset,,0,,,,,,,,0,8,0,0,8,8,0,8,0 10.5281/zenodo.826164,10.5281/zenodo.826164,1,dataset,,5,,,,,,,,3,26,13,9,42,49,269438191,29,117910529 10.5281/zenodo.826211,10.5281/zenodo.826210,1,software,https://github.com/fperraudeau/singlecellworkflow,14,5,"{""TeX"": 9928, ""R"": 2808, ""Makefile"": 258}",,13,6,"[single-cell, single-cell-rna-seq, dimensionality-reduction, normalization, clustering, lineage, differential-expression, workflow, r, bioconductor]",13,12,103,14,12,103,108,90528214,108,90528214 10.5281/zenodo.826436,10.5281/zenodo.804055,1,software,https://github.com/CamFlow/information-flow-patch,38,1,"{""C"": 530693, ""Makefile"": 3182}",GNU General Public License v2.0,0,2,[],0,23,1,3093,110,79,133,419439650,1,4874488 10.5281/zenodo.826444,10.5281/zenodo.826443,1,software,https://github.com/KnowEnG/ProGENI,0,3,"{""Python"": 37528}",Other,3,3,[],3,0,22,0,0,22,24,0,24,0 10.5281/zenodo.826575,10.5281/zenodo.826574,1,publication,,39,,,,,,,,13,20,39,13,20,21,8398917,21,8398917 10.5281/zenodo.826911,10.5281/zenodo.591669,1,software,https://github.com/astropy/astroquery,2,189,"{""Python"": 2192465, ""HTML"": 977519, ""Shell"": 8576}","BSD 3-Clause ""New"" or ""Revised"" License",230,32,"[astropy, python, astropy-affiliated, astronomy]",230,2,31,37,8,638,748,106780000,33,6226882 10.5281/zenodo.826926,10.5281/zenodo.826925,1,software,https://github.com/xgcm/xgcm,4,27,"{""Python"": 224981, ""Jupyter Notebook"": 129014}",MIT License,62,25,[],62,4,50,4,4,50,53,1452516,53,1452516 10.5281/zenodo.826956,10.5281/zenodo.826955,1,dataset,,0,,,,,,,,0,4,0,0,4,4,0,4,0 10.5281/zenodo.827157,10.5281/zenodo.827156,1,publication,,12,,,,,,,,12,19,12,12,19,19,18023532,19,18023532 10.5281/zenodo.827266,10.5281/zenodo.827265,1,software,https://github.com/gomez444/Beta-N-Mixture,5,0,"{""R"": 32481}",,0,0,[],0,5,37,5,5,37,37,2919655,37,2919655 10.5281/zenodo.8296,,1,dataset,,3,,,,,,,,3,133,3,3,133,174,47292580,174,47292580 10.5281/zenodo.8299,,1,software,,4,,,,,,,,4,225,4,4,225,227,2329512,227,2329512 10.5281/zenodo.829911,10.5281/zenodo.592393,1,software,https://github.com/Chandra-MARX/marxs,3,6,"{""Python"": 612779, ""Shell"": 54673, ""JavaScript"": 6949, ""HTML"": 3188}",GNU General Public License v3.0,2,1,"[python, raytracing, astronomy]",2,2,158,3,2,164,173,2441976,163,2441976 10.5281/zenodo.830025,10.5281/zenodo.830024,1,dataset,,1,,,,,,,,1,11,1,1,11,11,15746025,11,15746025 10.5281/zenodo.830056,10.5281/zenodo.830055,1,software,https://github.com/mgschiavon/BayFish,3,1,"{""MATLAB"": 79622, ""C++"": 26280}",GNU General Public License v3.0,0,1,[],0,3,36,3,3,36,36,385773,36,385773 10.5281/zenodo.830278,10.5281/zenodo.599901,1,dataset,,138,,,,,,,,4,25,138,4,37,41,23782340714,26,23782340714 10.5281/zenodo.8303,,1,software,,31,,,,,,,,23,311,31,23,311,314,152803,314,152803 10.5281/zenodo.8304,,1,publication,,72,,,,,,,,62,431,72,62,431,434,24601320,434,24601320 10.5281/zenodo.830530,10.5281/zenodo.830529,1,dataset,,6,,,,,,,,3,24,6,3,24,26,1153941,26,1153941 10.5281/zenodo.830568,10.5281/zenodo.830567,1,software,https://github.com/greenelab/GEA_Community_Detection,0,5,"{""Python"": 36349, ""R"": 6899, ""Shell"": 936}","BSD 3-Clause ""New"" or ""Revised"" License",5,2,"[pathway-analysis, enrichment-analysis, detection-network, kegg-pathway, pid]",5,0,10,0,0,10,10,0,10,0 10.5281/zenodo.8307,,1,publication,,32,,,,,,,,31,58,32,31,58,62,60871072,62,60871072 10.5281/zenodo.831154,10.5281/zenodo.831153,1,dataset,,172,,,,,,,,145,418,172,145,418,463,243495579356,463,243495579356 10.5281/zenodo.831183,10.5281/zenodo.831182,1,dataset,,0,,,,,,,,0,7,0,0,13,15,0,7,0 10.5281/zenodo.831493,10.5281/zenodo.831492,1,publication,,649,,,,,,,,574,325,649,574,325,349,2168216842,349,2168216842 10.5281/zenodo.831631,10.5281/zenodo.831630,1,software,https://github.com/hzi-bifo/SDplots,0,1,{},,1,6,[],1,0,15,0,0,15,17,0,17,0 10.5281/zenodo.831657,10.5281/zenodo.831656,1,software,,1,,,,,,,,1,32,1,1,32,34,891398,34,891398 10.5281/zenodo.831935,10.5281/zenodo.831934,1,publication,,5,,,,,,,,3,13,5,3,13,14,3188040,14,3188040 10.5281/zenodo.832236,10.5281/zenodo.832235,1,software,https://github.com/gh-ecs/After_ParTIES,0,2,"{""Python"": 11769}","BSD 2-Clause ""Simplified"" License",0,1,[],0,0,19,0,0,19,19,0,19,0 10.5281/zenodo.832282,10.5281/zenodo.824263,1,software,https://github.com/Axelrod-Python/axelrod-dojo,10,8,"{""Python"": 