Preview

vitkl-ParetoTI-80788d8
- .DS_Store
  
  14.3 kB
- .Rbuildignore
  
  28 Bytes
- .gitignore
  
  76 Bytes
- DESCRIPTION
  
  2.3 kB
- LICENSE
  
  11.4 kB
- NAMESPACE
  
  1.6 kB
- ParetoTI.Rproj
  
  356 Bytes
- R
  - .DS_Store
    
    6.1 kB
  - align_arc.R
    
    3.1 kB
  - annotate_archetypes.R
    
    2.3 kB
  - arc_data_table.R
    
    3.1 kB
  - arch_dist.R
    
    1.9 kB
  - find_decreasing.R
    
    26.3 kB
  - find_set_activity.R
    
    8.9 kB
  - fit_pch.R
    
    59.3 kB
  - gam_deriv.R
    
    8.3 kB
  - generate_arc.R
    
    2.8 kB
  - geo_sketch.R
    
    4.0 kB
  - logistic_model.R
    
    14.2 kB
  - logistic_reg_vert.R
    
    8.4 kB
  - map_gene_annot.R
    
    2.8 kB
  - map_go_annot.R
    
    21.8 kB
  - plot_arc.R
    
    19.0 kB
  - plot_arc_var.R
    
    4.4 kB
  - plot_arch_struct.R
    
    5.3 kB
  - plot_gam.R
    
    4.8 kB
  - poisson_regression.R
    
    8.8 kB
  - project.R
    
    9.9 kB
  - rand_var.R
    
    1.8 kB
  - utility_functions.R
    
    4.6 kB
  - zzz.R
    
    1.2 kB
- README.md
  
  11.6 kB
- docs
  - LICENSE-text.html
    
    15.9 kB
  - articles
    - Comparison_to_kmeans.html
      
      21.3 kB
    - Comparison_to_kmeans_files
      - figure-html
        
        arc_vs_kmeans-1.png
        
        192.3 kB
        
        sim-1.png
        
        103.9 kB
        
        unnamed-chunk-1-1.png
        
        170.7 kB
        
        unnamed-chunk-2-1.png
        
        104.5 kB
        
        unnamed-chunk-2-2.png
        
        111.7 kB
    - Hepatocyte_example.html
      
      1.2 MB
    - Hepatocyte_example_files
      - crosstalk-1.0.0
        
        css
        
        crosstalk.css
        
        784 Bytes
        
        js
        
        crosstalk.js
        
        49.0 kB
        
        crosstalk.js.map
        
        54.4 kB
        
        crosstalk.min.js
        
        19.2 kB
        
        crosstalk.min.js.map
        
        50.3 kB
      - figure-html
        
        k_poly-1.png
        
        75.2 kB
        
        k_poly-2.png
        
        77.7 kB
        
        k_poly-3.png
        
        76.4 kB
        
        k_poly-4.png
        
        80.8 kB
        
        unnamed-chunk-1-1.png
        
        671.3 kB
        
        unnamed-chunk-3-1.png
        
        53.0 kB
      - htmlwidgets-1.3
        
        htmlwidgets.js
        
        31.0 kB
      - jquery-1.11.3
        
        jquery-AUTHORS.txt
        
        8.0 kB
        
        jquery.js
        
        284.4 kB
        
        jquery.min.js
        
        96.0 kB
        
        jquery.min.map
        
        142.0 kB
      - plotly-binding-4.8.0
        
        plotly.js
        
        32.7 kB
      - plotly-binding-4.9.0
        
        plotly.js
        
        33.4 kB
      - plotly-htmlwidgets-css-1.39.2
        
        plotly-htmlwidgets.css
        
        173 Bytes
      - plotly-htmlwidgets-css-1.46.1
        
        plotly-htmlwidgets.css
        
        173 Bytes
      - plotly-main-1.39.2
        
