[ { "id": "mlp-histo-cells", "displayName": "MLP for cellular types classification in histological images", "files": [ { "sourceUrl": "https://zenodo.org/records/20138094/files/mlp-histo-cells-crc_model_mlp-torchscript.pt?download=1", "destinationPath": "mlp-histo-cells/crc_model_mlp-torchscript.pt", "sha256": "d25f6384f00fc889cac2c59d134299eb2cfee4605281f37cbd91a4feb9230d97" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/mlp-histo-cells-synset.txt?download=1", "destinationPath": "mlp-histo-cells/synset.txt", "sha256": "d1170c416670e74b03ffd5806e8d46d7f6fd5fd8b5385bd60be9fedf4c51c811" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/mlp-histo-cells-serving.properties?download=1", "destinationPath": "mlp-histo-cells/serving.properties", "sha256": "77a45187dba5c841947634bb3e0ef2e41c07e57349d82f8058159ba587fb0072" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/mlp-histo-cells-defaultServing.properties?download=1", "destinationPath": "mlp-histo-cells/defaultServing.properties", "sha256": "db9ca9da3fb452b367bb9df166f9bcd59499689df90d78addfa58e34c6b98eb9" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/mlp-histo-cells-usecase.properties?download=1", "destinationPath": "mlp-histo-cells/usecase.properties", "sha256": "70b0acf918746606c0ae8b334f40149318d691ebf5e86522d77b5dd9a815b03d" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/mlp-histo-cells-sample_input.tif?download=1", "destinationPath": "mlp-histo-cells/sample_input.tif", "sha256": "aade0dda14fd711653c6f7228df69daaeb6322a9e450600835692597e94d58ff" } ] }, { "id": "cnn-histo-cells", "displayName": "CNN for cellular types classification in histological images", "files": [ { "sourceUrl": "https://zenodo.org/records/20138094/files/cnn-histo-cells-crc_model_cnn-torchscript.pt?download=1", "destinationPath": "cnn-histo-cells/crc_model_cnn-torchscript.pt", "sha256": "58253f01deb0ad875f25e299c209eb29a0d86bcee9fd504c2069c7d9c23426be" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/cnn-histo-cells-synset.txt?download=1", "destinationPath": "cnn-histo-cells/synset.txt", "sha256": "d1170c416670e74b03ffd5806e8d46d7f6fd5fd8b5385bd60be9fedf4c51c811" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/cnn-histo-cells-serving.properties?download=1", "destinationPath": "cnn-histo-cells/serving.properties", "sha256": "dd9a3e44b595f31cbd4f13a210bc275b826fcf710c26124e6d96bca4b4cf2853" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/cnn-histo-cells-defaultServing.properties?download=1", "destinationPath": "cnn-histo-cells/defaultServing.properties", "sha256": "dd9a3e44b595f31cbd4f13a210bc275b826fcf710c26124e6d96bca4b4cf2853" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/cnn-histo-cells-usecase.properties?download=1", "destinationPath": "cnn-histo-cells/usecase.properties", "sha256": "70b0acf918746606c0ae8b334f40149318d691ebf5e86522d77b5dd9a815b03d" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/cnn-histo-cells-sample_input.tif?download=1", "destinationPath": "cnn-histo-cells/sample_input.tif", "sha256": "aade0dda14fd711653c6f7228df69daaeb6322a9e450600835692597e94d58ff" } ] }, { "id": "cnn-mnist", "displayName": "CNN for digits classification", "files": [ { "sourceUrl": "https://zenodo.org/records/20138094/files/cnn-mnist-cnn-mnist-0010.params?download=1", "destinationPath": "cnn-mnist/cnn-mnist-0010.params", "sha256": "b2f22cfa51c244852e54174c61d5df96619319497fb7a4db11a4bfc1559db10d" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/cnn-mnist-synset.txt?download=1", "destinationPath": "cnn-mnist/synset.txt", "sha256": "29dd21f55e4611d4c787c2148e39b4e341d4c10701dd03eed360aa55035bdb34" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/cnn-mnist-serving.properties?download=1", "destinationPath": "cnn-mnist/serving.properties", "sha256": "a683bd88b6c38b59fd39aac06dbf533312dacb490dca85b6670c39cf27676190" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/cnn-mnist-defaultServing.properties?download=1", "destinationPath": "cnn-mnist/defaultServing.properties", "sha256": "a3f56a2e199d3787c4815640091ae9d6210e8302ca49dc8dd909bf5952557bb2" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/cnn-mnist-usecase.properties?download=1", "destinationPath": "cnn-mnist/usecase.properties", "sha256": "70b0acf918746606c0ae8b334f40149318d691ebf5e86522d77b5dd9a815b03d" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/cnn-mnist-sample_input.tif?download=1", "destinationPath": "cnn-mnist/sample_input.tif", "sha256": "b4554736fdca10574b152252db03bac5ffe1c469068441e55ec3fcb45c28b3c0" } ] }, { "id": "rf-weka-renal", "displayName": "Random