135334}",MIT License,9,3,"[evolutionary-algorithms, machine-learning]",9,10,96,11,10,109,120,253018,98,194360 10.5281/zenodo.832287,10.5281/zenodo.832286,1,publication,,37,,,,,,,,21,66,37,21,66,73,4485388085,73,4485388085 10.5281/zenodo.832795,10.5281/zenodo.832794,1,software,https://github.com/buck06191/WeBCMD,2,0,"{""Dockerfile"": 1424, ""Shell"": 174}",MIT License,1,1,[],1,1,16,8,4,20,21,58458,16,14502 10.5281/zenodo.832845,10.5281/zenodo.802916,1,software,https://github.com/manalirupji/CASAS,18,0,"{""R"": 186424}",,2,1,[],2,14,124,18,14,144,149,15013742,127,15013742 10.5281/zenodo.832849,10.5281/zenodo.832848,1,software,https://github.com/chr1swallace/cd4-pchic,1,0,"{""R"": 409243, ""Ruby"": 16402, ""Shell"": 9656, ""Perl"": 6359}",,0,3,[],0,1,19,1,1,19,20,179162,20,179162 10.5281/zenodo.832899,10.5281/zenodo.832898,1,dataset,,13,,,,,,,,6,54,13,6,54,54,1350087115,54,1350087115 10.5281/zenodo.832921,10.5281/zenodo.832920,1,dataset,,5,,,,,,,,5,31,5,5,31,31,252824970,31,252824970 10.5281/zenodo.833536,10.5281/zenodo.833535,1,software,,10,,,,,,,,10,34,10,10,34,39,129186430,39,129186430 10.5281/zenodo.833540,10.5281/zenodo.833539,1,software,,11,,,,,,,,10,45,11,10,45,47,674707429,47,674707429 10.5281/zenodo.833572,10.5281/zenodo.833571,1,software,https://github.com/Oshlack/splatter-paper,0,5,"{""R"": 15384, ""Shell"": 990}",MIT License,10,1,"[r, bioinformatics, science, paper, single-cell, rna-seq, single-cell-rna-seq, simulation]",10,0,9,4,3,44,47,147662288,9,0 10.5281/zenodo.833574,10.5281/zenodo.833573,1,software,https://github.com/Oshlack/splatter,0,24,"{""R"": 278661, ""CSS"": 335}",GNU General Public License v3.0,64,4,"[bioconductor, simulation, scrna-seq, bioinformatics]",64,0,10,8,4,25,26,22196792,10,0 10.5281/zenodo.833789,10.5281/zenodo.833788,1,software,https://github.com/khufkens/gee_subset,10,17,"{""Python"": 11466}",GNU Affero General Public License v3.0,27,5,[],27,10,94,10,10,94,101,824260,101,824260 10.5281/zenodo.833875,10.5281/zenodo.596912,1,software,https://github.com/bjmorgan/bsym,2,3,"{""Python"": 103893, ""TeX"": 5750}",MIT License,7,1,[],7,1,6,23,5,50,53,50495583,6,5619246 10.5281/zenodo.833879,10.5281/zenodo.595528,1,software,https://github.com/DRL/blobtools,6,21,"{""Python"": 163059, ""Dockerfile"": 594}",GNU General Public License v3.0,71,8,"[genome-assembly, visualisation, blobtools, quality-control, contamination]",71,5,33,8,7,356,394,77180037,36,57817656 10.5281/zenodo.8339,,1,dataset,,8,,,,,,,,4,43,8,4,43,44,13953143,44,13953143 10.5281/zenodo.834321,10.5281/zenodo.834320,1,publication,,4,,,,,,,,4,24,4,4,24,25,607637836,25,607637836 10.5281/zenodo.834324,10.5281/zenodo.834323,1,software,,3,,,,,,,,3,25,3,3,25,25,315935556,25,315935556 10.5281/zenodo.834394,10.5281/zenodo.826922,1,software,https://github.com/brian-rose/ebm-analytical,1,0,"{""OpenEdge ABL"": 6207269, ""Jupyter Notebook"": 1620694, ""Python"": 23466}",MIT License,1,1,[],1,1,9,1,1,10,11,2810961,9,2810961 10.5281/zenodo.834504,10.5281/zenodo.834503,1,publication,,4,,,,,,,,4,8,4,4,8,8,817492,8,817492 10.5281/zenodo.834610,10.5281/zenodo.834609,1,publication,,7,,,,,,,,4,119,7,4,119,123,11508674,123,11508674 10.5281/zenodo.834661,10.5281/zenodo.834660,1,software,https://github.com/buck06191/bcmd-web,0,1,"{""Fortran"": 504385, ""Python"": 451929, ""C"": 66609, ""JavaScript"": 49632, ""HTML"": 41749, ""Shell"": 15231, ""Makefile"": 12251, ""CSS"": 2658, ""TeX"": 388}",MIT License,1,1,[],1,0,7,0,0,8,8,0,7,0 10.5281/zenodo.834900,10.5281/zenodo.834899,1,dataset,,2,,,,,,,,1,13,2,1,13,14,2428416500,14,2428416500 10.5281/zenodo.834928,10.5281/zenodo.834927,1,software,https://github.com/hirschhm/ciderseq,3,1,"{""Python"": 56530}",GNU Affero General Public License v3.0,1,2,[],1,3,30,3,3,30,32,1566486,32,1566486 10.5281/zenodo.834960,10.5281/zenodo.834960,1,software,https://github.com/akotlar/bystro,0,6,"{""Perl"": 707663, ""Shell"": 12067, ""Dockerfile"": 999}",Apache License 2.0,19,4,"[genomics, genomics-search, bioinformatics, bioinformatics-pipeline, bioinformatics-analysis, bioinformatics-databases, bioinformatics-algorithms, bioinformatics-scripts]",19,0,18,2,1,18,19,17078602,18,0 10.5281/zenodo.835037,10.5281/zenodo.835036,1,software,https://github.com/cytoscape/cytoscape.js-panzoom,2,23,"{""CSS"": 