        plotly-latest.min.js
        
        2.8 MB
      - plotly-main-1.46.1
        
        plotly-latest.min.js
        
        3.0 MB
      - typedarray-0.1
        
        typedarray.min.js
        
        22.4 kB
    - index.html
      
      5.0 kB
  - authors.html
    
    4.6 kB
  - docsearch.css
    
    11.8 kB
  - docsearch.js
    
    2.0 kB
  - index.html
    
    27.0 kB
  - link.svg
    
    810 Bytes
  - pkgdown.css
    
    4.1 kB
  - pkgdown.js
    
    3.4 kB
  - pkgdown.yml
    
    154 Bytes
  - reference
    - align_arc.html
      
      10.9 kB
    - annotate_archetypes-1.png
      
      163.6 kB
    - annotate_archetypes.html
      
      10.0 kB
    - arch_dist.html
      
      10.5 kB
    - dot-archLines.html
      
      6.3 kB
    - find_decreasing.html
      
      20.9 kB
    - find_gam_deriv.html
      
      9.8 kB
    - find_set_activity_AUCell.html
      
      11.7 kB
    - fit_logistic_model.html
      
      15.8 kB
    - fit_pch.html
      
      49.9 kB
    - generate_arc.html
      
      11.4 kB
    - geo_sketch.html
      
      9.2 kB
    - hello.html
      
      5.4 kB
    - index.html
      
      12.3 kB
    - install_py_pcha.html
      
      11.1 kB
    - map_gene_annot.html
      
      8.4 kB
    - measure_activity.html
      
      28.1 kB
    - plot_arc-1.png
      
      159.2 kB
    - plot_arc-2.png
      
      101.8 kB
    - plot_arc-3.png
      
      228.8 kB
    - plot_arc-4.png
      
      248.0 kB
    - plot_arc.html
      
      24.5 kB
    - plot_arc_var.html
      
      13.3 kB
    - plot_arch_struct.html
      
      8.9 kB
    - plot_gam.html
      
      8.9 kB
    - predict_vert.html
      
      9.0 kB
    - project.html
      
      8.2 kB
    - project_to_pcs.html
      
      8.8 kB
    - rand_var.html
      
      8.4 kB
- man
  - align_arc.Rd
    
    1.9 kB
  - annotate_archetypes.Rd
    
    1.5 kB
  - arch_dist.Rd
    
    1.4 kB
  - dot-archLines.Rd
    
    542 Bytes
  - find_decreasing.Rd
    
    7.7 kB
  - find_gam_deriv.Rd
    
    1.9 kB
  - find_set_activity_AUCell.Rd
    
    3.2 kB
  - fit_logistic_model.Rd
    
    5.9 kB
  - fit_pch.Rd
    
    18.2 kB
  - generate_arc.Rd
    
    2.0 kB
  - geo_sketch.Rd
    
    2.1 kB
  - hello.Rd
    
    128 Bytes
  - install_py_pcha.Rd
    
    2.7 kB
  - map_gene_annot.Rd
    
    1.7 kB
  - measure_activity.Rd
    
    8.2 kB
  - plot_arc.Rd
    
    6.4 kB
  - plot_arc_var.Rd
    
    2.3 kB
  - plot_arch_struct.Rd
    
    2.3 kB
  - plot_gam.Rd
    
    1.8 kB
  - poisson_regression.Rd
    
    4.4 kB
  - predict_vert.Rd
    
    1.7 kB
  - project_to_pcs.Rd
    
    3.4 kB
  - rand_var.Rd
    
    1.1 kB
- tests.R
  
  18.8 kB
- vignettes
  - Comparison_to_kmeans.Rmd
    
    4.5 kB
  - Hepatocyte_example.Rmd
    
    13.8 kB
  - introduction.Rmd.zip
    
    7.2 kB
  - processed_data
    - .DS_Store
      
      8.2 kB
    - GSE84498
      - GSE84498_experimental_design.txt.gz
        
        14.9 kB
      - GSE84498_umitab.txt.gz
        
        4.4 MB

vitkl/ParetoTI-v0.1.10-beta.1.zip