Visualise public clonotype frequencies.
vis_public_frequencies(.data, .by = NA, .meta = NA, .type = c("boxplot", "none", "mean"))
.data | Public repertoire - an output from the pubRep function. |
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.by | Pass NA if you want to plot samples without grouping. You can pass a character vector with one or several column names from ".meta" to group your data before plotting. In this case you should provide ".meta". You can pass a character vector that exactly matches the number of samples in your data, each value should correspond to a sample's property. It will be used to group data based on the values provided. Note that in this case you should pass NA to ".meta". |
.meta | A metadata object. An R dataframe with sample names and their properties, such as age, serostatus or hla. |
.type | Character. Either "boxplot" for plotting distributions of frequencies, "none" for plotting everything, or "mean" for plotting average values only. |