####  PROGRAM PARAMETERS  ####
backend = CPU
backend_precision = double
seed = 18112

####    SIM PARAMETERS    ####
sim_type = VMMC
ensemble = NVT
steps = 1e8

delta_translation = 0.11
delta_rotation = 0.22
T = 72C  
verlet_skin = 1.00 
umbrella_sampling = 0

### Seq. Dependence ##########
use_average_seq = 0
seq_dep_file =  /rds/general/user/ag4916/home/oxDNA_svn/oxDNA/oxDNA1_sequence_dependent_parameters.txt
small_system = 1 

####    INPUT / OUTPUT    ####
topology =/rds/general/user/ag4916/home/STRAND/STRAND_TRAP/generated.top
conf_file =/rds/general/user/ag4916/home/STRAND/STRAND_TRAP/generated.dat
trajectory_file = /rds/general/user/ag4916/home/STRAND/STRAND_TRAP/trajectory.dat
no_stdout_energy = 0 
restart_step_counter = 1
energy_file = energy.dat
print_conf_interval = 1e4
print_energy_every = 1e4 
time_scale = linear
external_forces = 1
external_forces_file = /rds/general/user/ag4916/home/STRAND/STRAND_TRAP/forces.dat