integrator = md dt = 0.002 nsteps = 500000000 nstlog = 50000 nstxout = 0 nstvout = 0 nstfout = 0 nstxtcout = 50000 nstcalcenergy = 100 nstenergy = 5000 ; cutoff-scheme = Verlet nstlist = 20 rlist = 1.2 coulombtype = pme rcoulomb = 1.2 vdwtype = Cut-off vdw-modifier = Force-switch rvdw_switch = 1.0 rvdw = 1.2 ; tcoupl = Nose-Hoover tc_grps = MEMB SOL_ION tau_t = 1.0 1.0 ref_t = 310 310 ; Note that the temperature varies between simulations ; pcoupl = Parrinello-Rahman pcoupltype = semiisotropic tau_p = 5.0 compressibility = 4.5e-5 4.5e-5 ref_p = 1.0 1.0 ; constraints = h-bonds constraint_algorithm = LINCS continuation = yes ; nstcomm = 100 comm_mode = linear comm_grps = MEMB SOL_ION ; refcoord_scaling = com