Preview

SwissTPH-openmalaria-2024ecf
- .gitignore
  
  331 Bytes
- .gitmodules
  
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- .kdev_include_paths
  
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- .travis.yml
  
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- CMakeLists.txt
  
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- COPYING
  
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- FindBOINC.cmake
  
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- FindGSL.cmake
  
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- FindPython.cmake
  
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- FindXERCESC.cmake
  
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- FindXSD.cmake
  
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- FindZ.cmake
  
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- README.md
  
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- appveyor.yml
  
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- config.doxygen
  
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- contrib
  - CMakeLists.txt
    
    803 Bytes
  - COPYING.LIB
    
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  - FastDelegate_src
    - Demo.cpp
      
      5.7 kB
    - FastDelegate.h
      
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    - FastDelegateBind.h
      
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  - README.txt
    
    953 Bytes
  - R_nmath
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  - cxxtest
    - README
      
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    - TODO
      
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    - Versions
      
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    - cxxtest
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      - GlobalFixture.cpp
        
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      - GlobalFixture.h
        
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      - Root.cpp
        
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    - docs
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    - sample
      - Construct
        
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      - CreatedTest.h
        
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      - DeltaTest.h
        
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      - EnumTraits.h
        
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      - ExceptionTest.h
        
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      - FixtureTest.h
        
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      - Makefile.PL
        
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      - MessageTest.h
        
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      - aborter.tpl
        
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      - file_printer.tpl
        
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      - gui
        
        GreenYellowRed.h
        
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      - mock
        
        Dice.cpp
        
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        Dice.h
        
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        Makefile
        
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        MockStdlib.h
        
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        T
        
        stdlib.h
        
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        TestDice.h
        
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        mock_stdlib.cpp
        
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        real_stdlib.cpp
        
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        roll.cpp
        
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      - msvc
        
        CxxTest_1_Run.dsp
        
        2.7 kB
        
        CxxTest_2_Build.dsp
        
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        CxxTest_3_Generate.dsp
        
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        CxxTest_Workspace.dsw
        
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        FixFiles.bat
        
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        Makefile
        
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        ReadMe.txt
        
        1.1 kB
      - only.tpl
        
        1.0 kB
      - parts
        
        Makefile.unix
        
        663 Bytes
      - winddk
        
        Makefile
        
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        Makefile.inc
        
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        RunTests.tpl
        
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        SOURCES
        
        724 Bytes
      - yes_no_runner.cpp
        
        195 Bytes
  - floating_point_utilities_v3
    - boost
      - math
        
        detail
        
        fp_traits.hpp
        
        17.3 kB
        
        fpclassify.hpp
        
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        nonfinite_num_facets.hpp
        
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        signbit.hpp
        
        2.1 kB
    - boost.css
      
      675 Bytes
    - boost.png
      
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    - index.htm
      
      457 Bytes
    - libs
      - math
        
        doc
        
        fpclassify.htm
        
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        index.htm
        
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        nonfinite_num_facets.htm
        
        19.1 kB
        
        signbit.htm
        
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        test
        
        fpclassify_test.cpp
        
        7.6 kB
        
        nonfinite_num_facets
        
        S_.hpp
        
        1.5 kB
        
        almost_equal.hpp
        
        544 Bytes
        
        archive_test.cpp
        
        7.2 kB
        
        basic_test.cpp
        
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        legacy_test.cpp
        
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        lexical_cast_test.cpp
        
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        signed_zero_test.cpp
        