forest for renal tissue segmentation (model trained with WEKA)", "files": [ { "sourceUrl": "https://zenodo.org/records/20138094/files/rf-weka-renal-classifier.model?download=1", "destinationPath": "rf-weka-renal/classifier.model", "sha256": "71c82b0977ccf58b4534142114a51dba45510c1af8c70c6a0a9e3f2324a1f5f9" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/rf-weka-renal-usecase.properties?download=1", "destinationPath": "rf-weka-renal/usecase.properties", "sha256": "19136d47d177876a809ded65df9d88629fd94679d4fd0a4fbd4830b7aaa344fb" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/rf-weka-renal-sample_input.tiff?download=1", "destinationPath": "rf-weka-renal/sample_input.tiff", "sha256": "d313d2db0c08310f971673472719200af2e2d9a05e2416d4147f1c974ba547ad" } ] }, { "id": "unet-mito-seg", "displayName": "U-NET for mitochondria semantic segmentation (BioImageZoo model)", "files": [ { "sourceUrl": "https://zenodo.org/records/6406804/files/weights-torchscript.pt?download=1", "destinationPath": "unet-mito-seg/shivering-raccoon.pt", "sha256": "f743bb0e0f7d9bf05c4f72082024e30d71d4c2ef71bca4c8aa6ac43550515528" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/unet-mito-seg-serving.properties?download=1", "destinationPath": "unet-mito-seg/serving.properties", "sha256": "92ce308cee8522364f496710d7342812d056f6203d162c9b940457127cd20ff5" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/unet-mito-seg-defaultServing.properties?download=1", "destinationPath": "unet-mito-seg/defaultServing.properties", "sha256": "100a77d519b3ea713cb1e1999571168aee298728628b0a42b592330344299b85" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/unet-mito-seg-usecase.properties?download=1", "destinationPath": "unet-mito-seg/usecase.properties", "sha256": "d596df3a483b8c4d906622a6bc07bd1acf89b006f1e0e928e911aa9b60c7acbd" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/unet-mito-seg-sample_input.tif?download=1", "destinationPath": "unet-mito-seg/sample_input.tif", "sha256": "64eb594cd7ea20b89f20242c7061ff9f201240e12757882a589cbb74557e2252" }, { "sourceUrl": "https://zenodo.org/records/6406804/files/documentation.md?download=1", "destinationPath": "unet-mito-seg/documentation.md", "sha256": "094ad8f84cd1fa8d668a6c2a0e02f34947b4fc2baa00847a3d7c7f95039a8161" }, { "sourceUrl": "https://zenodo.org/records/6406804/files/rdf.yaml?download=1", "destinationPath": "unet-mito-seg/rdf.yaml", "sha256": "fb22c87f91ca86aa5955aa270da39f9a3277c769de1b438eda1c048e6cbd567b" }, { "sourceUrl": "https://zenodo.org/records/6406804/files/zero_mean_unit_variance.ijm?download=1", "destinationPath": "unet-mito-seg/zero_mean_unit_variance.ijm", "sha256": "767f2c3a50e36365c30b9e46e57fcf82e606d337e8a48d4a2440dc512813d186" } ] }, { "id": "yolo-cell-nuclei", "displayName": "YOLO for cells and nucleus detection and segmentation", "files": [ { "sourceUrl": "https://zenodo.org/records/20138094/files/yolo-cell-nuclei-best-torchscript.pt?download=1", "destinationPath": "yolo-cell-nuclei/best-torchscript.pt", "sha256": "07249bd7b7db10371c1751952c6ca23e544f2d6ca90498702f5de08795f718e4" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/yolo-cell-nuclei-synset.txt?download=1", "destinationPath": "yolo-cell-nuclei/synset.txt", "sha256": "d2e3472998540abe7421fcb21aa56e20563433c4b8ec73dd11822aeae3b02345" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/yolo-cell-nuclei-serving.properties?download=1", "destinationPath": "yolo-cell-nuclei/serving.properties", "sha256": "f0e52137596ee5e0ad6903ccd238328c93073c506538690f89751748b2729a8c" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/yolo-cell-nuclei-defaultServing.properties?download=1", "destinationPath": "yolo-cell-nuclei/defaultServing.properties", "sha256": "d5cbc73136ab4933dc1474548a64a596b22b4f8745866f79fef01d3c5ba0a248" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/yolo-cell-nuclei-sample_input.png?download=1", "destinationPath": "yolo-cell-nuclei/sample_input.png", "sha256": "92cb3c7cba4afc39312b256190a3296f5f1fa4b607b808c674453a9886251e11" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/yolo-cell-nuclei_detec-usecase.properties?download=1", "destinationPath": "yolo-cell-nuclei_detec/usecase.properties", "sha256": "65fc9ce2a3ed76650b3bc4954b6a51d418e89ed5f9c26922cca5927f1dfe5d24" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/yolo-cell-nuclei_instance-usecase.properties?download=1", "destinationPath": "yolo-cell-nuclei_instance/usecase.properties", "sha256": "22c4ef3af3145fcb679562b49824e453094931854af001746abf9e0f098fcc06" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/yolo-cell-nuclei_semantic-usecase.properties?download=1", "destinationPath": "yolo-cell-nuclei_semantic/usecase.properties", "sha256": "85af0e675397951e8289a7599453a4f78d7224e6d5ceb2783a4585ec9d33ffef" } ] }, { "id": "unet-nucleus-seg", "displayName": "U-NET for nucleus segmentation (BioImageZoo model)", "files": [ { "sourceUrl": "https://zenodo.org/records/6647674/files/weights-torchscript.pt?download=1", "destinationPath": "unet-nucleus-seg/weights-torchscript.pt", "sha256": "8410950508655a300793b389c815dc30b1334062fc1dadb1e15e55a93cbb99a0" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/unet-nucleus-seg-serving.properties?download=1", "destinationPath": "unet-nucleus-seg/serving.properties", "sha256": "ba7789ea2576408caee8a7690c4615417609c83ae30e6909189971f0b5baaab5" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/unet-nucleus-seg-defaultServing.properties?download=1", "destinationPath": "unet-nucleus-seg/defaultServing.properties", "sha256": "ba7789ea2576408caee8a7690c4615417609c83ae30e6909189971f0b5baaab5" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/unet-nucleus-seg-usecase.properties?download=1", "destinationPath": "unet-nucleus-seg/usecase.properties", "sha256": "d596df3a483b8c4d906622a6bc07bd1acf89b006f1e0e928e911aa9b60c7acbd" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/unet-nucleus-seg-sample_input.tif?download=1", "destinationPath": "unet-nucleus-seg/sample_input.tif", "sha256": "a24b3c708b6ca6825494eb7c5a4d221335fb3eef5eb9d03f4108907cdaad2bf9" }, { "sourceUrl": "https://zenodo.org/records/6647674/files/documentation.md?download=1", "destinationPath": "unet-nucleus-seg/documentation.md", "sha256": "9b8330e6fae8403efc7a44bb7365186c14fb6222b608791baab7a4e0352dbdcd" }, { "sourceUrl": "https://zenodo.org/records/6647674/files/rdf.yaml?download=1", "destinationPath": "unet-nucleus-seg/rdf.yaml", "sha256": "b4110beb99300b1718d4bc816756a488f38ba0b47bfc7f3531a3217a43279531" }, { "sourceUrl": "https://zenodo.org/records/6647674/files/zero_mean_unit_variance.ijm?download=1", "destinationPath": "unet-nucleus-seg/zero_mean_unit_variance.ijm", "sha256": "767f2c3a50e36365c30b9e46e57fcf82e606d337e8a48d4a2440dc512813d186" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/unet-nucleus-seg-Contours2instSegMask.ijm?download=1", "destinationPath": "unet-nucleus-seg/Contours2instSegMask.ijm", "sha256": "34c1d130daad084bcf643bb704812e4c4d7f16f569e16d663248eac86e20a8db" } ] }, { "id": "unet-subtilis-seg", "displayName": "U-NET for B. subtilis bacteria segmentation (BioImageZoo model)", "files": [ { "sourceUrl": "https://zenodo.org/records/7782776/files/tf_weights.zip?download=1", "action": "EXTRACT", "destinationPath": "unet-subtilis-seg/placid-llama", "extractMap": { "fingerprint.pb": "unet-subtilis-seg/placid-llama/fingerprint.pb", "keras_metadata.pb": "unet-subtilis-seg/placid-llama/keras_metadata.pb", "saved_model.pb": "unet-subtilis-seg/placid-llama/saved_model.pb", "saved_model.pb": "unet-subtilis-seg/placid-llama/saved_model.pb", "variables/variables.data-00000-of-00001": "unet-subtilis-seg/placid-llama/variables/variables.data-00000-of-00001", "variables/variables.index": "unet-subtilis-seg/placid-llama/variables/variables.index" } }, { "sourceUrl": "https://zenodo.org/records/20138094/files/unet-subtilis-seg-serving.properties?download=1", "destinationPath": "unet-subtilis-seg/serving.properties", "sha256": "8dbf342da1d1a7192a819988c1e4d5f5a37b5696fa08d655da25963cb113c8ee" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/unet-subtilis-seg-defaultServing.properties?download=1", "destinationPath": "unet-subtilis-seg/defaultServing.properties", "sha256": "75a7be3a88ad7ceed1906e1fe24b7412ac4c4c7ec0096c748f7294f225927746" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/unet-subtilis-seg-usecase.properties?download=1", "destinationPath": "unet-subtilis-seg/usecase.properties", "sha256": "d596df3a483b8c4d906622a6bc07bd1acf89b006f1e0e928e911aa9b60c7acbd" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/unet-subtilis-seg-sample_input.tif?download=1", "destinationPath": "unet-subtilis-seg/sample_input.tif", "sha256": "9f5881c1e26d249e20919ce6f69c086a8fb441424e7b08acb07f3357c3e2c8c4" }, { "sourceUrl": "https://zenodo.org/records/7782776/files/rdf.yaml?download=1", "destinationPath": "unet-subtilis-seg/rdf.yaml", "sha256": "04274b22e00f377257e85b07418a624401d622f7665e340382826052fed79a83" }, { "sourceUrl": "https://zenodo.org/records/7782776/files/per_sample_scale_range.ijm?download=1", "destinationPath": "unet-subtilis-seg/per_sample_scale_range.ijm", "sha256": "8845ba0b54554a7e48d2c8304b755011066541aac436e2140f447c7ea78a8595" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/unet-subtilis-seg-Contours2InstanceSegmentation.ijm?download=1", "destinationPath": "unet-subtilis-seg/Contours2InstanceSegmentation.ijm", "sha256": "a341599191f5ce570361af7bd8dbef850b37b88cefaab5930bf90220980cb620" } ] }, { "id": "unet-n2v-cells", "displayName": "U-NET for image denoising (Noise2Void model)", "files": [ { "sourceUrl": "https://zenodo.org/records/20138094/files/unet-n2v-cells-n2v-model.zip?download=1", "destinationPath": "unet-n2v-cells/n2v-model.zip", "sha256": "4939dae1476573e6ea1481d012b80d9151c1fa08d6abf6414fef18c4f80850b6" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/unet-n2v-cells-usecase.properties?download=1", "destinationPath": "unet-n2v-cells/usecase.properties", "sha256": "c776f3252a054d95eb2ffad8ffb6591542e22b23450c1a9400807949623e839e" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/unet-n2v-cells-sample_input_noised25.tif?download=1", "destinationPath": "unet-n2v-cells/sample_input_noised25.tif", "sha256": "cde54cfc88204f474939909f8539ed1f60196c505bfa0613b79b18e5ac21916a" } ] }, { "id": "sam2-hiera-tiny", "displayName": "SAM2 segmentation (model from DJL repo)", "files": [ { "sourceUrl": "https://mlrepo.djl.ai/model/cv/mask_generation/ai/djl/pytorch/sam2-hiera-tiny/0.0.1/sam2-hiera-tiny.zip", "action": "EXTRACT", "destinationPath": "sam2-hiera-tiny/sam2-hiera-tiny.pt", "extractMap": { "sam2-hiera-tiny.pt": "sam2-hiera-tiny/sam2-hiera-tiny.pt" } }, { "sourceUrl": "https://zenodo.org/records/20138094/files/sam2-hiera-tiny-serving.properties?download=1", "destinationPath": "sam2-hiera-tiny/serving.properties", "sha256": "bd9cf11c01f3a44f44b6fde19abffd2ef58319cb4bdde56c8755175a5e9af6bc" } ] }, { "id": "yolo11n-seg", "displayName": "YOLO detection and segmentation (model from DJL repo)", "files": [ { "sourceUrl": "https://mlrepo.djl.ai/model/cv/instance_segmentation/ai/djl/pytorch/yolo11n-seg/0.0.1/yolo11n-seg.zip", "destinationPath": "yolo11n-seg/yolo11n-seg.pt", "action": "EXTRACT", "extractMap": { "synset.txt": "yolo11n-seg/synset.txt", "yolo11n-seg.pt": "yolo11n-seg/yolo11n-seg.pt" } }, { "sourceUrl": "https://zenodo.org/records/20138094/files/yolo11n-seg-serving.properties?download=1", "destinationPath": "yolo11n-seg/serving.properties", "sha256": "b97278cce5dbec832205835e4801b28dcd80eaae10fee69c2bceba8adc51144b" }, { "sourceUrl": "https://zenodo.org/records/20138094/files/yolo11n-seg-sample_input.jpg?download=1", "destinationPath": "yolo11n-seg/sample_input.jpg", "sha256": "5a9522051c3cec2bbd2f6323fccba32e8fbf3ddcc2b3e2fd46b04c720bc6f866" } ] } ]