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    "description": "<p>ESPResSo (\"Extensible Simulation Package for Research on Soft Matter Systems\") is a highly versatile software package for performing and analyzing scientific Molecular Dynamics many-particle simulations of \"coarse-grained\" bead-spring models as they are used in soft-matter research in physics, chemistry and molecular biology. It can be used to simulate systems as for example polymers, liquid crystals, colloids, ferrofluids and biological systems such as DNA and lipid membranes.</p>\n<h2>5.0.1 release notes</h2>\n<h3>Bug fixes</h3>\n<ul>\n<li>The Lees-Edwards shear velocity is now properly handled in the simulation engine (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5282\">#5282</a>). A sign error was introduced in 5.0.0.</li>\n<li>Electrokinetics unit conversion was fixed (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5304\">#5304</a>). This required introducing a new parameter <code>tau</code> to <code>EKNone</code> and <code>EKFFT</code>. In previous ESPResSo releases, the <code>tau</code> parameter was factored into the <code>prefactor</code> argument.</li>\n<li>EK node and slice getters now return the imposed value for nodes with boundary conditions (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5327\">#5327</a>).</li>\n<li>EK GPU and EK CPU objects can no longer be mixed in the same EK container (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5327\">#5327</a>).</li>\n<li>Dihedral bonds checkpointing was fixed (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5279\">#5279</a>). A regression introduced in 5.0.0 prevented the checkpointing mechanism from reloading dihedral bonds.</li>\n<li>Interpolation-based constraints built from a grid now properly check the input grid is larger than the simulation box (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5324\">#5324</a>). This prevents segmentation faults when the input grid is too small.</li>\n<li>A few missing feature checks were added to particle property setters (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5326\">#5326</a>) and thermostat setters (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5320\">#5320</a>).</li>\n<li>Features in the <code>myconfig.hpp</code> file are now evaluated transitively (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5297\">#5297</a>). All ESPResSo versions since 4.0.0 would only activate implied features up to one degree of separation, leading to inconsistent feature activation. For example, if feature A is requested in <code>myconfig.hpp</code>, and A depends on B, and B depends on C, only A and B would be activated. This issue can be encountered when a small number of high-level features are enabled in <code>myconfig.hpp</code>, for example requesting magnetodynamics would activate dipoles but not rotation, preventing ESPResSo from being compiled. Starting with release 5.0.1, the entire dependency tree is evaluated.</li>\n<li>Missing feature guards in the short-range loop were added (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5274\">#5274</a>). Their absence prevented compiling ESPResSo in a build configured with <code>-D ESPRESSO_BUILD_WITH_SHARED_MEMORY_PARALLELISM=ON</code> and with a custom <code>myconfig.hpp</code> file containing a small number of features.</li>\n<li>Configuring ESPResSo with <code>-D ESPRESSO_BUILD_WITH_SHARED_MEMORY_PARALLELISM=ON</code> no longer enables hardware-specific optimizations as a side-effect (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5286\">#5286</a>).</li>\n<li>Floating-point exceptions (FPE) instrumentation is now temporarily disabled when calling third-party libraries known to raise FPE flags (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5286\">#5286</a>). In addition, user-requested hardware-specific optimization flags that introduce FPE as a side-effect of speculative execution are automatically disabled when FPE instrumentation is enabled.</li>\n<li>A source of undefined behavior that would cause a double free when ESPResSo was built with the nvc++ compiler version up to and including 26.3 was resolved (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5302\">#5302</a>).</li>\n<li>The VTK reader can now parse unstructured VTK files that contain boundaries (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5303\">#5303</a>).</li>\n</ul>\n<h3>Improved functionality</h3>\n<ul>\n<li>The Lees-Edwards boundary conditions restriction was lifted from the cluster analysis function (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/4965\">#4965</a>).</li>\n<li>The ELC error formula now follows the original paper and allows for ELC and ELCIC to tune to slightly larger summation limits (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5280\">#5280</a>).</li>\n<li>The Electrokinetics <code>EKNone</code> solver is now available on the GPU (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5304\">#5304</a>).</li>\n</ul>\n<h3>Improved performance</h3>\n<ul>\n<li>The electrokinetics CPU kernels now support OpenMP (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5287\">#5287</a>).</li>\n<li>The LB/EK GPU VTK writers now carry out a single CUDA memcopy per local domain (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5283\">#5283</a>). This removes a performance regression introduced in 5.0.0.</li>\n<li>The EK indexed reactions now support slice assignment (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5325\">#5325</a>). This reduces the overhead of setting up indexed reactions on a GPU lattice.</li>\n<li>The DPD pair force is now optimized for the standard ramps k=1 and k=2 (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5300\">#5300</a>).</li>\n</ul>\n<h3>Improved documentation</h3>\n<ul>\n<li>The user guide now better documents new features introduced in 5.0 (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5319\">#5319</a>, <a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5272\">#5272</a>).</li>\n<li>A finite-size effect was removed from the GCMC tutorial (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5288\">#5288</a>).</li>\n<li>The bibliography of the GCMC, Widom insertion, and TIP4P tutorials was improved (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5288\">#5288</a>).</li>\n</ul>\n<h3>Under the hood changes</h3>\n<ul>\n<li>A few harmless compiler diagnostics are now silenced (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5274\">#5274</a>, <a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5283\">#5283</a>, <a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5286\">#5286</a>).</li>\n<li>NVHPC compiler toolchain support was improved (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5302\">#5302</a>, <a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5320\">#5320</a>).</li>\n<li>The LB/EK GPU kernels are now compiled with OpenMP support (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5292\">#5292</a>).</li>\n<li>Library hdf5 version 2.0 is now fully supported (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5296\">#5296</a>).</li>\n<li>Library Kokkos is no longer built in-place with features deprecated in Kokkos version 4.0 (<a class=\"issue-link js-issue-link\" href=\"https://github.com/espressomd/espresso/pull/5313\">#5313</a>).</li>\n</ul>",
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