86811, ""JavaScript"": 20835, ""HTML"": 2146}",MIT License,32,28,"[cytoscapejs, cytoscapejs-extension]",32,1,21,15,8,89,93,4678900,23,579558 10.5281/zenodo.835063,10.5281/zenodo.713633,1,publication,,3,,,,,,,,3,29,3,3,45,46,45662046,30,45662046 10.5281/zenodo.8351,,1,software,,3,,,,,,,,2,50,3,2,50,50,2305194,50,2305194 10.5281/zenodo.835226,10.5281/zenodo.835225,1,software,,23,,,,,,,,19,31,23,19,31,31,14806509,31,14806509 10.5281/zenodo.835527,10.5281/zenodo.835526,1,software,https://github.com/sergsb/clever,1,2,"{""Python"": 40482}",Apache License 2.0,0,1,"[cheminformatics, physical-chemistry]",0,1,15,1,1,15,15,27380,15,27380 10.5281/zenodo.835844,10.5281/zenodo.835843,1,software,https://github.com/lgs85/SW_Early_life_telomeres,5,0,"{""TeX"": 942084, 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10.5281/zenodo.836800,10.5281/zenodo.595012,1,software,https://github.com/jordiabante/HiMMe,0,0,"{""Perl"": 41805, ""Shell"": 15264, ""R"": 1528}",MIT License,0,1,[],0,0,15,0,0,21,22,0,16,0 10.5281/zenodo.836838,10.5281/zenodo.836837,1,software,https://github.com/phate/ggraph,0,0,"{""C++"": 86294, ""Makefile"": 1148}",,0,2,[],0,0,29,0,0,29,29,0,29,0 10.5281/zenodo.837869,10.5281/zenodo.837868,1,dataset,,0,,,,,,,,0,7,0,0,7,7,0,7,0 10.5281/zenodo.837884,10.5281/zenodo.837883,1,software,,0,,,,,,,,0,27,0,0,27,28,0,28,0 10.5281/zenodo.837886,10.5281/zenodo.837885,1,software,https://github.com/legrandp/xdsme,2,6,"{""Python"": 712005, ""HTML"": 13228, ""Shell"": 2573}",Other,6,2,"[xds, kappa, python, experimental, diffraction-analysis]",6,2,25,8,5,44,47,92838008,25,23196742 10.5281/zenodo.838190,10.5281/zenodo.838189,1,software,https://github.com/robjohnnoble/HyCAT,2,0,"{""C"": 100856, ""Shell"": 2531}",MIT License,0,1,[],0,2,45,2,2,45,45,141852,45,141852 10.5281/zenodo.838200,10.5281/zenodo.838199,1,software,https://github.com/helenebioinf/BAT,0,2,"{""Perl"": 139398, ""R"": 27339, ""Shell"": 6732}",MIT License,1,0,[],1,0,20,0,0,20,20,0,20,0 10.5281/zenodo.838587,10.5281/zenodo.593187,1,software,https://github.com/ropensci/rdefra,0,4,"{""R"": 29937, ""TeX"": 1206}",,9,7,"[r, rstats, r-package, uk, defra, air-pollution, air-quality, air-pollution-levels, peer-reviewed]",9,0,10,0,0,15,15,0,10,0 10.5281/zenodo.838667,10.5281/zenodo.838666,1,publication,,2,,,,,,,,2,2,2,2,2,2,1296968,2,1296968 10.5281/zenodo.838685,10.5281/zenodo.838684,1,publication,https://github.com/richarddmorey/psychology_resolution,1,3,"{""TeX"": 1061068, ""R"": 25166}",,19,4,[],19,1,59,1,1,59,63,1613481,63,1613481 10.5281/zenodo.838730,10.5281/zenodo.838642,1,software,https://github.com/bobdouma/priming-for-defense-model,2,0,"{""R"": 52560}",GNU General Public License v3.0,0,1,[],0,1,13,2,1,14,16,31344,14,31344 10.5281/zenodo.838734,10.5281/zenodo.838733,1,dataset,,92,,,,,,,,82,1616,92,82,1616,1697,394026356376,1697,394026356376 10.5281/zenodo.838793,10.5281/zenodo.592046,1,software,https://github.com/phenoscape/Phenex,0,2,"{""Java"": 719300, ""Scala"": 727, ""Batchfile"": 110, ""Shell"": 104}",MIT License,7,5,"[ontology-annotation, character-matrix]",7,0,17,1,1,49,53,29963439,18,0 10.5281/zenodo.838795,10.5281/zenodo.838794,1,software,https://github.com/USGS-R/streamMetabolizer,3,10,"{""Stan"": 1821880, ""R"": 552689}",Creative Commons Zero v1.0 Universal,9,11,"[r, rstats, usgs]",9,2,58,10,4,74,89,10303024,61,2425773 10.5281/zenodo.838797,10.5281/zenodo.838796,1,software,,2,,,,,,,,2,25,2,2,24,25,868474,26,868474 10.5281/zenodo.838803,10.5281/zenodo.838802,1,dataset,,12,,,,,,,,10,62,12,10,62,65,419165016,65,419165016 10.5281/zenodo.838974,10.5281/zenodo.838973,1,software,https://github.com/Kriechi/building-level-office-environment-dataset,10,0,"{""Python"": 82649, ""Shell"": 361}",MIT License,3,1,"[dataset, energy, energy-data, current-voltage]",3,10,73,10,10,73,75,311740,75,311740 10.5281/zenodo.839580,10.5281/zenodo.839580,1,dataset,https://github.com/weecology/forecasts,0,2,{},Creative Commons Zero v1.0 Universal,0,2,[],0,0,0,1272,138,149,174,12740260874,0,0 10.5281/zenodo.839815,10.5281/zenodo.839810,1,software,https://github.com/FluvialSeds/rampedpyrox,7,0,"{""Python"": 189099}",Other,1,2,[],1,7,56,7,7,56,61,5891557,59,5891557 10.5281/zenodo.839849,10.5281/zenodo.839848,1,dataset,,0,,,,,,,,0,0,0,0,0,0,0,0,0 