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S

s - Variable in class nl.esciencecenter.octopus.engine.util.old.InputForwarder
 
Sandbox - Class in nl.esciencecenter.octopus.engine.jobs
 
Sandbox(JobDescription, OctopusEngine, Path) - Constructor for class nl.esciencecenter.octopus.engine.jobs.Sandbox
 
sandboxID - Variable in class nl.esciencecenter.octopus.engine.jobs.Sandbox
 
schedule(Runnable, long, long) - Static method in class nl.esciencecenter.octopus.engine.util.old.ScheduledExecutor
Creates and executes a periodic action that becomes enabled first after the given initial delay, and subsequently with the given delay between the termination of one execution and the commencement of the next.
schedule(Runnable, long) - Static method in class nl.esciencecenter.octopus.engine.util.old.ScheduledExecutor
Creates and executes a delayed action that becomes enabled first after the given delay.
ScheduledExecutor - Class in nl.esciencecenter.octopus.engine.util.old
Simplified interface to a single ScheduledThreadPoolExecutor, to be used for f.i.
ScheduledExecutor(int) - Constructor for class nl.esciencecenter.octopus.engine.util.old.ScheduledExecutor
 
scheduledExecutor - Static variable in class nl.esciencecenter.octopus.engine.util.old.ScheduledExecutor
 
ScheduledExecutor.MyThreadFactory - Class in nl.esciencecenter.octopus.engine.util.old
 
ScheduledExecutor.MyThreadFactory() - Constructor for class nl.esciencecenter.octopus.engine.util.old.ScheduledExecutor.MyThreadFactory
 
Scheduler - Interface in nl.esciencecenter.octopus.jobs
 
serialVersionUID - Static variable in class nl.esciencecenter.octopus.engine.files.PathCpi
 
serialVersionUID - Static variable in exception nl.esciencecenter.octopus.exceptions.AttributeNotSupportedException
 
serialVersionUID - Static variable in exception nl.esciencecenter.octopus.exceptions.BadParameterException
 
serialVersionUID - Static variable in exception nl.esciencecenter.octopus.exceptions.CommandNotFoundException
 
serialVersionUID - Static variable in exception nl.esciencecenter.octopus.exceptions.CouldNotInitializeCredentialException
 
serialVersionUID - Static variable in exception nl.esciencecenter.octopus.exceptions.CredentialExpiredException
 
serialVersionUID - Static variable in exception nl.esciencecenter.octopus.exceptions.DeployRuntimeException
 
serialVersionUID - Static variable in exception nl.esciencecenter.octopus.exceptions.DirectoryIteratorException
 
serialVersionUID - Static variable in exception nl.esciencecenter.octopus.exceptions.DirectoryNotEmptyException
 
serialVersionUID - Static variable in exception nl.esciencecenter.octopus.exceptions.FileAlreadyExistsException
 
serialVersionUID - Static variable in exception nl.esciencecenter.octopus.exceptions.FilePoststageException
 
serialVersionUID - Static variable in exception nl.esciencecenter.octopus.exceptions.FilePrestageException
 
serialVersionUID - Static variable in exception nl.esciencecenter.octopus.exceptions.InvalidUsernameOrPasswordException
 
serialVersionUID - Static variable in exception nl.esciencecenter.octopus.exceptions.NoSuchFileException
 
serialVersionUID - Static variable in exception nl.esciencecenter.octopus.exceptions.OctopusException
 
serialVersionUID - Static variable in exception nl.esciencecenter.octopus.exceptions.UnsupportedOperationException
 
serialVersionUID - Static variable in class nl.esciencecenter.octopus.ImmutableTypedProperties
 
setAcl(Path, List<AclEntry>) - Method in interface nl.esciencecenter.octopus.engine.files.FilesAdaptor
Updates (replace) the access control list.
setAcl(Path, List<AclEntry>) - Method in class nl.esciencecenter.octopus.engine.files.FilesEngine
 
setAcl(Path, List<AclEntry>) - Method in interface nl.esciencecenter.octopus.files.Files
Updates (replace) the access control list.
setArguments(String...) - Method in class nl.esciencecenter.octopus.jobs.JavaJobDescription
This method should not be used.
setArguments(String...) - Method in class nl.esciencecenter.octopus.jobs.JobDescription
Sets the arguments of the executable.
setBytes(ByteBuffer) - Method in class nl.esciencecenter.octopus.engine.loader.JarFsFile
 
setCertfile(URI) - Method in class nl.esciencecenter.octopus.security.CertificateCredential
Set the location of the certificate file.
setDefaultCredentials(Credentials) - Method in class nl.esciencecenter.octopus.engine.OctopusEngine
 
setDefaultCredentials(Credentials) - Method in interface nl.esciencecenter.octopus.Octopus
 
