{
  "access": {
    "embargo": {
      "active": false,
      "reason": null
    },
    "files": "public",
    "record": "public",
    "status": "open"
  },
  "created": "2026-06-10T10:01:22.106286+00:00",
  "custom_fields": {
    "code:codeRepository": "https://github.com/pathway-lod/map-to-rdf"
  },
  "deletion_status": {
    "is_deleted": false,
    "status": "P"
  },
  "files": {
    "count": 1,
    "enabled": true,
    "entries": {
      "pathway-lod/map-to-rdf-bgc-v1.1.zip": {
        "access": {
          "hidden": false
        },
        "checksum": "md5:d808b7026c4124b9a5ae325111455ccb",
        "ext": "zip",
        "id": "b3191ef3-1117-4779-a65b-ac8d3323e7cf",
        "key": "pathway-lod/map-to-rdf-bgc-v1.1.zip",
        "links": {
          "content": "https://zenodo.org/api/records/20625040/files/pathway-lod/map-to-rdf-bgc-v1.1.zip/content",
          "self": "https://zenodo.org/api/records/20625040/files/pathway-lod/map-to-rdf-bgc-v1.1.zip"
        },
        "metadata": null,
        "mimetype": "application/zip",
        "size": 2318904,
        "storage_class": "L"
      }
    },
    "order": [],
    "total_bytes": 2318904
  },
  "id": "20625040",
  "is_draft": false,
  "is_published": true,
  "links": {
    "access": "https://zenodo.org/api/records/20625040/access",
    "access_grants": "https://zenodo.org/api/records/20625040/access/grants",
    "access_links": "https://zenodo.org/api/records/20625040/access/links",
    "access_request": "https://zenodo.org/api/records/20625040/access/request",
    "access_users": "https://zenodo.org/api/records/20625040/access/users",
    "archive": "https://zenodo.org/api/records/20625040/files-archive",
    "archive_media": "https://zenodo.org/api/records/20625040/media-files-archive",
    "communities": "https://zenodo.org/api/records/20625040/communities",
    "communities-suggestions": "https://zenodo.org/api/records/20625040/communities-suggestions",
    "doi": "https://doi.org/10.5281/zenodo.20625040",
    "draft": "https://zenodo.org/api/records/20625040/draft",
    "file_modification": "https://zenodo.org/api/records/20625040/file-modification",
    "files": "https://zenodo.org/api/records/20625040/files",
    "latest": "https://zenodo.org/api/records/20625040/versions/latest",
    "latest_html": "https://zenodo.org/records/20625040/latest",
    "media_files": "https://zenodo.org/api/records/20625040/media-files",
    "parent": "https://zenodo.org/api/records/20345133",
    "parent_doi": "https://doi.org/10.5281/zenodo.20345133",
    "parent_doi_html": "https://zenodo.org/doi/10.5281/zenodo.20345133",
    "parent_html": "https://zenodo.org/records/20345133",
    "preview_html": "https://zenodo.org/records/20625040?preview=1",
    "quota_increase": "https://zenodo.org/api/records/20625040/quota-increase",
    "request_deletion": "https://zenodo.org/api/records/20625040/request-deletion",
    "requests": "https://zenodo.org/api/records/20625040/requests",
    "reserve_doi": "https://zenodo.org/api/records/20625040/draft/pids/doi",
    "self": "https://zenodo.org/api/records/20625040",
    "self_doi": "https://doi.org/10.5281/zenodo.20625040",
    "self_doi_html": "https://zenodo.org/doi/10.5281/zenodo.20625040",
    "self_html": "https://zenodo.org/records/20625040",
    "self_iiif_manifest": "https://zenodo.org/api/iiif/record:20625040/manifest",
    "self_iiif_sequence": "https://zenodo.org/api/iiif/record:20625040/sequence/default",
    "versions": "https://zenodo.org/api/records/20625040/versions"
  },
  "media_files": {
    "count": 0,
    "enabled": false,
    "entries": {},
    "order": [],
    "total_bytes": 0
  },
  "metadata": {
    "additional_descriptions": [
      {
        "description": "This dataset contains RDF representations of BGC data derived from three sources with different licenses:\n\n1. MIBiG (curated BGCs): Creative Commons Attribution 4.0 (CC BY 4.0). Cite: Terlouw et al. 2023, doi:10.1093/nar/gkac1049.\n\n2. plantiSMASH (predicted BGCs): Creative Commons Attribution 4.0 (CC BY 4.0). Cite: Kautsar et al. 2017, doi:10.1093/nar/gkx338.\n\n3. PlantCyc 17.0 (pathway gene annotations used for crosslinks): OPEN DATABASE LICENSE FOR THE PLANT METABOLIC NETWORK DATABASES (PMN). The databases may be used royalty-free worldwide and may be modified and redistributed, provided that derived copies clearly identify the source database(s), include applicable copyright notices and author lists, and identify or summarize modifications. See: https://plantcyc.org/?webform=license-agreement",
