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Published March 9, 2019 | Version v0.3.1
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jmenglund/predsim: 0.3.1

  • 1. Swedish Museum of Natural History

Description

predsim is a simple command-line tool for simulating predictive datasets from MrBayes output files. Datasets can be simulated under the GTR+G+I substitution model or any nested variant available in MrBayes (JC69, HKY85 etc.). The code is contained within a single module that can also be imported using Python's import mechanism. It uses Seq-Gen for simulating the DNA-sequences and builds on the third-party library DendroPy.

The code has been tested with Python 2.7 and 3.6.

Source repository: https://github.com/jmenglund/predsim

This is a patch release with a minor refactoring of the function for reading the p-file.

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jmenglund/predsim-v0.3.1.zip

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