{
  "access": {
    "embargo": {
      "active": false,
      "reason": null
    },
    "files": "public",
    "record": "public",
    "status": "open"
  },
  "created": "2026-04-28T13:24:03.236981+00:00",
  "custom_fields": {
    "legacy:communities": [
      "f312c6b6-0dd6-4fb2-a224-7c4960394ac1",
      "dockstore",
      "f312c6b6-0dd6-4fb2-a224-7c4960394ac1"
    ]
  },
  "deletion_status": {
    "is_deleted": false,
    "status": "P"
  },
  "files": {
    "count": 1,
    "enabled": true,
    "entries": {
      "github.com-broadinstitute-palantir-workflows-BenchmarkSVs_v1.3.zip": {
        "access": {
          "hidden": false
        },
        "checksum": "md5:255ceb58c2c29ae4bf950fe122a4d6b7",
        "ext": "zip",
        "id": "e1b68cda-d00f-43c1-9209-c75aa0faf4b6",
        "key": "github.com-broadinstitute-palantir-workflows-BenchmarkSVs_v1.3.zip",
        "links": {
          "content": "https://zenodo.org/api/records/19855739/files/github.com-broadinstitute-palantir-workflows-BenchmarkSVs_v1.3.zip/content",
          "self": "https://zenodo.org/api/records/19855739/files/github.com-broadinstitute-palantir-workflows-BenchmarkSVs_v1.3.zip"
        },
        "metadata": {},
        "mimetype": "application/zip",
        "size": 10473,
        "storage_class": "L"
      }
    },
    "order": [],
    "total_bytes": 10473
  },
  "id": "19855739",
  "is_draft": false,
  "is_published": true,
  "links": {
    "access": "https://zenodo.org/api/records/19855739/access",
    "access_grants": "https://zenodo.org/api/records/19855739/access/grants",
    "access_links": "https://zenodo.org/api/records/19855739/access/links",
    "access_request": "https://zenodo.org/api/records/19855739/access/request",
    "access_users": "https://zenodo.org/api/records/19855739/access/users",
    "archive": "https://zenodo.org/api/records/19855739/files-archive",
    "archive_media": "https://zenodo.org/api/records/19855739/media-files-archive",
    "communities": "https://zenodo.org/api/records/19855739/communities",
    "communities-suggestions": "https://zenodo.org/api/records/19855739/communities-suggestions",
    "doi": "https://doi.org/10.5281/zenodo.19855739",
    "draft": "https://zenodo.org/api/records/19855739/draft",
    "file_modification": "https://zenodo.org/api/records/19855739/file-modification",
    "files": "https://zenodo.org/api/records/19855739/files",
    "latest": "https://zenodo.org/api/records/19855739/versions/latest",
    "latest_html": "https://zenodo.org/records/19855739/latest",
    "media_files": "https://zenodo.org/api/records/19855739/media-files",
    "parent": "https://zenodo.org/api/records/15529387",
    "parent_doi": "https://doi.org/10.5281/zenodo.15529387",
    "parent_doi_html": "https://zenodo.org/doi/10.5281/zenodo.15529387",
    "parent_html": "https://zenodo.org/records/15529387",
    "preview_html": "https://zenodo.org/records/19855739?preview=1",
    "quota_increase": "https://zenodo.org/api/records/19855739/quota-increase",
    "request_deletion": "https://zenodo.org/api/records/19855739/request-deletion",
    "requests": "https://zenodo.org/api/records/19855739/requests",
    "reserve_doi": "https://zenodo.org/api/records/19855739/draft/pids/doi",
    "self": "https://zenodo.org/api/records/19855739",
    "self_doi": "https://doi.org/10.5281/zenodo.19855739",
    "self_doi_html": "https://zenodo.org/doi/10.5281/zenodo.19855739",
    "self_html": "https://zenodo.org/records/19855739",
    "self_iiif_manifest": "https://zenodo.org/api/iiif/record:19855739/manifest",
    "self_iiif_sequence": "https://zenodo.org/api/iiif/record:19855739/sequence/default",
