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A. Nelson (Halymeniales, Rhodophyta) from the mesophotic zone of Hawai'i through taxogenomics, pp. 6 in Cryptogamie, Algologie 46 (1) on page 6, DOI: 10.5252/cryptogamie-algologie2025v46a1, http://zenodo.org/record/15496348", "type": { "id": "notes", "title": { "de": "Anmerkungen", "en": "Notes" } } } ], "creators": [ { "affiliations": [ { "name": "Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, 130 McAllister Way, Santa Cruz, California 95060 (United States) feresa @ hawaii. edu / feresa @ ucsc. edu (corresponding author)" } ], "person_or_org": { "family_name": "Cabrera", "given_name": "Feresa P.", "name": "Cabrera, Feresa P.", "type": "personal" } }, { "affiliations": [ { "name": "School of Life Sciences, University of Hawai'i, 3190 Maile Way, Honolulu, Hawai'i 96822 (United States) celia @ hawaii. edu" } ], "person_or_org": { "family_name": "Smith", "given_name": "Celia M.", "name": "Smith, Celia M.", "type": "personal" } }, { "affiliations": [ { "name": "Department of Biology, College of Charleston, 66 George Street, Charleston, South Carolina 29424 (United States) spaldinghl @ cofc. edu" } ], "person_or_org": { "family_name": "Spalding", "given_name": "Heather L.", "name": "Spalding, Heather L.", "type": "personal" } }, { "person_or_org": { "family_name": "Hauk", "given_name": "Brian B.", "name": "Hauk, Brian B.", "type": "personal" } }, { "affiliations": [ { "name": "Papah\u0101naumoku\u0101kea Marine National Monument, National Oceanic Atmospheric Administration, 1845 Wasp Boulevard, Building 176, Honolulu, Hawai'i 96818 (United States) brian. hauk @ noaa. gov randall. kosaki @ noaa. gov" } ], "person_or_org": { "family_name": "Kosaki", "given_name": "Randall K.", "name": "Kosaki, Randall K.", "type": "personal" } }, { "affiliations": [ { "name": "School of Life Sciences, University of Hawai'i, 3190 Maile Way, Honolulu, Hawai'i 96822, (United States) asherwoo @ hawaii. edu" } ], "person_or_org": { "family_name": "Sherwood", "given_name": "Alison R.", "name": "Sherwood, Alison R.", "type": "personal" } } ], "description": "

TABLE 1. — Functional classification of genes in the Amalthea mahilanii F.P.Cabrera & A.R.Sherwood, sp. nov. chloroplast genome. Categories for classification follow Ohta et al. (2003).

