High-Throughput Toxicokinetics: Analtica Laser prototype


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Documentation for package ‘httkgui’ version 1.0

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add_chemtable Add a table of chemical information for use in making httk predictions.
calc_analytic_css Calculate the analytic steady state concentration.
calc_css Find the steady state concentration and the day it is reached.
calc_elimination_rate Calculate the elimination rate for a one compartment model.
calc_hepatic_clearance Calculate the hepatic clearance.
calc_ionization Calculate the ionization.
calc_mc_css Find the monte carlo steady state concentration.
calc_mc_oral_equiv Calculate Monte Carlo Oral Equivalent Dose
calc_rblood2plasma Calculate the constant ratio of the blood concentration to the plasma concentration.
calc_stats Calculate the statistics.
calc_total_clearance Calculate the total clearance.
calc_vdist Calculate the volume of distribution for a one compartment model.
chem.invivo.PK.data Published toxicokinetic time course measurements
chem.invivo.PK.summary.data Summary of published toxicokinetic time course experiments
chem.lists Chemical membership in different research projects
chem.physical_and_invitro.data Physico-chemical properties and in vitro measurements for toxicokinetics
export_pbtk_jarnac Export model to jarnac.
export_pbtk_sbml Export model to sbml.
get_cheminfo Retrieve chemical information from HTTK package
get_wetmore_cheminfo Get Wetmore Chemical Information.
get_wetmore_css Get Wetmore Css
get_wetmore_oral_equiv Get Wetmore Oral Equivalent Dose
in.list Convenience Boolean (yes/no) functions to idnetify chemical membership in several key lists.
introduce_variability Introduce variability in a data frame containing mean estimates.
is.expocast Convenience Boolean (yes/no) functions to idnetify chemical membership in several key lists.
is.httk Convenience Boolean (yes/no) functions to idnetify chemical membership in several key lists.
is.nhanes Convenience Boolean (yes/no) functions to idnetify chemical membership in several key lists.
is.nhanes.blood.analyte Convenience Boolean (yes/no) functions to idnetify chemical membership in several key lists.
is.nhanes.blood.parent Convenience Boolean (yes/no) functions to idnetify chemical membership in several key lists.
is.nhanes.serum.analyte Convenience Boolean (yes/no) functions to idnetify chemical membership in several key lists.
is.nhanes.serum.parent Convenience Boolean (yes/no) functions to idnetify chemical membership in several key lists.
is.nhanes.urine.analyte Convenience Boolean (yes/no) functions to idnetify chemical membership in several key lists.
is.nhanes.urine.parent Convenience Boolean (yes/no) functions to idnetify chemical membership in several key lists.
is.tox21 Convenience Boolean (yes/no) functions to idnetify chemical membership in several key lists.
is.toxcast Convenience Boolean (yes/no) functions to idnetify chemical membership in several key lists.
llTrapAUC Calculate AUC using trapezoid and logarithmic trapezoid methods.
lump_tissues Lump tissue parameters
monte_carlo Monte Carlo for pharmacokinetic models
parameterize_1comp Parameterize_1comp
parameterize_3comp Parameterize_3comp
parameterize_pbtk Parameterize_PBTK
parameterize_schmitt Parameterize Schmitt's method.
parameterize_steadystate Parameterize_SteadyState
physiology.data Species-specific physiology parameters
predict_partitioning_schmitt Predict partition coefficients using the method from Schmitt (2008).
solve_1comp Solve one compartment TK model
solve_3comp Solve_3comp
solve_pbtk Solve_PBTK
tissue.data Tissue composition and species-specific physiology parameters
Wetmore.data Published toxicokinetic predictions based on in vitro data