Peak Calling results from Atkinson SR, Hamesch K et al (2019)	
Methods	"[Extracted from Methods section of referred manuscript] ChIP-seq libraries were prepared from 10 ng of ChIP and input DNAs with the Ovation Ultralow DR Multiplex system (NuGEN). The ChIP-seq libraries were sequenced to 51 base pairs from both ends using the Illumina HiSeq 2000 in the Mayo Clinic Medical Genomics Core. Data were analyzed by the HiChIP pipeline69. Briefly, reads were aligned to the hg19 genome assembly using BWA. Mapped reads were post-processed to remove duplicates and pairs of reads mapping to multiple locations. The MACS2 and Sicer algorithm was used for peak-calling in relation to the input DNA"
	
Variable	Description
ID	De-identifyed sample code
Group	1_CTL = Normal Liver; 2_AH=Alcoholic Hepatitis
Modif	Chromatin Modification Pull down in ChIP-seq experiment
Chr	Chromosome
Peak.Start	Peak Start
Peak.Stop	Peak End
fold.change	Fold Change AH vs CTL
lg10pvalue...	log10 (p value) AH vs CTL
lg10qvalue...	log10 (q value) AH vs CTL
Peak.Length	Peak length
Peak.Center	Peak Center
Gene	Nearest-neighbor annotated gene
Transcript	Nearest-neighbor annotated transcript
Transcript.Start	Transcript Sart
Transcript.Stop	Transcript End
Strand	"Defines the strand. Either ""."" (=no strand) or ""+"" or ""-""."
TSS	Transcription Start Site
Distance.of.Peak.Upstream.TSS	Distance from Peak to TSS (Upstream)
Distance.of.Peak.Downstream.TSS	Distance from Peak to TSS (Downstream)
TTS	Transcription Termination Site
Distance.of.Peak.Upstream.TTS	Distance from Peak to TTS (Upstream)
Distance.of.Peak.Downstream.TTS	Distance from Peak to TTS (Downstream)