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        trap_test.cpp
        
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        signbit_test.cpp
        
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        test.cpp
        
        271 Bytes
        
        tools
        
        inspect.cpp
        
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  - gzstream
    - Makefile
      
      3.3 kB
    - README
      
      251 Bytes
    - gzstream.C
      
      5.1 kB
    - gzstream.h
      
      4.6 kB
    - index.html
      
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    - logo.gif
      
      1.7 kB
    - test_gunzip.C
      
      2.8 kB
    - test_gzip.C
      
      2.8 kB
    - version
      
      18 Bytes
- data
  - Molineaux
    - 35casesAsexDensities.txt
      
      96.4 kB
    - read.py
      
      2.6 kB
- doc
  - .gitignore
    
    13 Bytes
  - CMakeLists.txt
    
    1.0 kB
  - changelog.txt
    
    6.3 kB
  - clinical.markdown
    
    9.0 kB
  - coding practices.markdown
    
    2.4 kB
  - extensions
    - tab-deliminated-fields.markdown
      
      2.3 kB
  - init-phases
    - diffs.txt
      
      18.9 kB
    - readme.txt
      
      86 Bytes
    - w2ndOpt
      - output6.txt
        
        648.0 kB
      - outputEmpirical.txt
        
        3.6 kB
      - outputVecTest.txt
        
        7.4 kB
    - wOpt
      - original6.txt
        
        647.7 kB
      - originalEmpirical.txt
        
        3.6 kB
      - originalVecTest.txt
        
        7.4 kB
    - woOpt
      - original6.txt
        
        647.9 kB
      - originalEmpirical.txt
        
        3.6 kB
      - originalVecTest.txt
        
        7.4 kB
  - option-incompatibilities.txt
    
    2.7 kB
  - readme.txt
    
    369 Bytes
  - resource
    - SwissTPH_logo.gif
      
      2.5 kB
    - SwissTPH_logo_gray.gif
      
      19.1 kB
    - finish.sed
      
      476 Bytes
    - header.inc
      
      158 Bytes
    - main.css
      
      1.2 kB
    - metadata.inc
      
      68 Bytes
- gsl
- model
  - CMakeLists.txt
    
    4.0 kB
  - Clinical
    - CM5DayCommon.cpp
      
      8.2 kB
    - CM5DayCommon.h
      
      2.8 kB
    - CMDecisionTree.cpp
      
      21.0 kB
    - CMDecisionTree.h
      
      3.5 kB
    - CaseManagementCommon.cpp
      
      3.1 kB
    - CaseManagementCommon.h
      
      3.0 kB
    - ClinicalModel.cpp
      
      6.3 kB
    - ClinicalModel.h
      
      5.4 kB
    - DecisionTree5Day.cpp
      
      4.7 kB
    - DecisionTree5Day.h
      
      2.1 kB
    - ESCaseManagement.cpp
      
      2.4 kB
    - ESCaseManagement.h
      
      1.9 kB
    - Episode.cpp
      
      4.6 kB
    - Episode.h
      
      5.3 kB
    - EventScheduler.cpp
      
      18.7 kB
    - EventScheduler.h
      
      5.5 kB
    - ImmediateOutcomes.cpp
      
      10.1 kB
    - ImmediateOutcomes.h
      
      2.4 kB
  - Global.h
    
    2.1 kB
  - Host
    - Human.cpp
      
      8.2 kB
    - Human.h
      
      8.0 kB
    - HumanHet.hpp
      
      4.2 kB
    - ImportedInfections.cpp
      
      4.1 kB
    - ImportedInfections.h
      
      2.7 kB
    - InfectionIncidenceModel.cpp
      
      10.9 kB
    - InfectionIncidenceModel.h
      
      5.7 kB
    - NeonatalMortality.cpp
      
      5.5 kB
    - NeonatalMortality.h
      
      1.6 kB
  - Monitoring
    - Continuous.cpp
      
      10.9 kB
    - Continuous.h
      
      3.5 kB
  - Parameters.cpp
    
    2.1 kB
  - Parameters.h
    
    3.7 kB
  - PkPd
    - Drug
      - LSTMDrug.cpp
        
        2.0 kB
      - LSTMDrug.h
        
        4.5 kB
      - LSTMDrugAllele.cpp
        
        2.1 kB
      - LSTMDrugConversion.cpp
        
        13.4 kB
      - LSTMDrugConversion.h
        
        3.5 kB
      - LSTMDrugOneComp.cpp
        
        5.1 kB
      - LSTMDrugOneComp.h
        
        2.2 kB
      - LSTMDrugThreeComp.cpp
        
        10.5 kB
      - LSTMDrugThreeComp.h
        
        3.3 kB
      - LSTMDrugType.cpp
        
        14.6 kB
