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part_func_co.h
Go to the documentation of this file.
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#ifndef __VIENNA_RNA_PACKAGE_PART_FUNC_CO_H__
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#define __VIENNA_RNA_PACKAGE_PART_FUNC_CO_H__
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#include "
data_structures.h
"
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#ifdef __GNUC__
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#define DEPRECATED(func) func __attribute__ ((deprecated))
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#else
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#define DEPRECATED(func) func
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#endif
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extern
int
mirnatog
;
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extern
double
F_monomer
[2];
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cofoldF
co_pf_fold
(
char
*sequence,
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char
*structure);
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cofoldF
co_pf_fold_par
(
char
*sequence,
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char
*structure,
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pf_paramT
*parameters,
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int
calculate_bppm,
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int
is_constrained);
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FLT_OR_DBL *
export_co_bppm
(
void
);
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void
free_co_pf_arrays
(
void
);
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void
update_co_pf_params
(
int
length);
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void
update_co_pf_params_par
(
int
length,
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pf_paramT
*parameters);
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void
compute_probabilities
(
double
FAB,
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double
FEA,
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double
FEB,
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struct
plist
*prAB,
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struct
plist
*prA,
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struct
plist
*prB,
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int
Alength);
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ConcEnt
*
get_concentrations
(
double
FEAB,
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double
FEAA,
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double
FEBB,
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double
FEA,
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double
FEB,
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double
*startconc);
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/*
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#################################################
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# DEPRECATED FUNCTIONS #
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#################################################
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*/
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DEPRECATED(
plist
*
get_plist
(
struct
plist
*pl,
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int
length,
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double
cut_off));
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DEPRECATED(
void
init_co_pf_fold
(
int
length));
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#endif
H
part_func_co.h
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