setDefaultProperties(Properties) - Method in class nl.esciencecenter.octopus.engine.OctopusEngine
 
setDefaultProperties(Properties) - Method in interface nl.esciencecenter.octopus.Octopus
 
setDeleteSandbox(boolean) - Method in class nl.esciencecenter.octopus.jobs.JobDescription
 
setEnvironment(Map<String, String>) - Method in class nl.esciencecenter.octopus.jobs.JobDescription
Sets the environment of the executable.
setError(Exception) - Method in class nl.esciencecenter.octopus.engine.jobs.JobCpi
 
setExecutable(String) - Method in class nl.esciencecenter.octopus.jobs.JobDescription
Sets the path to the executable.
setFileTimes(Path, long, long, long) - Method in interface nl.esciencecenter.octopus.engine.files.FilesAdaptor
Updates a file's last modified, last access, and create time attribute.
setFileTimes(Path, long, long, long) - Method in class nl.esciencecenter.octopus.engine.files.FilesEngine
 
setFileTimes(Path, long, long, long) - Method in interface nl.esciencecenter.octopus.files.Files
Updates a file's last modified, last access, and create time attribute.
setFinished() - Method in class nl.esciencecenter.octopus.engine.util.OutputReader
 
setFlags(AclEntryFlag...) - Method in class nl.esciencecenter.octopus.files.AclEntry.Builder
Sets the flags component of this builder.
setFlags(Set<AclEntryFlag>) - Method in class nl.esciencecenter.octopus.files.AclEntry.Builder
Sets the flags component of this builder.
setHost(String) - Method in class nl.esciencecenter.octopus.security.ProxyCredential
Sets the host of the MyProxy server.
setJavaArguments(String...) - Method in class nl.esciencecenter.octopus.jobs.JavaJobDescription
Sets the arguments of the java main class.
setJavaClassPath(String) - Method in class nl.esciencecenter.octopus.jobs.JavaJobDescription
Sets the java class path.
setJavaMain(String) - Method in class nl.esciencecenter.octopus.jobs.JavaJobDescription
Sets the main class.
setJavaOptions(String...) - Method in class nl.esciencecenter.octopus.jobs.JavaJobDescription
Sets the jvm options.
setJavaSystemProperties(Map<String, String>) - Method in class nl.esciencecenter.octopus.jobs.JavaJobDescription
Sets the system properties.
setKeyfile(URI) - Method in class nl.esciencecenter.octopus.security.CertificateCredential
Sets the location of the keyfile associated with the context.
setManifest(Manifest) - Method in class nl.esciencecenter.octopus.engine.loader.JarFsFile
 
setMaxTime(int) - Method in class nl.esciencecenter.octopus.jobs.JobDescription
 
setNodeCount(int) - Method in class nl.esciencecenter.octopus.jobs.JobDescription
Set the number of resources, which is the total number of resources where the number of processes should be distributed on.
setOfflineMode(boolean) - Method in class nl.esciencecenter.octopus.jobs.JobDescription
 
setOwner(Path, String, String) - Method in interface nl.esciencecenter.octopus.engine.files.FilesAdaptor
Updates the file owner and group.
setOwner(Path, String, String) - Method in class nl.esciencecenter.octopus.engine.files.FilesEngine
 
setOwner(Path, String, String) - Method in interface nl.esciencecenter.octopus.files.Files
Updates the file owner and group.
setPassword(String) - Method in class nl.esciencecenter.octopus.security.Credential
Sets the password.
setPermissions(AclEntryPermission...) - Method in class nl.esciencecenter.octopus.files.AclEntry.Builder
Sets the permissions component of this builder.
setPermissions(Set<AclEntryPermission>) - Method in class nl.esciencecenter.octopus.files.AclEntry.Builder
Sets the permissions component of this builder.
setPort(int) - Method in class nl.esciencecenter.octopus.security.ProxyCredential
Sets the port of the MyProxy server.
setPosixFilePermissions(Path, Set<PosixFilePermission>) - Method in interface nl.esciencecenter.octopus.engine.files.FilesAdaptor
Sets a file's POSIX permissions.
setPosixFilePermissions(Path, Set<PosixFilePermission>) - Method in class nl.esciencecenter.octopus.engine.files.FilesEngine
 
setPosixFilePermissions(Path, Set<PosixFilePermission>) - Method in interface nl.esciencecenter.octopus.files.Files
Sets a file's POSIX permissions.
setPostStagedFiles(Path...) - Method in class nl.esciencecenter.octopus.jobs.JobDescription
Sets the post staged file set.
setPreStagedFiles(Path...) - Method in class nl.esciencecenter.octopus.jobs.JobDescription
Sets the pre staged file set.
setPrincipal(String) - Method in class nl.esciencecenter.octopus.files.AclEntry.Builder
Sets the principal component of this builder.
setPrivateKeySlot(int) - Method in class nl.esciencecenter.octopus.security.CertificateCredential
Sets the private key slot.
setProcessesPerNode(int) - Method in class nl.esciencecenter.octopus.jobs.JobDescription
Get the number of processes started on each node.
setProperty(String, String) - Method in class nl.esciencecenter.octopus.ImmutableTypedProperties
 