      - LSTMDrugType.h
        
        7.1 kB
    - LSTMMedicate.h
      
      2.4 kB
    - LSTMModel.cpp
      
      5.9 kB
    - LSTMModel.h
      
      5.8 kB
    - LSTMTreatments.cpp
      
      4.8 kB
    - LSTMTreatments.h
      
      2.0 kB
  - Population.cpp
    
    14.8 kB
  - Population.h
    
    6.2 kB
  - PopulationAgeStructure.cpp
    
    7.9 kB
  - PopulationAgeStructure.h
    
    3.8 kB
  - PopulationStats.cpp
    
    2.1 kB
  - PopulationStats.h
    
    1.6 kB
  - SimTime.h
    
    10.7 kB
  - Simulator.cpp
    
    19.0 kB
  - Simulator.h
    
    2.6 kB
  - Transmission
    - Anopheles
      - AnophelesModel.cpp
        
        17.0 kB
      - AnophelesModel.h
        
        12.0 kB
      - EmergenceModel.cpp
        
        8.0 kB
      - EmergenceModel.h
        
        7.2 kB
      - FixedEmergence.cpp
        
        5.9 kB
      - FixedEmergence.h
        
        4.3 kB
      - LCEmergence.cpp
        
        9.6 kB
      - LCEmergence.h
        
        5.1 kB
      - LifeCycle.cpp
        
        5.4 kB
      - LifeCycle.h
        
        8.5 kB
      - MosqTransmission.cpp
        
        15.0 kB
      - MosqTransmission.h
        
        9.3 kB
      - Nv0DelayFitting.h
        
        4.7 kB
      - PerHost.cpp
        
        1.8 kB
      - PerHost.h
        
        4.2 kB
      - ResourceFitter.cpp
        
        15.4 kB
      - ResourceFitter.h
        
        5.3 kB
      - SimpleMPDEmergence.cpp
        
        9.4 kB
      - SimpleMPDEmergence.h
        
        6.4 kB
    - NonVectorModel.cpp
      
      11.3 kB
    - NonVectorModel.h
      
      4.7 kB
    - PerHost.cpp
      
      6.0 kB
    - PerHost.h
      
      10.3 kB
    - TransmissionModel.cpp
      
      11.0 kB
    - TransmissionModel.h
      
      11.9 kB
    - VectorModel.cpp
      
      18.6 kB
    - VectorModel.h
      
      4.6 kB
  - WithinHost
    - CommonWithinHost.cpp
      
      12.8 kB
    - CommonWithinHost.h
      
      3.2 kB
    - DescriptiveWithinHost.cpp
      
      8.2 kB
    - DescriptiveWithinHost.h
      
      2.7 kB
    - Diagnostic.cpp
      
      8.7 kB
    - Diagnostic.h
      
      3.0 kB
    - Genotypes.cpp
      
      14.1 kB
    - Genotypes.h
      
      3.2 kB
    - Infection
      - CommonInfection.h
        
        3.3 kB
      - DescriptiveIPTInfection.cpp
        
        5.1 kB
      - DescriptiveIPTInfection.h
        
        3.6 kB
      - DescriptiveInfection.cpp
        
        9.5 kB
      - DescriptiveInfection.h
        
        5.0 kB
      - DummyInfection.cpp
        
        2.2 kB
      - DummyInfection.h
        
        1.5 kB
      - EmpiricalInfection.cpp
        
        11.1 kB
      - EmpiricalInfection.h
        
        3.4 kB
      - Infection.cpp
        
        2.7 kB
      - Infection.h
        
        4.5 kB
      - MolineauxInfection.cpp
        
        18.0 kB
      - MolineauxInfection.h
        
        4.0 kB
      - PennyInfection.cpp
        
        13.1 kB
      - PennyInfection.h
        
        3.4 kB
    - Pathogenesis
      - PathogenesisModel.cpp
        
        5.6 kB
      - PathogenesisModel.h
        
        2.9 kB
      - State.h
        
        2.6 kB
      - Submodels.cpp
        
        4.3 kB
      - Submodels.h
        
        2.5 kB
    - Treatments.cpp
      
      3.2 kB
    - Treatments.h
      
      2.9 kB
    - WHFalciparum.cpp
      
      10.1 kB
    - WHFalciparum.h
      
      5.6 kB
    - WHInterface.cpp
      
      4.0 kB
    - WHInterface.h
      
      8.4 kB
    - WHVivax.cpp
      
      25.0 kB
    - WHVivax.h
      
      6.9 kB
  - interventions
    - Deployments.hpp
      
      16.3 kB
    - GVI.cpp
      
      5.6 kB
    - GVI.h
      
      5.1 kB
    - HumanComponents.h
      
      4.5 kB
    - HumanInterventionComponents.hpp
      
      13.3 kB
    - IRS.cpp
      
      11.9 kB
    - IRS.h
      
      8.1 kB
    - ITN.cpp
      
      27.7 kB
    - ITN.h
      
      10.3 kB
    - Interfaces.hpp
      
      6.9 kB
    - InterventionManager.cpp
      
