This dataset supports the Galaxy Training Network tutorial “Calculating CHEK2 variant effect scores from MAVE data with CountESS”.
\nIt contains input files for running a saved CountESS workflow in Galaxy to calculate RAD53 Complementation Scores (RCS) for coding SNVs in the human CHEK2 gene. The workflow uses variant frequency summaries derived from a multiplexed assay of variant effect (MAVE) study deposited in MaveDB as urn:mavedb:00001203-a-2.
\nFiles included:
\nThe calculated RCS values reproduce the RCS_this_SNV column from the corresponding MaveDB score set. These files are intended for training and demonstration of reproducible CountESS workflow execution in Galaxy.
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