Search for clonotypes in external databases

lookup_clonotypes(.data, .db, .seq.col = NA, .v.col = NA,
  .db.name = NA)

Arguments

.data

Input dataset.

.db

Either data frame, data table or any other object with columns, or a path to the database file if ".db.name" is provided.

.seq.col

Name of the CDR3 sequence column in the database.

.v.col

Provide FALSE to match only by ".seq.col" if ".db.name" is provided.

.db.name

Either NA or the name of the external database. Provide one of the supported database names to skip specifying column names. Supported databases:

- "mcpas" - McPAS-TCR database, http://friedmanlab.weizmann.ac.il/McPAS-TCR/

- "vdjdb" - VDJDB database, https://vdjdb.cdr3.net/search