Visualise matrices with overlap values or gene usage distances among samples. For details see links below.
# S3 method for immunr_ov_matrix vis(.data, .plot = c("heatmap", "heatmap2", "circos", "radar"), ...)
.data | Output from repOverlap or geneUsageAnalysis. |
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.plot | A string specifying the plot type: - "heatmap" for heatmaps using vis_heatmap; - "heatmap2" for heatmaps using vis_heatmap2; - "circos" for circos plots using vis_circos; - "radar" for polar area plots using vis_radar. |
... | Other arguments are passed through to the underlying plotting function: - "heatmap" - passes arguments to vis_heatmap; - "heatmap2" - passes arguments to vis_heatmap2 and heatmap from the "heatmap3" package; - "circos" - passes arguments to vis_circos and chordDiagram from the "circlize" package; - "radar"- passes arguments to vis_radar. |