Published April 29, 2019 | Version v1
Journal article Restricted

Rediscovery, taxonomic status, and phylogenetic relationships of two rare and endemic snakes (Serpentes: Psammophiinae) from the southwestern Angolan plateau

Description

Branch, William R., Baptista, Ninda, Keates, Chad, Edwards, Shelley (2019): Rediscovery, taxonomic status, and phylogenetic relationships of two rare and endemic snakes (Serpentes: Psammophiinae) from the southwestern Angolan plateau. Zootaxa 4590 (3): 342-366, DOI: 10.11646/zootaxa.4590.3.2

Files

Restricted

The record is publicly accessible, but files are restricted. <a href="https://zenodo.org/account/settings/login?next=https://zenodo.org/records/2653404">Log in</a> to check if you have access.

Linked records

Additional details

References

  • Akani, G.C., Barieenee, I.F., Capizzi, D. & Luiselli, L. (1999) Snake communities of moist rainforest and derived savanna sites of Nigeria: biodiversity patterns and conservation priorities. Biodiversity Conservation, 8, 629-642. https://doi.org/10.1023/A:1008849702810
  • Arevalo, E., Davis, S.K, & Sites, J.J.W. (1994) Mitochondrial DNA sequence divergence and phylogenetic relationships among eight chromosome races of the Sceloporus grammicus complex (Phrynosomatidae) in central Mexico. Systematic Biology, 43, 387-418. https://doi.org/10.1093/sysbio/43.3.387
  • Baptista, N., Antonio, T., Branch, W.R. (2018) Amphibians and reptiles of the Tundavala region of the Angolan Escarpment. Biodiversity & Ecology, 6, 397-403. https://doi.org/10.7809/b-e.00351
  • Barbosa, L.A.G. (1970) Carta fitogeografica de Angola. Instituto de Investigacao Cientifica de Angola, Luanda, 323 pp.
  • Bocage, J.V.B. (1873) Melanges erpetologiques. II. Sur quelques reptiles et batraciens nouveaux, rares ou peu connus d'Afrique occidentale. Jornal de Sciencias, Mathematicas, Physicas e Naturaes, Lisboa, 4, 209-227.
  • Bocage, J.V.B. (1895) Herpetologie d'Angola et du Congo. Imprimerie Nationale, Lisbonne, 203 pp., 20 pls.
  • Boettger, O. (1883) Liste von Reptilien von Smithfield, Transvaal. Bericht Offenbacher Fereins fur Naturkunde (Offen-bach am Main), 1883, 155-156.
  • Bogert, C.M. (1940) Herpetological results of the Vernay-Angola Expedition, with notes on African reptiles in other collections. I. Snakes, including an arrangement of African Colubridae. Bulletin of the American Museum of Natural History, 77, 1-107.
  • Boulenger, G.A. (1887) A synopsis of the snakes of South Africa. Zoologist, Series 3, 11, 171-182.
  • Boulenger, G.A. (1905) A list of the batrachians and reptiles collected by Dr. W. J. Ansorge in Angola with descriptions of new species. Annals and Magazine of Natural History, Series 7, 16, 105-115. https://doi.org/10.1080/03745480509443656
  • Bourgeois, M. (1968) Contribution a la morphologie comparee du crane des Ophidiens de l'Afrique Centrale. Publications de l'Universite Officielle du Congo, 18, 1-293.
  • Branch, W.R. (2018) Snakes of Angola-an annotated checklist. Amphibian & Reptile Conservation, 12 (2), 41-82.
  • Broadley, D.G. (1966) A review of the African Stripebellied Sand snakes of the genus Psammophis. Arnoldia, Rhodesia, 2 (36), 1-9.
  • Broadley, D.G. (1977a) A review of the genus Psammophis in southern Africa (Serpentes: Colubridae). Arnoldia, Rhodesia, 8 (12), 1-29.
