OniDaito/MRes-0.9.zip
OniDaito-MRes-bf9eed6
.gitignore
28 Bytes
README.markdown
6.0 kB
data
README.markdown
6.3 kB
extract.py
1.1 kB
loopdb_V1.3
src
Makefile
3.4 kB
bioplib
00README
420 Bytes
BuildConect.c
19.8 kB
COPYING.DOC
909 Bytes
FNam2PDB.c
7.2 kB
FindNextChainPDB.c
3.8 kB
FindNextResidue.c
3.8 kB
FindResidue.c
4.1 kB
FindResidueSpec.c
4.2 kB
FreeStringList.c
4.1 kB
GetPDBChainLabels.c
5.9 kB
GetWord.c
12.9 kB
IndexPDB.c
5.4 kB
MathType.h
2.2 kB
MathUtil.h
3.5 kB
OpenStdFiles.c
4.8 kB
PDBHeaderInfo.c
49.8 kB
ParseRes.c
12.4 kB
ReadPDB.c
155.1 kB
SelectCaPDB.c
4.4 kB
StoreString.c
6.1 kB
StructurePDB.c
8.9 kB
SysDefs.h
2.5 kB
WritePDB.c
74.3 kB
array.h
2.8 kB
array2.c
5.5 kB
chindex.c
4.4 kB
deprecated.h
29.9 kB
fsscanf.c
12.3 kB
fsscanf.h
1.9 kB
general.h
5.5 kB
hash.c
31.0 kB
hash.h
3.9 kB
macros.h
26.5 kB
padterm.c
4.0 kB
pdb.h
36.0 kB
port.h
3.4 kB
prime.c
5.4 kB
seq.h
6.7 kB
strcatalloc.c
3.7 kB
stringcat.c
3.1 kB
stringutil.c
5.9 kB
throne.c
7.7 kB
buildloopdb.c
27.7 kB
distances.h
390 Bytes
finddist.c
4.1 kB
makedistances.pl
3.3 kB
old
buildloopdb_ss_old.c
9.5 kB
scanloopdb.c
18.3 kB
test
pdb104l.ent
486 Bytes
test
1yqv_15.hits
24.3 kB
1yqv_20.hits
1.7 kB
doit.sh
179 Bytes
pdb1yqv.ent
431.2 kB
pdb1yqv.ent_3dwn
404.0 kB
pdb1yqv.ent_3dwn.num
403.9 kB
pdb_to_postgres.py
14.9 kB
redundancy.py
1.4 kB
schema.sql
4.3 kB
torsions.py
3.1 kB
early_networks
02
nn02.py
13.6 kB
06
nn06.py
16.4 kB
13
nn13.py
15.7 kB
23
nn23.py
15.5 kB
common
__init__.py
0 Bytes
acids.py
5.3 kB
batch_class.py
5.6 kB
batch_discrete.py
4.6 kB
batch_discrete_3d.py
6.4 kB
batch_endpoint.py
6.0 kB
batch_real.py
5.5 kB
batch_real_3d.py
6.6 kB
batch_real_blosum.py
6.6 kB
batch_real_omega.py
4.4 kB
batch_vector.py
5.3 kB
compare.py
1.7 kB
gen_data.py
4.7 kB
gen_data_end.py
5.0 kB
gen_data_mongo.py
4.0 kB
gen_data_omega.py
4.1 kB
gen_data_radians.py
4.2 kB
gen_data_refine.py
4.7 kB
gen_data_vec.py
3.7 kB
gen_torsions.py
2.8 kB
repping.py
2.6 kB
rmsds.csv
253.7 kB
stats.py
12.0 kB
torsion_to_coord.py
5.6 kB
util.py
2.4 kB
final_network
common
__init__.py
0 Bytes
acids.py
5.4 kB
aligner.py
1.0 kB
batcher.py
28.8 kB
endpoint.py
9.8 kB
gen_data.py
7.4 kB
geom.py
3.7 kB
kinematics.py
13.5 kB
nerf.py
5.4 kB
pdb.py
4.4 kB
repping.py
2.6 kB
scaffold.py
13.5 kB
settings.py
928 Bytes
util_neural.py
827 Bytes
label
generate.py
5.3 kB
graph.py
6.6 kB
train.py
9.2 kB
lstm
generate.py
5.2 kB
graph.py
5.5 kB
test.py
5.0 kB
train.py
8.3 kB
run
score.py
14.5 kB
session.py
6.5 kB
stats
db.py
4.9 kB
stats.py
12.4 kB
stats_con.py
1.2 kB
stats_diff.py
5.4 kB
stats_end.py
1.8 kB
stats_pos.py
1.5 kB
stats_rama.py
2.9 kB
stats_real.py
9.2 kB
stats_recon.py
6.0 kB
stats_residues.py
2.7 kB
stats_triple.py
3.3 kB
stats_viz.py
3.9 kB
stats_worst.py
1.8 kB
test
test_data.py
870 Bytes
test_split.py
868 Bytes
triple
graph.py
4.7 kB
notebooks
LSTM First Bash for Torsion Angles.ipynb
19.2 kB
TDNN Approximation for Backbone Torsion Angles.ipynb
21.6 kB
common
__init__.py
0 Bytes
gen_data.py
3.4 kB
util.py
6.0 kB
pdb_martin_02.pickle
3.3 MB
pdb_martin_03.pickle
3.3 MB