      20.2 kB
    - InterventionManager.hpp
      
      4.3 kB
    - Vaccine.cpp
      
      7.4 kB
    - Vaccine.h
      
      3.3 kB
  - mon
    - AgeGroup.h
      
      2.6 kB
    - OutputMeasures.h
      
      20.9 kB
    - info.h
      
      2.8 kB
    - management.h
      
      2.4 kB
    - misc.cpp
      
      9.8 kB
    - mon.cpp
      
      32.3 kB
    - reporting.h
      
      10.4 kB
  - openMalaria.cpp
    
    4.7 kB
  - util
    - AgeGroupInterpolation.cpp
      
      12.6 kB
    - AgeGroupInterpolation.h
      
      3.1 kB
    - BoincWrapper.cpp
      
      6.1 kB
    - BoincWrapper.h
      
      3.5 kB
    - CommandLine.cpp
      
      14.2 kB
    - CommandLine.h
      
      4.9 kB
    - DecayFunction.cpp
      
      8.3 kB
    - DecayFunction.h
      
      4.6 kB
    - DocumentLoader.cpp
      
      3.6 kB
    - DocumentLoader.h
      
      2.6 kB
    - ModelOptions.cpp
      
      12.0 kB
    - ModelOptions.h
      
      11.3 kB
    - MultidimSolver.h
      
      4.9 kB
    - SimpleDecayingValue.h
      
      3.2 kB
    - SpeciesIndexChecker.cpp
      
      2.3 kB
    - SpeciesIndexChecker.h
      
      1.7 kB
    - StreamValidator.cpp
      
      6.7 kB
    - StreamValidator.h
      
      5.0 kB
    - Uninitialised.h
      
      2.1 kB
    - checkpoint.cpp
      
      10.2 kB
    - checkpoint.h
      
      5.9 kB
    - checkpoint_containers.h
      
      4.4 kB
    - errors.cpp
      
      5.5 kB
    - errors.h
      
      8.1 kB
    - misc.cpp
      
      9.8 kB
    - mod.h
      
      1.9 kB
    - random.cpp
      
      8.7 kB
    - random.h
      
      3.6 kB
    - sampler.cpp
      
      3.1 kB
    - sampler.h
      
      6.0 kB
    - timeConversions.h
      
      3.5 kB
    - timer.cpp
      
      2.7 kB
    - timer.h
      
      1.1 kB
    - vecDay.h
      
      5.4 kB
    - vectors.cpp
      
      5.3 kB
    - vectors.h
      
      5.8 kB
    - version.h.in
      
      180 Bytes
- schema
  - CMakeLists.txt
    
    1.9 kB
  - demography.xsd
    
    3.6 kB
  - entomology.xsd
    
    31.9 kB
  - healthSystem.xsd
    
    52.5 kB
  - interventions.xsd
    
    77.5 kB
  - monitoring.xsd
    
    16.6 kB
  - pharmacology.xsd
    
    24.8 kB
  - policy.md
    
    1.3 kB
  - scenario.xsd
    
    26.6 kB
  - scenario_10.xsd
    
    57.8 kB
  - scenario_11.xsd
    
    56.3 kB
  - scenario_12.xsd
    
    56.8 kB
  - scenario_13.xsd
    
    58.3 kB
  - scenario_14.xsd
    
    55.9 kB
  - scenario_15.xsd
    
    56.6 kB
  - scenario_16.xsd
    
    57.7 kB
  - scenario_17.xsd
    
    58.5 kB
  - scenario_18.xsd
    
    81.3 kB
  - scenario_19.xsd
    
    83.0 kB
  - scenario_2.xsd
    
    44.7 kB
  - scenario_20.xsd
    
    83.8 kB
  - scenario_21.xsd
    
    87.2 kB
  - scenario_22.xsd
    
    89.9 kB
  - scenario_23.xsd
    
    91.3 kB
  - scenario_24.xsd
    
    95.2 kB
  - scenario_25.xsd
    
    103.0 kB
  - scenario_26.xsd
    
    112.1 kB
  - scenario_27.xsd
    
    112.2 kB
  - scenario_28.xsd
    
    126.0 kB
  - scenario_29.xsd
    
    141.3 kB
  - scenario_3.xsd
    
    43.5 kB
  - scenario_30.xsd
    
    168.7 kB
  - scenario_30_3.xsd
    
    176.0 kB
  - scenario_31.xsd
    
    179.6 kB
  - scenario_32.xsd
    
    200.4 kB
  - scenario_33.xsd
    
    227.6 kB
  - scenario_34.xsd
    
    247.9 kB
  - scenario_4.xsd
    
    43.4 kB
  - scenario_5.xsd
    
    43.4 kB
  - scenario_6.xsd
    
    43.8 kB
  - scenario_7.xsd
    
    48.1 kB
  - scenario_8.xsd
    
    51.4 kB
  - scenario_9.xsd
    
    51.6 kB
  - util.xsd
    
    18.2 kB
- test
  - CMakeLists.txt
    
    1.7 kB
  - Scenarios.txt
    
    1.3 kB
  - autoRegressionParameters.csv
    
    20.2 kB
  - densities.csv
    
    38.1 kB
  - expected
    - ctsout1.txt
      
      1.9 kB
    - ctsout2ITNs.txt
      
      11.9 kB
    - ctsoutIPT.txt
      
      56.5 kB
    - ctsoutIRS30.txt
      
      8.5 kB
    - ctsoutMSAT.txt
      
      20.3 kB
    - ctsoutMultiVecPopInterventions.txt
      
      207.4 kB