  • Broadley, D.G. (1977b) A revision of the African snakes of the genus Psammophylax Fitzinger (Colubridae). Occasional Papers of the National Museum of Rhodesia, Series B, 6 (1), 1-44.
  • Broadley, D.G. (1990) FitzSimons' Snakes of Southern Africa. Revised Edition): Jonathan Ball & Ad. DonkerPublishers, Parklands. 387pp.
  • Broadley, D.G. (1997) A review of Hemirhagerrhis viperina (Bocage) (Serpentes: Colubridae), a rupicolous Psammophine snake. Madoqua, 19 (2), 161-169.
  • Broadley, D.G. (2002) A review of the species of Psammophis Boie found south of Latitude 12° S (Serpentes: Psammophiinae). African Journal of Herpetology, 51 (2), 83-119. https://doi.org/10.1080/21564574.2002.9635466
  • Bruford, M.W., Hanotte, O., Brookfield, J.F.Y. & Burke, T. (1992) Singlelocus and multilocus DNA fingerprint. In: Rus Hoelzel, A. (Ed.), Molecular genetic analysis of populations: a practical approach. IRL Press, Oxford, pp. 225-269.
  • Cadle, J.E. (1994) The colubrid radiation in Africa (Serpentes: Colubridae): phylogenetic relationships and evolutionary patterns based on immunological data. Zoological Journal of the Linnaean Society, 110, 103-140. https://doi.org/10.1111/j.1096-3642.1994.tb01473.x
  • Chapin, J.P. (2018) Manuscript: Ansorge, William J., summary of itineraries in Angola, 1903-1910, American Geographical Society of New York Records, 1723-2010, bulk 1854-2000. [undated]
  • de Vienne, D.M., Giraud, T. & Martin, O.C. (2007) A Congruence Index for Testing Topological Similarity between Trees. Bioinformatics, 23 (23), 3119-3124. https://doi.org/10.1093/bioinformatics/btm500
  • Dowling, H.G. (1951) A proposed standard system for counting ventral scales in snakes. British Journal of Herpetology, 1 (5), 97-99.
  • Feio, M. (1981) O relevo do sudoeste de Angola, estudo de geomorfologia. Junta de Investigacoes Cientificas do Ultramar, Lisboa, 326 pp.
  • Figueroa, A., McKelvy, A.D., Grismer, L.L., Bell, C.D. & Lailvaux, S.P. (2016) A Species-Level Phylogeny of Extant Snakes with Description of a New Colubrid Subfamily and Genus. PLoS One, 11b (9), e0161070. https://doi.org/10.1371/journal.pone.0161070.
  • Fischer, J.G. (1881) Herpetologische Bemerkungen vorzugsweise uber Stucke des Naturhistorischen Museums in Bremen. Abhandlungen des Naturwissenschaftlichen Fereins in Bremen, 7, 225-238.
  • Forstner, M.R.J., Davis, S.K. & Arevalo, E. (1995) Support for the hypothesis of Anguimorph ancestry for the suborder Serpentes from phylogenetic analysis of mitochondrial DNA sequences. Molecular Phylogenetics and Evolution, 4, 93-102. https://doi.org/10.1006/mpev.1995.1010
  • Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41, 95-98.
  • Hellmich, W. (1957) Die Reptilienausbeute der Hamburgischen Angola-Expedition. Mitteilungen aus dem Hamburgischen Zoologischen Museum und Institut, 55, 39-80.
  • Hoffmann, L.A.C. (1989) An annotated list of amphibian and reptiIe observations from Etosha National Park. Madoqua, 16 (2), 87-92.
  • Hughes, B. (1999) Critical review of a revision of Psammophis (Linnaeus 1758) (Serpentes, Reptilia) by Frank Brandstatter. African Journal of Herpetology, 48, 63-70. https://doi.org/10.1080/21564574.1999.9651073
  • Hughes, B. (2004) Misidentification of Dromophis lineatus (Dumeril & Bibron, 1854) as Psammophis sibilans (Linne 1758) and the perpetuation of error. African Journal of Herpetology, 53, 63-76. https://doi.org/10.1080/21564574.2004.9635498