        "type": {
          "id": "notes",
          "title": {
            "de": "Anmerkungen",
            "en": "Notes"
          }
        }
      }
    ],
    "creators": [
      {
        "affiliations": [
          {
            "name": "Wageningen University & Research"
          }
        ],
        "person_or_org": {
          "family_name": "Del Pup",
          "given_name": "Elena",
          "identifiers": [
            {
              "identifier": "0000-0002-9472-918X",
              "scheme": "orcid"
            }
          ],
          "name": "Del Pup, Elena",
          "type": "personal"
        }
      },
      {
        "affiliations": [
          {
            "name": "Maastricht University"
          }
        ],
        "person_or_org": {
          "family_name": "Slenter",
          "given_name": "Denise",
          "identifiers": [
            {
              "identifier": "0000-0001-8449-1318",
              "scheme": "orcid"
            }
          ],
          "name": "Slenter, Denise",
          "type": "personal"
        }
      }
    ],
    "description": "RDF Turtle files linking biosynthetic gene cluster (BGC) data from MIBiG (curated) and plantiSMASH (predicted) to the PlantMetWiki / WikiPathways pathway knowledge graph, derived from PlantCyc 17.0. BGCs are typed as pmw:BiosyntheticGeneCluster and connected to pathway genes via RO:0000051 (has_part). For Arabidopsis thaliana, direct SPARQL joins are enabled through shared identifiers.org/tair.name/ IRIs. Includes VoID metadata, input gene-cluster membership JSON files, and a summary table of BGC\u2013pathway gene crosslinks (199 unique links across 38 BGCs, 50 genes, and 109 metabolic pathways for Arabidopsis thaliana).",
    "publication_date": "2026-06-10",
    "publisher": "Zenodo",
    "related_identifiers": [
      {
        "identifier": "https://github.com/pathway-lod/map-to-rdf",
        "relation_type": {
          "id": "issupplementto",
          "title": {
            "de": "Erg\u00e4nzt",
            "en": "Is supplement to"
          }
        },
        "scheme": "url"
      },
      {
        "identifier": "10.5281/zenodo.17967619",
        "relation_type": {
          "id": "ispartof",
          "title": {
            "de": "Ist Teil von",
            "en": "Is part of"
          }
        },
        "resource_type": {
          "id": "dataset",
          "title": {
            "de": "Datensatz",
            "en": "Dataset"
          }
        },
        "scheme": "doi"
      },
      {
        "identifier": "10.5281/zenodo.19928985",
        "relation_type": {
          "id": "isderivedfrom",
          "title": {
            "de": "Wird abgeleitet von",
            "en": "Is derived from"
          }
        },
        "resource_type": {
          "id": "dataset",
          "title": {
            "de": "Datensatz",
            "en": "Dataset"
          }
        },
        "scheme": "doi"
      },
      {
        "identifier": "10.1093/nar/gkac1049",
        "relation_type": {
          "id": "references",
          "title": {
            "de": "Referenziert",
            "en": "References"
          }
        },
        "resource_type": {
          "id": "publication-article",
          "title": {
            "de": "Zeitschriftenartikel",
            "en": "Journal article"
          }
        },
        "scheme": "doi"
      },
      {
        "identifier": "10.1093/nar/gkx338",
        "relation_type": {
          "id": "references",
          "title": {
            "de": "Referenziert",
            "en": "References"
          }
        },
        "resource_type": {
          "id": "publication-article",
          "title": {
            "de": "Zeitschriftenartikel",
            "en": "Journal article"
          }
        },
        "scheme": "doi"
      }
    ],
    "resource_type": {
      "id": "dataset",
      "title": {
        "de": "Datensatz",
        "en": "Dataset"
      }
    },
    "rights": [
      {
        "description": {
          "en": "The Creative Commons Attribution license allows re-distribution and re-use of a licensed work on the condition that the creator is appropriately credited."