10.5281/zenodo.839851,10.5281/zenodo.839850,1,software,https://github.com/McMahonLab/OMD-TOIL,1,4,"{""HTML"": 922676, ""Python"": 9210}",,2,2,[],2,1,18,1,1,18,18,394238,18,394238 10.5281/zenodo.839856,10.5281/zenodo.839856,1,software,https://github.com/joshamilton/reverseEcology,1,0,"{""Python"": 49122}",MIT License,0,1,[],0,1,6,1,1,6,8,172789,8,172789 10.5281/zenodo.839859,10.5281/zenodo.839858,1,software,https://github.com/joshamilton/Hamilton_acI_2017,1,1,"{""Jupyter Notebook"": 209935, ""TeX"": 165291, ""Python"": 86594, ""Perl"": 6540, ""Shell"": 908, ""Makefile"": 543}",MIT License,3,2,[],3,1,11,1,1,11,11,159127428,11,159127428 10.5281/zenodo.839863,10.5281/zenodo.839862,1,software,https://github.com/swolff9/mcfost-python,0,0,"{""Jupyter Notebook"": 570429, ""Python"": 187682}",,0,1,[],0,0,20,0,0,20,21,0,21,0 10.5281/zenodo.840333,10.5281/zenodo.797943,1,dataset,,3694,,,,,,,,324,2117,5363,629,4660,5554,39539849955,2650,30408007341 10.5281/zenodo.840347,10.5281/zenodo.840346,1,software,https://github.com/pkienzle/periodictable,0,15,"{""Python"": 443256, ""Shell"": 3344}",,56,9,[],56,0,12,0,0,12,13,0,13,0 10.5281/zenodo.840352,10.5281/zenodo.840036,1,dataset,,156,,,,,,,,134,57,163,138,64,68,5555279,59,5146444 10.5281/zenodo.840562,10.5281/zenodo.840561,1,software,https://github.com/MRN-Code/coinstac,4,6,"{""JavaScript"": 653230, 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10.5281/zenodo.8418,,1,dataset,,14,,,,,,,,14,148,14,14,148,155,169957704,155,169957704 10.5281/zenodo.842003,10.5281/zenodo.842002,1,software,https://github.com/mpurg/qtools,2,6,"{""Python"": 582089, ""Roff"": 474523, ""Shell"": 19219, ""TeX"": 3776}",MIT License,13,9,[],13,2,70,2,2,70,71,13289752,71,13289752 10.5281/zenodo.842016,10.5281/zenodo.842015,1,publication,,110,,,,,,,,95,224,110,95,224,234,441134760,234,441134760 10.5281/zenodo.842713,10.5281/zenodo.842712,1,software,https://github.com/LSSTScienceCollaborations/ObservingStrategy,17,70,"{""TeX"": 1497383, ""Jupyter Notebook"": 210812, ""Shell"": 9644, ""Python"": 8318, ""Makefile"": 1017}",,45,56,[],45,16,677,17,16,677,710,1294892312,710,1294892312 10.5281/zenodo.842785,10.5281/zenodo.825186,1,software,https://github.com/lowderchris/FRoDO,0,0,"{""Python"": 104387, ""Fortran"": 41775}",,1,1,[],1,0,11,1,1,22,28,36729,12,0 10.5281/zenodo.842900,10.5281/zenodo.842900,1,software,https://github.com/yanfenfu/Fermentation-project,3,0,"{""Jupyter Notebook"": 18126}",,0,1,[],0,3,26,3,3,26,26,450789,26,450789 10.5281/zenodo.8431,,1,dataset,,1,,,,,,,,1,52,1,1,52,52,657801076,52,657801076 10.5281/zenodo.843510,10.5281/zenodo.843509,1,publication,,162,,,,,,,,143,62,162,143,62,75,4654479834,75,4654479834 10.5281/zenodo.843517,10.5281/zenodo.843516,1,software,https://github.com/thmosqueiro/ABBAS,0,2,"{""Python"": 28585}",GNU General Public License v3.0,4,3,"[honeybee, recruitment-task, simulation, ecology, foraging, task-allocation, animals]",4,0,13,0,0,13,13,0,13,0 10.5281/zenodo.843607,10.5281/zenodo.843606,1,dataset,,14,,,,,,,,12,62,14,12,62,65,438676,65,438676 10.5281/zenodo.844045,10.5281/zenodo.795283,1,software,,14,,,,,,,,7,34,40,14,124,154,36872639,40,13424930 10.5281/zenodo.8443,,1,dataset,,77,,,,,,,,32,122,77,32,122,139,102832111304,139,102832111304 10.5281/zenodo.844372,10.5281/zenodo.844371,1,dataset,,1,,,,,,,,1,31,1,1,31,32,2566,32,2566 10.5281/zenodo.844463,10.5281/zenodo.844463,1,software,https://github.com/chrisquince/DESMAN,2,16,"{""Python"": 225402, ""Perl"": 18921, ""Nextflow"": 7450, ""C"": 5213, ""R"": 1951, ""Shell"": 470}",Other,51,12,[],51,2,14,2,2,21,24,75681852,14,75681852 10.5281/zenodo.844837,10.5281/zenodo.844837,1,dataset,,17,,,,,,,,9,43,17,9,43,45,1418611,45,1418611 10.5281/zenodo.844866,10.5281/zenodo.597591,1,software,https://github.com/severinson/coded-computing-tools,5,0,"{""Python"": 342992, ""Makefile"": 217, ""Shell"": 103}",Apache License 2.0,0,1,[],0,2,3,22,5,27,29,208223716,3,374220 10.5281/zenodo.844914,10.5281/zenodo.844913,1,software,https://github.com/berlinguette/Parlane2017,0,0,{},Apache License 2.0,0,0,[],0,0,4,0,0,4,4,0,4,0 10.5281/zenodo.8451,,1,dataset,,216,,,,,,,,80,382,216,80,382,397,971985933,397,971985933 10.5281/zenodo.845352,10.5281/zenodo.845352,1,software,,9,,,,,,,,5,40,9,5,40,42,298500322,42,298500322 