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v2.0.1 - [2026-06-16]

\n

Added

\n

Fixed

\n
- [#53](https://github.com/nf-core/phyloplace/pull/53) - Improve documentation of columns in input sheets [addresses #41](https://github.com/nf-core/phyloplace/issues/41) (by @erikrikarddaniel)\n- [#53](https://github.com/nf-core/phyloplace/pull/53) - Fix broken documentation links for parameters [addresses #49](https://github.com/nf-core/phyloplace/issues/49) (by @erikrikarddaniel)\n- [#53](https://github.com/nf-core/phyloplace/pull/53) - Improve adherence to Nextflow code standards [addresses #48](https://github.com/nf-core/phyloplace/issues/48) (by @erikrikarddaniel)\n- [#52](https://github.com/nf-core/phyloplace/pull/52) - Template update for nf-core/tools version 4.0.2 (by @erikrikarddaniel)
\n

Dependencies

\n
- [#52](https://github.com/nf-core/phyloplace/pull/52) - Update some software versions (by @erikrikarddaniel)
\n

| software | previously | now |\n| ----------- | ---------- | --------- |\n| nextflow | >=24.04.2 | >=25.10.4 |\n| hmmer/easel | 0.48 | 0.49 |\n| hmmer | 3.3.2 | 3.4 |\n| MultiQC | 1.27 | 1.35 |

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