Package Help

Provides an overview of key functions and classes

Bridge light and EM flybrain datasets

Fetching and searching neurons

Fetch and transform neurons or NBLAST them

Fetch neurons from FAFB catmaid server, transforming them as appropriate

NBLAST EM tracing against flycircuit (or other databases of) neurons

Working with neuron structures

Provides an overview of key functions and classes

Return indices of points in a neuron distal to a given node

Stitch two neurons together at their closest endpoints

Stitch multiple fragments into single neuron using nearest endpoints

Interacting with CATMAID server

Open FAFB CATMAID in browser at a given XYZ location

Summarising tracer contributions

Summarise tracer contributions / suggest authorship for set of neurons

Support functions

Functions intended primarily for developer use

Convert coordinates between different FAFB assemblies

Thin plate spline registrations via nat::xform and friends

Data

Data objects

Sample EM tracings (homologous pair of neurons wrapping around lateral horn)

ELM Landmarks created by Bock & Saalfeld groups at Janelia

templatebrain for assembled FAFB full adult female brain EM volume

FAFB13 brain and neuropil surface objects