Genetic systemNumberGenes
Maintenance2dnaBrne
RNA Polymerase4rpoArpoBrpoC1rpoC2rpoZ
Transcription factors4ntcAompRrbcRycf29
Translation4infBinfCtsftufA
Ribosomal proteins
Large subunit28rpl1rpl2rpl3rpl4rpl5rpl6rpl9rpl11
rpl12rpl13rpl14rpl16rpl18rpl19rpl20rpl21
rpl22rpl23rpl24rpl27rpl28rpl29rpl311rpl32
rpl33rpl34rpl35rpl36
18rps1rps2rps3rps4rps5rps6rps7rps8
Small subunitrps9 rps18rps10 rps19rps11rps12rps13rps14rps16rps17
TRNA processing1tilS
Protein quality control4clpcdnakftsHgroEL
Photosystems
Phycobilisomes11apcA cpeAapcB cpeBapcD nblAapcEapcFcpcAcpcBcpcG
Photosystem I13psaApsaBpsaCpsaDpsaEpsaFpsaIpsaJ
psaKpsaLpsaMycf3ycf4
19psbApsbBpsbCpsbDpsbEpsbFpsbHpsbI
Photosystem IIpsbJ psbYpsbK psbZpsbL Psb30psbNpsbTpsbVpsbWpsbX
Cytochrome complex11ccs1 petLccsA petMpetA petNpetBpetDpetFpetGpetJ
Redox system7acsFbas1dsbDftrBgrxpbsAtrxA
ATP synthesis
ATP synthase9atpAatpBatpDatpEatpFatpGatpHatpl
clpCsufBsufC
Metabolism
Carbohydrates5odpAodpBpgmArbcLrbcScbbx
Lipids5accAaccBaccDacpPfabH
Nucleotides2carAupp
Amino acids8argBgltBilvBilvHsyfBsyhtrpAtrpG
Cofactors6chllmоеBpreAthiGthiSdfr
Transport
Transport7cemAsecAsecGsecYycf38ycf63tatC
Unknown
31ORF58ORF83ORF745ORF101ORF152ycf17ycf19ycf20
Conserved ORFsycf21ycf22ycf23ycf33ycf34ycf35ycf36ycf37
ycf39ycf41ycf45ycf46ycf52ycf53ycf54ycf55
ycf58ycf60ycf62ycf65ycf80ycf86ycf92
RNA genes
rRNAs3rrn5rrn23rrn16
29trnA-UGCtrnC-GCAtrnD-GUCtrnE-UUCtrnF-GAAtrnG-GCCtrnG-UCCtrnH-GUG
tRNAstrnI-GAUtrnK-UUUtrnL-CAAtrnL-UAAtrnL-UAGtrnM-CAUtrnM-CAUtrnM-CAU
trnN-GUUtrnP-UGGtrnQ-UUGtrnR-ACGtrnR-CCGtrnR-UCUtrnS-GCUtrnS-UGA
trnT-GGUtrnT-UGUtrnV-GACtrnW-CCAtrnY-GUA
Miscellaneous RNAs1rnpB
", "identifiers": [ { "identifier": "http://table.plazi.org/id/DF536606FFA6BB49FF5EFF2EFEB0CE02", "scheme": "url" } ], "publication_date": "2025-05-20", "publisher": "Zenodo", "references": [ { "reference": "OHTA N., MATSUZAKI M., MISUMI O., MIYAGISHIMA S. Y., NOZAKI H., TANAKA K., SHIN-I T., KOHARA Y. & KUROIWA T. 2003. - Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae. DNA research 10 (2): 67-77. https://doi.org/10.1093/dnares/10.2.67" } ], "related_identifiers": [ { "identifier": "10.5252/cryptogamie-algologie2025v46a1", "relation_type": { "id": "ispartof", "title": { "de": "Ist Teil von", "en": "Is part of" } }, "resource_type": { "id": "publication-article", "title": { "de": "Zeitschriftenartikel", "en": "Journal article" } }, "scheme": "doi" }, { "identifier": "urn:lsid:plazi.org:pub:FFBCFFE0FFA1BB4EFFD8FFF5FFFECF06", "relation_type": { "id": "ispartof", "title": { "de": "Ist Teil von", "en": "Is part of" } }, "resource_type": { "id": "publication-article", "title": { "de": "Zeitschriftenartikel", "en": "Journal article" } }, "scheme": "lsid" }, { "identifier": "http://publication.plazi.org/id/FFBCFFE0FFA1BB4EFFD8FFF5FFFECF06", "relation_type": { "id": "ispartof", "title": { "de": "Ist Teil von", "en": "Is part of" } }, "resource_type": { "id": "publication-article", "title": { "de": "Zeitschriftenartikel", "en": "Journal article" } }, "scheme": "url" }, { "identifier": "http://zenodo.org/record/15496348", "relation_type": { "id": "ispartof", "title": { "de": "Ist Teil von", "en": "Is part of" } }, "resource_type": { "id": "publication-article", "title": { "de": "Zeitschriftenartikel", "en": "Journal article" } }, "scheme": "url" } ], "resource_type": { "id": "dataset", "title": { "de": "Datensatz", "en": "Dataset" } }, "rights": [ { "description": { "en": "The Creative Commons Attribution license allows re-distribution and re-use of a licensed work on the condition that the creator is appropriately credited." }, "icon": "cc-by-icon", "id": "cc-by-4.0", "props": { "scheme": "spdx", "url": "https://creativecommons.org/licenses/by/4.0/legalcode" }, "title": { "en": "Creative Commons Attribution 4.0 International" } } ], "subjects": [ { "subject": "Biodiversity" }, { "subject": "Taxonomy" } ], "title": "TABLE 1 in Confirming a new species of Amalthea D'Archino & W. A. Nelson (Halymeniales, Rhodophyta) from the mesophotic zone of Hawai'i through taxogenomics" }, "parent": { "access": { "owned_by": { "user": "1161" }, "settings": { "accept_conditions_text": null, "allow_guest_requests": false, "allow_user_requests": false, "secret_link_expiration": 0 } }, "communities": { "default": "c529f97d-f8cb-4c13-a439-9e36891694c2", "entries": [ { "access": { "member_policy": "open", "members_visibility": "public", "record_submission_policy": "open", "review_policy": "open", "visibility": "public" }, "children": { "allow": true }, "created": "2013-11-11T14:14:18+00:00", "custom_fields": {}, "deletion_status": { "is_deleted": false, "status": "P" }, "id": "c529f97d-f8cb-4c13-a439-9e36891694c2", "links": {}, "metadata": { "curation_policy": "
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", "description": "A community to share publications related to bio-systematics.", "funding": [ { "funder": { "id": "051z6e826" } } ], "organizations": [ { "name": "Plazi" } ], "page": "

The Biodiversity Literature Repository (BLR) is to share publications related to bio-systematics. The goal is to provide

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