10.5281/zenodo.845355,10.5281/zenodo.845354,1,software,https://github.com/chartgerink/2015poldermans,0,0,"{""HTML"": 795983, ""TeX"": 66325, ""R"": 17194}",Creative Commons Zero v1.0 Universal,0,1,[],0,0,26,0,0,26,38,0,38,0 10.5281/zenodo.845435,10.5281/zenodo.845434,1,software,https://github.com/meneguzzi/htn-goco,0,0,"{""Python"": 11656, ""Java"": 2069, ""Shell"": 917}",,1,5,[],1,0,6,0,0,6,6,0,6,0 10.5281/zenodo.845465,10.5281/zenodo.845464,1,software,https://github.com/woolthuis/fluvac,2,0,"{""Jupyter Notebook"": 1378692}",,0,0,[],0,2,8,2,2,8,8,1868378,8,1868378 10.5281/zenodo.845491,10.5281/zenodo.845490,1,publication,,41,,,,,,,,37,122,41,37,122,133,74770839,133,74770839 10.5281/zenodo.8455,,1,dataset,,157,,,,,,,,46,373,157,46,373,387,859260662,387,859260662 10.5281/zenodo.845707,10.5281/zenodo.845706,1,dataset,,50,,,,,,,,33,102,50,33,102,109,46030547455,109,46030547455 10.5281/zenodo.845743,10.5281/zenodo.845742,1,software,https://github.com/fredRos/runs,2,0,"{""C++"": 61573, ""Mathematica"": 8980, ""CMake"": 8286, ""C"": 8249}",MIT License,2,1,"[test-statistic, runs, multiplicity-representation, integer-partition, cplusplus-11, mathematica]",2,1,7,8,3,18,20,318836,7,77948 10.5281/zenodo.845888,10.5281/zenodo.845887,1,software,https://github.com/Sumner-Group/CFOUR-parallel-anharm-scripts,2,0,{},MIT License,0,0,"[computational-chemistry, cfour, anharmonic-frequencies]",0,2,19,2,2,19,19,15136,19,15136 10.5281/zenodo.846278,10.5281/zenodo.846277,1,software,https://github.com/NaturalHistoryMuseum/river-dolphin-convergence,3,1,"{""PLSQL"": 184668, ""R"": 72821}",MIT License,0,7,[],0,3,54,3,3,54,56,305886,56,305886 10.5281/zenodo.846300,10.5281/zenodo.846300,1,software,https://github.com/ag105020/Azoto2,11,0,"{""Python"": 243314}",,0,0,[],0,9,29,31,14,45,58,1745016,30,682330 10.5281/zenodo.846364,10.5281/zenodo.846363,1,software,https://github.com/Sumner-Group/Gaussian-External-CFOUR,0,0,{},MIT License,0,0,"[anharmonic-frequencies, sextic-distortion, gaussian16, cfour, computational-chemistry, electronic-structure]",0,0,20,0,0,20,20,0,20,0 10.5281/zenodo.846473,10.5281/zenodo.846472,1,dataset,,6,,,,,,,,4,67,6,4,67,70,23540206038,70,23540206038 10.5281/zenodo.846744,10.5281/zenodo.846743,1,publication,,76,,,,,,,,68,27,76,68,27,30,164372471,30,164372471 10.5281/zenodo.846830,10.5281/zenodo.846830,1,dataset,,42,,,,,,,,27,52,42,27,52,57,311162,57,311162 10.5281/zenodo.846863,10.5281/zenodo.593092,1,software,https://github.com/GNilsonne/SleepyBrain-Analyses,3,0,"{""MATLAB"": 4047047, ""R"": 577774, ""Objective-C"": 47473}",,2,3,[],2,3,34,16,13,108,123,2052568542,35,402263742 10.5281/zenodo.846864,10.5281/zenodo.593292,1,software,https://github.com/calliope-project/calliope,2,26,"{""Python"": 857254, ""TeX"": 2666, ""Batchfile"": 1474, ""HTML"": 1361, ""Makefile"": 1226}",Apache License 2.0,82,14,"[python, pyomo, energy, optimisation, energy-system]",82,2,21,43,8,145,154,425517074,22,11117680 10.5281/zenodo.846898,10.5281/zenodo.846897,1,software,https://github.com/UIUC-UQ/Deep-Learning-for-Reliability-Analysis,6,0,{},MIT License,0,0,[],0,5,43,6,5,43,45,166749732,45,166749732 10.5281/zenodo.846904,10.5281/zenodo.846904,1,software,https://github.com/tcompa/BoseHubbardGutzwiller,6,0,"{""Python"": 9571}",MIT License,0,1,"[quantum-physics, optical-lattices, variational-method, simulated-annealing, monte-carlo]",0,5,50,8,6,56,60,73840,51,55926 10.5281/zenodo.847176,10.5281/zenodo.847176,1,dataset,,11,,,,,,,,7,26,11,7,26,28,1453231,28,1453231 10.5281/zenodo.847182,10.5281/zenodo.847182,1,software,https://github.com/apozas/gaussianotto,2,0,"{""Jupyter Notebook"": 278601, ""MATLAB"": 27067, ""Python"": 9530}",GNU General Public License v3.0,0,0,"[quantum-thermodynamics, thermodynamics, correlations, physics]",0,2,26,2,2,31,34,452684,28,452684 10.5281/zenodo.8475,,1,software,https://github.com/svenkreiss/decouple,6,3,"{""Python"": 254433}",MIT License,2,1,[],2,4,1188,6,4,1188,1297,1599414,1297,1599414 10.5281/zenodo.847774,10.5281/zenodo.847773,1,software,,10,,,,,,,,9,61,10,9,61,63,507682280,63,507682280 10.5281/zenodo.8481,,1,software,,18,,,,,,,,11,85,18,11,85,90,4544953,90,4544953 10.5281/zenodo.848211,10.5281/zenodo.848211,1,dataset,,19,,,,,,,,8,37,26,11,41,42,195448782,37,140581981 10.5281/zenodo.848218,10.5281/zenodo.848217,1,software,https://github.com/rougier/random-walk,0,4,"{""Python"": 