  • Hughes, B. & Wade, E.O.Z. (2002) On the African leopard whip snake Psammophis leopardinus Bocage 1887 (Serpentes: Colubridae), with the description of a new species from Zambia. Bulletin of the natural History Museum, London, Zoology, 68, 75-81.
  • Hughes, B. & Wade, E.O.Z. (2004) Is Psammophis sibilans occidentalis Werner, 1919 a junior synonym of P. phillipsi (Hallowell, 1844)? (Squamata: Serpentes: Colubridae). Herpetozoa, 16 (3/4), 127-132.
  • Huntley, B. (2009) SANBI/ISCED/UAN Angolan Biodiversity Assessment and Capacity Building Project, Report on Pilot Project. Unpublished Report, South African National Biodiversity Institute, Pretoria, 111 pp.
  • Huntley, B.J. & Matos, E.M. (1994) Botanical diversity and its conservation in Angola. Strelitzia, 1, 53-74.
  • Jurgens, N., Strohbach, B., Lages, F., Schmiedel, U., Finckh, M., Sichone, P., Hahn, L.-M., Zigelski, P. (2018) Biodiversity observation-an overview of the current state and first results of biodiversity monitoring studies. Biodiversity & Ecology, 6, 382-396. https://doi.org/10.7809/b-e.00350
  • Kelly, C.M.R., Barker, N.P., Villet, M.H., Broadley, D.G. & Branch, W.R. (2008) The snake family Psammophiidae (Reptilia: Serpentes): phylogenetics and species delimitation in the African Sand Snakes (Psammophis Boie, 1825) and allied genera. Molecular Phylogenetics and Evolution, 47, 1045-1060. https://doi.org/10.1016/j.ympev.2008.03.025
  • Kelly, C.M.R., Branch, W.R., Broadley, D.G., Barker, N.P. & Villet, M.H. (2011) Molecular systematics of the African snake family Lamprophiidae Fitzinger, 1843 (Serpentes: Elapoidea), with particular focus on the genera Lamprophis Fitzinger 1843 and Mehelya Csiki 1903. Molecular Phylogenetics and Evolution, 58 (2), 415-426. https://doi.org/10.1016/j.ympev.2010.11.010
  • Largan, M.J. & Rasmussen, J.B. (1993) Catalogue of the snakes of Ethiopia (Reptilia Serpentes), including identification keys. Tropical Zoology, 6, 313-434. https://doi.org/10.1080/03946975.1993.10539231
  • Laurent, R.F. (1964) Reptiles et Amphibiens de l'Angola (Troisieme contribution). Publicacoes culturais da Companhia de Diamantes de Angola, 67, 11-165.
  • Loveridge, A. (1940) Revision of the African snakes of the genera Dromophis and Psammophis. Bulletin of the Museum of comparative Zoology, 87 (1), 1-69.
  • Luiselli, L., Akani, G.C., Angelici, F.M., Eniang, E.A., Ude, L. & Politano, E. (2004) Local distribution, habitat use, and diet of two supposed 'species' of the Psammophis "phillipsi ' complex (Serpentes: Colubridae), sympatric in southern Nigeria. Amphibia-Reptilia, 25, 415-423. https://doi.org/10.1163/1568538042788915
  • Maddison, W.P. & Maddison, D.R. (2017) Mesquite: a modular system for evolutionary analysis. Version 3.3. Available from: http://mesquiteproject.org (accessed 27 November 2018)
  • Mendelsohn, J., Jarvis, A. & Robertson, J. (2013) A profile and atlas of the Cuvelai-Etosha Basin. Publ. Raison & Gondwana Collection, Windhoek, 170 pp.
  • Nagy, Z.T., Joger, U., Wink, M., Glaw, F. & Vences, M. (2003) Multiple colonization of Madagascar and Socotra by colubrid snakes: evidence from nuclear and mitochondrial gene phylogenies. Proceedings of the Royal Society of London, B, 270, 2613-2621. https://doi.org/10.1098/rspb.2003.2547