    - ctsoutNamawalaArabiensis.txt
      
      20.4 kB
    - ctsoutNoInterv.txt
      
      118.7 kB
    - ctsoutNoMPDLarviciding.txt
      
      206.9 kB
    - ctsoutR_0.txt
      
      7.5 kB
    - ctsoutRach5IC.txt
      
      8.5 kB
    - ctsoutSimpleMPDLarviciding.txt
      
      226.2 kB
    - ctsoutSimpleMPDTest.txt
      
      764.3 kB
    - ctsoutVecFullTest.txt
      
      169.1 kB
    - output1.txt
      
      8.8 kB
    - output10.txt
      
      136 Bytes
    - output11.txt
      
      185 Bytes
    - output12.txt
      
      4.9 kB
    - output2.txt
      
      1.9 kB
    - output2ITNs.txt
      
      15.0 kB
    - output3.txt
      
      279 Bytes
    - output4.txt
      
      19.9 kB
    - output5.txt
      
      489.7 kB
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    - Simulations Oct 2010
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        81.3 kB
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      73.8 kB
- unittest
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    3.7 kB
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    5.7 kB
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    11.0 kB
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    4.6 kB
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    10.2 kB
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    7.1 kB
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    5.5 kB
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    2.7 kB
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    8.2 kB
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    5.1 kB
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    10.0 kB
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    3.5 kB
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    16.0 kB
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    2.7 kB
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    3.3 kB
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    2.6 kB
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    14.7 kB
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    2.7 kB
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    389 Bytes
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    21.8 kB
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    3.3 kB
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    2.9 kB
  - densities.csv
    
    38.1 kB
  - scenario.xml
    
    25.6 kB
- util
  - SchemaTranslator
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      220 Bytes
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    - .project
      
      375 Bytes
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      2.4 kB
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        131 Bytes
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      1.9 kB
    - bin
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      - schema-translator.jar
        
        88.2 kB
    - manifest.mft
      
      66 Bytes
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      1.5 kB
    - src
      - SchemaTranslator
        
        SchemaTranslator.kt
        
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        TranslatorJava.java
        
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        TranslatorKotlin.kt
        
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  - WriteParamDocu.py
    
    5.2 kB
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    5.0 kB
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    2.9 kB
  - build-info.sh
    
    555 Bytes
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    4.5 kB
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    7.1 kB
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    808 Bytes
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    3.4 kB
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    93 Bytes
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- version.txt
  
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- zlib

openmalaria-schema-34.0.zip