4764}","BSD 2-Clause ""Simplified"" License",3,4,"[random-walk, python]",3,0,2,5,2,33,36,26119,2,0 10.5281/zenodo.848256,10.5281/zenodo.597221,1,software,https://github.com/lwtnn/lwtnn,9,29,"{""C++"": 113782, ""Python"": 69483, ""Shell"": 35950, ""CMake"": 12713, ""Makefile"": 3074}",MIT License,68,7,[],68,5,19,99,15,390,446,8345701,19,824661 10.5281/zenodo.848273,10.5281/zenodo.848272,1,dataset,,22,,,,,,,,11,28,22,11,28,31,492453,31,492453 10.5281/zenodo.848280,10.5281/zenodo.802038,1,software,https://github.com/AGenews/MDS,3,0,"{""Arduino"": 11392, ""Python"": 4211}",MIT License,1,1,[],1,3,28,3,3,32,42,55572021,32,55572021 10.5281/zenodo.848285,10.5281/zenodo.848284,1,software,https://github.com/benureau/r5,0,2,"{""Python"": 7911}","BSD 2-Clause ""Simplified"" License",5,2,[],5,0,23,0,0,23,23,0,23,0 10.5281/zenodo.848831,10.5281/zenodo.596635,1,software,https://github.com/pescadores/pescador,3,7,"{""Python"": 121406, ""Shell"": 876}",ISC License,58,8,"[python, machine-learning, nyucds]",58,3,5,11,5,18,18,785759,5,199407 10.5281/zenodo.849091,10.5281/zenodo.849090,1,publication,,8,,,,,,,,8,13,8,8,13,13,32231128,13,32231128 10.5281/zenodo.8501,,1,publication,,16,,,,,,,,16,15,16,16,15,16,19306624,16,19306624 10.5281/zenodo.8516,,1,software,,6,,,,,,,,5,58,6,5,58,62,114513648,62,114513648 10.5281/zenodo.852652,10.5281/zenodo.852651,1,dataset,,25,,,,,,,,21,86,25,21,86,90,6232325,90,6232325 10.5281/zenodo.852711,10.5281/zenodo.852710,1,software,https://github.com/mohdnajib1985/FOWebPage,3,0,"{""Web Ontology Language"": 3960254, ""HTML"": 404343, ""CSS"": 9663}",,0,0,[],0,3,17,3,3,17,20,852411,20,852411 10.5281/zenodo.853194,10.5281/zenodo.853193,1,software,https://github.com/BioAlgs/MetaGen,2,0,"{""Shell"": 16749, ""R"": 9583, ""C++"": 1622}","BSD 2-Clause ""Simplified"" License",0,1,[],0,1,40,4,1,69,70,479620,40,210558 10.5281/zenodo.853452,10.5281/zenodo.810857,1,software,https://github.com/demh/cuRRBS,3,4,"{""HTML"": 1919414, ""Python"": 172521, ""R"": 170353, ""Shell"": 2649}",GNU General Public License v3.0,1,2,[],1,2,15,5,3,25,28,363892966,16,218335566 10.5281/zenodo.854445,10.5281/zenodo.854444,1,dataset,,2,,,,,,,,1,18,2,1,18,19,44043564,19,44043564 10.5281/zenodo.854658,10.5281/zenodo.854657,1,software,https://github.com/EhrmannS/2017_BMC-Ecol_Environmental-Drivers-of-Ixodes,1,0,"{""R"": 123539}",,0,1,[],0,1,9,1,1,9,10,39112,10,39112 10.5281/zenodo.854694,10.5281/zenodo.854693,1,software,https://github.com/shortlab/2017-Fractalline-Crud,0,0,"{""Python"": 20632}",GNU Lesser General Public License v2.1,0,3,[],0,0,8,0,0,8,8,0,8,0 10.5281/zenodo.855292,10.5281/zenodo.853186,1,software,https://github.com/mctools/ncrystal,6,2,"{""C++"": 1075723, ""Python"": 54594, ""C"": 18696, ""CMake"": 10778, ""Shell"": 2876}",Other,5,4,"[physics-simulation, monte-carlo-simulation, neutrons, scattering]",5,3,15,120,24,157,216,41308407,17,1873314 10.5281/zenodo.857850,10.5281/zenodo.857849,1,publication,,26,,,,,,,,24,5,26,24,5,5,810541446,5,810541446 10.5281/zenodo.858631,10.5281/zenodo.858630,1,dataset,,3,,,,,,,,3,15,3,3,15,16,189570,16,189570 10.5281/zenodo.863051,10.5281/zenodo.863050,1,software,https://github.com/jhollist/lakemorpho_manuscript,3,0,"{""TeX"": 79567, ""HTML"": 21885, ""Makefile"": 187}",,1,2,[],1,3,17,3,3,17,18,34095768,18,34095768 10.5281/zenodo.867646,10.5281/zenodo.867645,1,dataset,,1598,,,,,,,,138,301,1628,161,393,451,1135654589782,328,1114718256652 10.5281/zenodo.8747,,1,dataset,,13,,,,,,,,6,81,13,6,81,83,29556736,83,29556736 10.5281/zenodo.877320,10.5281/zenodo.877319,1,software,https://github.com/UnixJunkie/fragger,1,0,"{""OCaml"": 266764, ""C++"": 23957, ""Shell"": 2566, ""C"": 1345, ""Makefile"": 1247}",GNU Lesser General Public License v2.1,4,2,"[rmsd, protein-fragments-picker, database, protein-fragments, ocaml, protein-design]",4,1,65,1,1,65,65,433707,65,433707 10.5281/zenodo.880836,10.5281/zenodo.880835,1,software,https://github.com/CPrescher/Glassure,3,0,"{""Jupyter Notebook"": 1774575, ""Python"": 385613}",Other,2,1,[],2,3,47,3,3,47,50,5298747,50,5298747 10.5281/zenodo.882971,10.5281/zenodo.882970,1,software,,31,,,,,,,,24,405,31,24,405,461,238535979,461,238535979 10.5281/zenodo.883081,10.5281/zenodo.883070,1,software,https://github.com/NTNU-NLOM/P-SHG,3,1,"{""MATLAB"": 