RNAlib-2.1.9
part_func_up.h
Go to the documentation of this file.
1 #ifndef __VIENNA_RNA_PACKAGE_PART_FUNC_UP_H__
2 #define __VIENNA_RNA_PACKAGE_PART_FUNC_UP_H__
3 
4 #include "data_structures.h"
5 
6 #define RNA_UP_MODE_1 1U
7 #define RNA_UP_MODE_2 2U
8 #define RNA_UP_MODE_3 4U
9 
55 pu_contrib *pf_unstru(char *sequence,
56  int max_w);
57 
100 interact *pf_interact(const char *s1,
101  const char *s2,
102  pu_contrib *p_c,
103  pu_contrib *p_c2,
104  int max_w,
105  char *cstruc,
106  int incr3,
107  int incr5);
108 
112 void free_interact(interact *pin);
113 
117 int Up_plot(pu_contrib *p_c,
118  pu_contrib *p_c_sh,
119  interact *pint,
120  char *ofile,
121  int **unpaired_values,
122  char *select_contrib,
123  char *head,
124  unsigned int mode);
125 
129 pu_contrib *get_pu_contrib_struct( unsigned int n,
130  unsigned int w);
131 
136 
141 #endif