        },
        "icon": "cc-by-icon",
        "id": "cc-by-4.0",
        "props": {
          "scheme": "spdx",
          "url": "https://creativecommons.org/licenses/by/4.0/legalcode"
        },
        "title": {
          "en": "Creative Commons Attribution 4.0 International"
        }
      }
    ],
    "subjects": [
      {
        "subject": "biosynthetic gene clusters"
      },
      {
        "subject": "plant metabolism"
      },
      {
        "subject": "RDF"
      },
      {
        "subject": "linked data"
      },
      {
        "subject": "MIBiG"
      },
      {
        "subject": "plantiSMASH"
      },
      {
        "subject": "WikiPathways"
      },
      {
        "subject": "PlantMetWiki"
      },
      {
        "subject": "PlantCyc"
      },
      {
        "subject": "Arabidopsis thaliana"
      },
      {
        "subject": "SPARQL"
      },
      {
        "subject": "VoID"
      }
    ],
    "title": "PlantMetWiki BGC crosslinks: MIBiG and plantiSMASH to RDF",
    "version": "bgc-v1.1"
  },
  "parent": {
    "access": {
      "owned_by": {
        "user": "1287056"
      },
      "settings": {
        "accept_conditions_text": null,
        "allow_guest_requests": false,
        "allow_user_requests": false,
        "secret_link_expiration": 0
      }
    },
    "communities": {
      "default": "342d6e48-254f-4752-a9fa-99275ddf4bec",
      "entries": [
        {
          "access": {
            "member_policy": "open",
            "members_visibility": "public",
            "record_submission_policy": "open",
            "review_policy": "closed",
            "visibility": "public"
          },
          "children": {
            "allow": false
          },
          "created": "2025-12-16T12:18:46.886577+00:00",
          "custom_fields": {
            "subjects": [
              {
                "id": "mesh:D053898"
              },
              {
                "id": "mesh:D008660"
              },
              {
                "id": "mesh:D045762Q000096"
              },
              {
                "id": "mesh:D045762Q000378"
              },
              {
                "id": "gemet:concept/5165"
              },
              {
                "id": "mesh:D023281"
              }
            ]
          },
          "deletion_status": {
            "is_deleted": false,
            "status": "P"
          },
          "id": "342d6e48-254f-4752-a9fa-99275ddf4bec",
          "links": {},
          "metadata": {
            "description": "Plant Metabolic Pathways Wiki (PlantMetWiki) is an open online portal for querying linked specialized plant pathway information.",
            "organizations": [
              {
                "id": "04qw24q55"
              },
              {
                "id": "02jz4aj89"
              }
            ],
            "title": "PlantMetWiki",
            "type": {
              "id": "organization"
            },
            "website": "https://plantmetwiki.bioinformatics.nl/"
          },
          "revision_id": 7,
          "slug": "plantmetwiki",
          "updated": "2025-12-16T12:46:12.815717+00:00"
        }
      ],
      "ids": [
        "342d6e48-254f-4752-a9fa-99275ddf4bec"
      ]
    },
    "id": "20345133",
    "pids": {
      "doi": {
        "client": "datacite",
        "identifier": "10.5281/zenodo.20345133",
        "provider": "datacite"
      }
    }
  },
  "pids": {
    "doi": {
      "client": "datacite",
      "identifier": "10.5281/zenodo.20625040",
      "provider": "datacite"
    },
    "oai": {
      "identifier": "oai:zenodo.org:20625040",
      "provider": "oai"
    }
  },
  "revision_id": 4,
  "stats": {
    "all_versions": {
      "data_volume": 16280637.0,
      "downloads": 7,
      "unique_downloads": 7,
      "unique_views": 372,
      "views": 376
    },
    "this_version": {
      "data_volume": 2318904.0,
      "downloads": 1,
      "unique_downloads": 1,
      "unique_views": 19,
      "views": 20
    }
  },
  "status": "published",
  "swh": {},
  "updated": "2026-06-10T10:01:22.301403+00:00",
  "versions": {
    "index": 5,
    "is_latest": false
  }
}