69989}",,1,0,[],1,3,11,3,3,11,12,331548,11,331548 10.5281/zenodo.883110,10.5281/zenodo.883109,1,dataset,,147,,,,,,,,66,92,147,66,92,105,14537439447,105,14537439447 10.5281/zenodo.883448,10.5281/zenodo.883447,1,software,https://github.com/homnath/MeshAssist,4,4,"{""C"": 196258, ""TypeScript"": 19874, ""MATLAB"": 16336, ""Fortran"": 14449, ""Makefile"": 2866}",GNU General Public License v3.0,0,2,[],0,4,43,4,4,43,48,11789548,48,11789548 10.5281/zenodo.883464,10.5281/zenodo.883463,1,software,https://github.com/duffymeg/DEAuthorshipPoll,0,2,"{""HTML"": 4772096, ""R"": 37079}",,0,2,[],0,0,25,0,0,25,25,0,25,0 10.5281/zenodo.883628,10.5281/zenodo.883627,1,software,,0,,,,,,,,0,9,0,0,9,10,0,10,0 10.5281/zenodo.883777,10.5281/zenodo.883776,1,software,,10,,,,,,,,5,48,10,5,48,48,38150,48,38150 10.5281/zenodo.883783,10.5281/zenodo.883782,1,software,,2,,,,,,,,2,65,2,2,65,66,35735550,66,35735550 10.5281/zenodo.883961,10.5281/zenodo.883960,1,software,https://github.com/dinahafez/McEnhancer,0,0,"{""Perl"": 69907, ""Python"": 50956, ""R"": 24414, ""Shell"": 10809}",,1,1,[],1,0,6,0,0,6,6,0,6,0 10.5281/zenodo.884071,10.5281/zenodo.884071,1,software,https://github.com/QEF/SternheimerGW,5,0,"{""Fortran"": 872213, ""TeX"": 93745, ""Makefile"": 14281, ""Awk"": 14118, ""Python"": 12851, ""Shell"": 10924}",GNU General Public License v3.0,5,7,"[first-principles, many-body-perturbation-theory, solid-state-physics, linear-response, physics, computational-physics]",5,4,86,8,5,142,155,71911934,89,44934520 10.5281/zenodo.884076,10.5281/zenodo.884075,1,publication,,24,,,,,,,,21,66,24,21,66,67,10965384,67,10965384 10.5281/zenodo.884113,10.5281/zenodo.884112,1,publication,,0,,,,,,,,0,10,0,0,10,10,0,10,0 10.5281/zenodo.884490,10.5281/zenodo.884489,1,software,https://github.com/FlanFlanagan/xsgen,2,0,"{""Python"": 1017230, ""Jupyter Notebook"": 147107}",,0,1,[],0,2,10,2,2,10,10,1418376,10,1418376 10.5281/zenodo.885000,10.5281/zenodo.884999,1,software,https://github.com/ComputationalRadiationPhysics/clara2,1,7,"{""C++"": 112159, ""Makefile"": 4666, ""C"": 4179, ""Shell"": 3809}",GNU General Public License v3.0,6,7,"[physics, radiation]",6,1,33,1,1,33,37,75434,37,75434 10.5281/zenodo.885250,10.5281/zenodo.885249,1,software,https://github.com/DTU-ELMA/Optimal-Allocation-of-HVDC-Interconnections,2,0,{},GNU General Public License v3.0,0,4,[],0,2,32,2,2,32,33,120416,33,120416 10.5281/zenodo.885572,10.5281/zenodo.885571,1,publication,,62,,,,,,,,59,168,62,59,168,170,134895880,170,134895880 10.5281/zenodo.886174,10.5281/zenodo.839865,1,software,https://github.com/sherrillmix/bonobo,0,0,"{""CSS"": 16040, 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10.5281/zenodo.886618,10.5281/zenodo.886617,1,software,https://github.com/loli/medpy,2,73,"{""Python"": 781555, ""Jupyter Notebook"": 375886, ""C++"": 57609, ""CMake"": 591}",GNU General Public License v3.0,186,15,"[medical, python, medpy, image-processing, machine-learning, feature-extraction, graph-cut, magnetic-resonance-imaging, nifti-format, itk, simpleitk, mha, mhd, dicom, 4d, 3d, 2d, image-classification, image-segmentation, computed-tomography]",186,1,10,13,9,113,130,51710140,10,2417828 10.5281/zenodo.886621,10.5281/zenodo.592766,1,software,https://github.com/UV-CDAT/uvcdat,0,55,"{""Fortran"": 2711721, ""Python"": 2397503, ""CMake"": 530046, ""C"": 386664, ""M4"": 37485, ""Shell"": 25400, ""Makefile"": 16739, ""CSS"": 13796, ""HTML"": 7746, ""C++"": 2067, ""Dockerfile"": 1201, ""Ruby"": 965, ""sed"": 731, ""Objective-C"": 216}",Other,123,33,[],123,0,44,17,14,666,719,866075540,46,0 10.5281/zenodo.886630,10.5281/zenodo.886629,1,software,https://github.com/bmorris3/arces_hk,0,0,"{""Jupyter Notebook"": 320541, ""Python"": 81332}",MIT License,1,2,"[astronomy, spectroscopy]",1,0,13,0,0,13,13,0,13,0 10.5281/zenodo.886678,10.5281/zenodo.831905,1,dataset,,1,,,,,,,,1,11,4,4,27,34,16600,11,4945 10.5281/zenodo.887089,10.5281/zenodo.887088,1,publication,,727,,,,,,,,678,1139,727,678,1139,1283,580210703,1283,580210703 10.5281/zenodo.887316,10.5281/zenodo.596853,1,software,https://github.com/roschkoenig/Dynamics_Matrices,6,1,"{""MATLAB"": 1551831, ""HTML"": 1150221, ""CSS"": 5403}",,3,2,"[epilepsy, eeg, network-dynamics, dynamics-measures, network, dynamics-matrices, clustering, eeg-segment]",3,6,35,10,10,75,84,92244180,39,55488402 