  • Posada, D. (2008) jModelTest: Phylogenetic Model Averaging. Molecular Biology and Evolution, 25, 1253-1256. https://doi.org/10.1093/molbev/msn083
  • Pyron, R.A., Burbrink, F.T. & Wiens, J.J. (2013) A phylogeny and revised classification of Squamata, including 4161 species of lizards and snakes. BMC Evolutionary Biology, 13, 93. https://doi.org/10.1186/1471-2148-13-93
  • Rambaut, A., Suchard, M.A., Xie, D. & Drummond, A.J. (2013) Tracer v1.5. University of Oxford, Rambaut Research Group. Available from: http://beast.bio.ed.ac.uk/Tracer (accessed 14 April 2018)
  • Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012) MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61 (3), 539-542. https://doi.org/10.1093/sysbio/sys029
  • Ruane, S., Myers, E.A., Lo, K., Yuen, S., Welt, R.S., Juman, M., Futterman, I., Nussbaum, R.A., Schneider, G., Burbrink, F.T. & Raxworthy, C.J. (2017) Unrecognized species diversity and new insights into colour pattern polymorphism within the widespread Malagasy snake Mimophis (Serpentes: Lamprophiidae), Systematics and Biodiversity, 16 (3), 229-244. https://doi.org/10.1080/14772000.2017.1375046
  • SASSCAL ObservationNet (2018) http://www.sasscalobservationnet.org/ (accessed 13 April 2018)
  • Shine, R. (1994) Sexual dimorphism in snakes revisited. Copeia, 1994 (2), 326-346. https://doi.org/10.2307/1446982
  • Slowinski, J.B. & Lawson, R. (2002) Snake phylogeny: evidence from nuclear and mitochondrial genes. Molecular Phylogenetics Evolution, 24, 194-202. https://doi.org/10.1016/S1055-7903(02)00239-7
  • Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. (2013) MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Molecular Biology and Evolution, 30, 2725-2729. https://doi.org/10.1093/molbev/mst197
  • Vaz Pinto, P., Verissimo, L. & Branch, W.R. (2018) Hiding in the bushes for 107 years: rediscovery of a lost Angolan gecko (Phyllodactylus ansorgii Boulenger, 1907, Sauria: Gekkonidae). [in preparation]
  • Vidal, N. & Hedges, S.B. (2002) Higher-level relationships of caenophidian snakes inferred from four nuclear and mitochondrial genes. Comptes Rendus de l'Academie des Sciences, 325, 987-995. https://doi.org/10.1016/S1631-0691(02)01509-3
  • Volynchik, S. (2012) Morphological variability in Fipera palaestinae along an environmental gradient. Asian Herpetological Research, 3 (3), 227-239. https://doi.org/10.3724/SP.J.1245.2012.00227
  • Wallach, V., Williams, K.L. & Boundy, J. (2014) Snakes of the World: A Catalogue of Living and Extinct Species. Taylor and Francis, CRC Press, Florida, 1237 pp. https://doi.org/10.1201/b16901
  • Whiting, A.S., Bauer, A.M. & Sites, J.W. (2003) Phylogenetic relationships and limb loss in sub-Saharan African scincine lizards (Squamata: Scincidae). Molecular Phylogenetics and Evolution, 29, 582-598. https://doi.org/10.1016/S1055-7903(03)00142-8
  • Xia, X. (2013) DAMBE5: a comprehensive software package for data analysis in molecular biology and evolution. Molecular Biology and Evolution, 30 (7), 1720-1728. https://doi.org/10.1093/molbev/mst064
  • Zaher, H. (1999) Hemipenial morphology of the South American xenodontine snakes, with a proposal for a monophyletic Xenodontinae and a reappraisal of colubroid hemipenes. Bulletin of the American Museum of Natural History, 240, 1-168. Zwickl, D.J. (2006) Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation, The University of Texas at Austin, Texas, 115 pp.