setQueueName(String) - Method in class nl.esciencecenter.octopus.jobs.JobDescription
 
setStderr(Path) - Method in class nl.esciencecenter.octopus.jobs.JobDescription
Sets the stderr Path.
setStdin(String, InputStream) - Method in class nl.esciencecenter.octopus.engine.util.old.ProcessBundle
 
setStdin(Path) - Method in class nl.esciencecenter.octopus.jobs.JobDescription
Sets the Path where stdin is redirected from.
setStdout(Path) - Method in class nl.esciencecenter.octopus.jobs.JobDescription
Sets the stdout Path.
setType(AclEntryType) - Method in class nl.esciencecenter.octopus.files.AclEntry.Builder
Sets the type component of this builder.
setUsername(String) - Method in class nl.esciencecenter.octopus.security.Credential
Sets the user name.
setWipeSandbox(boolean) - Method in class nl.esciencecenter.octopus.jobs.JobDescription
Sets the wipe sandbox flag.
Shells - Class in nl.esciencecenter.octopus.engine.util.old
 
Shells() - Constructor for class nl.esciencecenter.octopus.engine.util.old.Shells
 
shutdown() - Method in class nl.esciencecenter.octopus.engine.util.old.ScheduledExecutor
 
size() - Method in interface nl.esciencecenter.octopus.files.FileAttributes
 
source - Variable in class nl.esciencecenter.octopus.engine.util.old.InputForwarder
 
source - Variable in class nl.esciencecenter.octopus.engine.util.OutputReader
 
startBundle() - Method in class nl.esciencecenter.octopus.engine.util.old.ProcessBundle
 
startProcess() - Method in class nl.esciencecenter.octopus.engine.util.old.ProcessRunner
 
startsWith(Path) - Method in class nl.esciencecenter.octopus.engine.files.PathCpi
 
startsWith(String) - Method in class nl.esciencecenter.octopus.engine.files.PathCpi
 
startsWith(Path) - Method in interface nl.esciencecenter.octopus.files.Path
 
startsWith(String) - Method in interface nl.esciencecenter.octopus.files.Path
 
startsWith(String, String[]) - Static method in class nl.esciencecenter.octopus.ImmutableTypedProperties
Returns true if the given string starts with one of the given prefixes.
state - Variable in class nl.esciencecenter.octopus.engine.jobs.JobCpi
 
stateUpdated(Job, JobState) - Method in interface nl.esciencecenter.octopus.jobs.JobStateListener
 
stderr - Variable in class nl.esciencecenter.octopus.engine.util.old.ProcessBundle
 
stderr - Variable in class nl.esciencecenter.octopus.jobs.JobDescription
 
stdin - Variable in class nl.esciencecenter.octopus.engine.util.old.ProcessBundle
 
stdin - Variable in class nl.esciencecenter.octopus.jobs.JobDescription
 
stdout - Variable in class nl.esciencecenter.octopus.engine.util.old.ProcessBundle
 
stdout - Variable in class nl.esciencecenter.octopus.jobs.JobDescription
 
stream - Variable in class nl.esciencecenter.octopus.engine.util.old.ProcessBundle.Reader
 
StreamForwarder - Class in nl.esciencecenter.octopus.engine.util.old
 
StreamForwarder(InputStream, OutputStream) - Constructor for class nl.esciencecenter.octopus.engine.util.old.StreamForwarder
 
StreamForwarder(InputStream, OutputStream, String) - Constructor for class nl.esciencecenter.octopus.engine.util.old.StreamForwarder
 
StreamForwarder - Class in nl.esciencecenter.octopus.engine.util
Simple stream forwarder.
StreamForwarder(InputStream, OutputStream) - Constructor for class nl.esciencecenter.octopus.engine.util.StreamForwarder
 
streams - Variable in class nl.esciencecenter.octopus.engine.util.old.ProcessBundle.OutputStreamSplitter
 
submitJob(JobDescription) - Method in interface nl.esciencecenter.octopus.jobs.Scheduler
 
submitJob(JobDescription, JobStateListener) - Method in interface nl.esciencecenter.octopus.jobs.Scheduler
 
subpath(int, int) - Method in class nl.esciencecenter.octopus.engine.files.PathCpi
 
subpath(int, int) - Method in interface nl.esciencecenter.octopus.files.Path
 
supports(String) - Method in interface nl.esciencecenter.octopus.engine.Adaptor
Returns if this adaptor supports the given scheme.
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