10.5281/zenodo.887386,10.5281/zenodo.887385,1,software,https://github.com/JEFworks/liger,0,5,"{""R"": 15656, ""C++"": 4779}",GNU General Public License v3.0,32,6,"[bioinformatics, gsea, enrichment, rstats, gene-sets, pathway-enrichment-analysis, cran]",32,0,122,0,0,122,127,0,127,0 10.5281/zenodo.888966,10.5281/zenodo.888965,1,software,https://github.com/hefebe/AS-Parallel-Serial,1,0,"{""MATLAB"": 10304}",MIT License,0,0,[],0,1,9,1,1,9,9,75772,9,75772 10.5281/zenodo.888988,10.5281/zenodo.888988,1,software,https://github.com/weecology/bbs-forecasting,10,7,"{""Jupyter Notebook"": 7811286, ""R"": 98533, ""TeX"": 33259, ""Python"": 2574, ""Shell"": 976, ""Stan"": 943}",MIT License,6,6,[],6,9,125,12,11,146,161,158268324,132,135160830 10.5281/zenodo.889210,10.5281/zenodo.889209,1,publication,,9,,,,,,,,9,51,9,9,51,51,4204800,51,4204800 10.5281/zenodo.889304,10.5281/zenodo.889303,1,publication,,22,,,,,,,,21,99,22,21,99,100,26261290,100,26261290 10.5281/zenodo.889383,10.5281/zenodo.889382,1,publication,,5,,,,,,,,4,36,5,4,36,36,2035280,36,2035280 10.5281/zenodo.889669,10.5281/zenodo.889668,1,software,https://github.com/carichte/pyasf,2,0,"{""Python"": 183312, ""Jupyter Notebook"": 77554, ""TeX"": 71635, ""Batchfile"": 95}",GNU General Public License v3.0,0,2,[],0,2,23,2,2,23,23,1293042,23,1293042 10.5281/zenodo.889714,10.5281/zenodo.889713,1,software,https://github.com/pcm-ca/vegas-lattice-rs,2,0,"{""Rust"": 31754}",MIT License,1,1,"[lattice, physics, material-science, rust, vegas-lattice-rs]",1,1,16,7,2,47,70,431168,17,121152 10.5281/zenodo.889893,10.5281/zenodo.889892,1,software,https://github.com/jstagge/paleoAPR,1,0,"{""R"": 33017}",MIT License,2,0,"[streamflow, paleoclimate, tree-ring-chronologies, r, hydrology, reconstruction]",2,1,7,1,1,7,7,21049,7,21049 10.5281/zenodo.889971,10.5281/zenodo.889971,1,software,https://github.com/JuliaGraphs/LightGraphs.jl,7,116,"{""Julia"": 684924, ""TeX"": 332}",Other,313,31,"[julia, graph, lightgraphs, graph-theory, graph-generation, graph-analytics, graph-algorithms]",313,4,164,23,6,236,278,9856986,182,3195598 10.5281/zenodo.890269,10.5281/zenodo.597499,1,software,https://github.com/FowlerLab/Enrich2,0,3,"{""Python"": 343561}",GNU General Public License v3.0,17,6,[],17,0,14,0,0,35,35,0,14,0 10.5281/zenodo.890619,10.5281/zenodo.890618,1,dataset,,13,,,,,,,,11,22,13,11,22,23,14439321,23,14439321 10.5281/zenodo.891316,10.5281/zenodo.890995,1,dataset,,0,,,,,,,,0,11,0,0,19,23,0,13,0 10.5281/zenodo.891418,10.5281/zenodo.846907,1,software,https://github.com/jesselansdown/Gurobify,0,0,"{""GAP"": 44601, ""C"": 39602, ""M4"": 7367, ""Makefile"": 943, ""Shell"": 236}",Mozilla Public License 2.0,1,1,[],1,0,6,4,4,25,39,2732400,6,0 10.5281/zenodo.892384,10.5281/zenodo.593800,1,software,https://github.com/NCBI-Hackathons/PubRunner,0,7,"{""JavaScript"": 49674, ""Python"": 20288, ""CSS"": 13642, ""HTML"": 12236, ""PHP"": 9128, ""Shell"": 2284, ""R"": 1889}",MIT License,12,10,[],12,0,25,0,0,67,68,0,25,0 10.5281/zenodo.893462,10.5281/zenodo.893461,1,publication,,29,,,,,,,,29,24,29,29,24,26,169074843,26,169074843 10.5281/zenodo.893499,10.5281/zenodo.893498,1,software,https://github.com/erickpeirson/jhb-data,4,0,{},,0,1,"[data, topic-modeling, history-of-biology, named-entity-recognition, geolocation]",0,1,9,4,1,9,10,220574320,10,220574320 10.5281/zenodo.893859,10.5281/zenodo.851735,1,software,https://github.com/sydneycytometry/tSNEplots,4,1,"{""R"": 21516}",,2,1,[],2,3,65,10,5,75,76,14627856,65,5844480 10.5281/zenodo.894179,10.5281/zenodo.894178,1,software,https://github.com/gprMax/iwagpr2017-model,5,3,"{""MATLAB"": 2637}",,6,3,[],6,5,25,5,5,25,25,1333376390,25,1333376390 10.5281/zenodo.894275,10.5281/zenodo.894274,1,dataset,https://github.com/Lab513/CyberSwitch,1,3,"{""MATLAB"": 219850}",,2,3,"[cybergenetics, synthetic-biology, control]",2,1,52,1,1,52,56,15209857,56,15209857 10.5281/zenodo.894344,10.5281/zenodo.894343,1,software,https://github.com/statnmap/SDMSelect,10,2,"{""R"": 235869}",GNU General Public License v3.0,5,0,"[r, rstat]",5,9,93,17,12,102,131,61694197,105,37051590 10.5281/zenodo.894888,10.5281/zenodo.894887,1,software,https://github.com/laurenmcphillips/TextAnalysis,3,0,"{""R"": 7796}",MIT 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