Published April 24, 2019 | Version 1
Dataset Open

102 hpf medaka embryos in 96 well plate (4 embryo/well) - brightfield - 2X magnification - ACQUIFER Imaging Machine

  • 1. COS Heidelberg, Germany
  • 2. ACQUIFER is a division of DITABIS AG, Pforzheim, Germany


Dataset originates from:

Gierten, J., Pylatiuk, C., Hammouda, O. T., Schock, C., Stegmaier, J., Wittbrodt, J., Gehrig, J. and Loosli, F. (2020).          Automated high-throughput heartbeat quantification in medaka and zebrafish embryos under physiological conditions.   Sci Rep 10, 2046, doi:10.1038/s41598-020-58563-w.

Used as benchmark dataset for Multi-Template-Matching by Thomas and Gehrig 

See implementation in Fiji

and in KNIME

Contacts: j.gehrig(at), l.thomas(at), jakob.gierten(at)



Additional details

Related works

Is supplement to
Journal article: 10.1186/s12859-020-3363-7 (DOI)
Journal article: 10.1038/s41598-020-58563-w (DOI)


ImageInLife – Training European Experts in Multilevel Bioimaging, Analysis and Modelling of Vertebrate Development and Disease 721537
European Commission