    "versions": "https://zenodo.org/api/records/19855739/versions"
  },
  "media_files": {
    "count": 0,
    "enabled": false,
    "entries": {},
    "order": [],
    "total_bytes": 0
  },
  "metadata": {
    "creators": [
      {
        "person_or_org": {
          "family_name": "broadinstitute",
          "name": "broadinstitute",
          "type": "personal"
        }
      }
    ],
    "description": "<h1>PALANTIR-WORKFLOWS</h1>\n<p><a href=\"https://github.com/broadinstitute/palantir-workflows/actions/workflows/run_tests.yaml/badge.svg?branch=main\"></a> <a href=\"https://github.com/broadinstitute/palantir-workflows/actions/workflows/test_dockerfiles.yaml/badge.svg?branch=main\"></a></p>\n<p>Utility workflows used by the DSP's Palantir team.  This repository should be used to manage frequently used utility workflows for the team, and facilitate their use on <a href=\"https://app.terra.bio/\">Terra</a> through <a href=\"https://dockstore.org/\">Dockstore</a>.</p>\n<p><strong>Remember, this is a public repository, so anything you put in this repo is publicly viewable.</strong></p>\n<h2>Testing Workflows</h2>\n<p>Automated WDL testing is implemented using <a href=\"https://github.com/rickymagner/watt\">watt</a>.\nTo add tests, update  <a href=\"test/watt_config.yml\">test/watt_config.yml</a>.\nSee the watt documentation for usage details.  Tests are run using github actions, controlled by <a href=\".github/workflows/run_tests.yaml\">.github/workflows/run_tests.yaml</a>.  Automated testing also validates all WDLs found in the repository, regardless of whether tests have been added for the particular WDL, using <code>womtool validate</code>.  Automated testing is performed on all PR's, as well as any pushes to the <code>main</code> branch.</p>\n<p>During testing, WDLs are run on GCP, with the execution bucket <code>gs://palantir-workflows-test-execution</code>.  Generally, input and expected output files are stored in <code>gs://palantir-workflows-test-data</code>.  The stdout from watt will be visible in the github actions UI, and cromwell log files can be found in a zipped artifact named <code>cromwell_logs</code>, also in the github actions UI.</p>\n<h2>Using the Dockstore Github App to Automatically Update Workflows in Dockstore/Terra</h2>\n<p>Workflows registered in Dockstore can be automatically synced when changes are pushed to this repo by adding their information to <code>.dockstore.yml</code>.\nIn this way, a change pushed to a branch in this repo can be automatically propagated into any Terra workspaces using the workflow.\nDetails can be found at Dockstore's Github App <a href=\"https://docs.dockstore.org/en/develop/getting-started/github-apps/github-apps.html\">documentation</a>.</p>",
    "publication_date": "2026-04-27",
    "publisher": "Zenodo",
    "related_identifiers": [
      {
        "identifier": "https://dockstore.org/aliases/workflow-versions/10.5281-zenodo.19855739",
        "relation_type": {
          "id": "isidenticalto",
          "title": {
            "de": "Ist identisch mit",
            "en": "Is identical to"
          }
        },
        "scheme": "url"
      },
      {
        "identifier": "https://dockstore.org/workflows/github.com/broadinstitute/palantir-workflows/BenchmarkSVs:v1.3",
        "relation_type": {
          "id": "isidenticalto",
          "title": {
            "de": "Ist identisch mit",
            "en": "Is identical to"
          }
        },
        "scheme": "url"
      },
      {
        "identifier": "https://dockstore.org/api/ga4gh/trs/v2/tools/%23workflow%2Fgithub.com%2Fbroadinstitute%2Fpalantir-workflows%2FBenchmarkSVs/versions/v1.3/PLAIN-WDL/descriptor/BenchmarkSVs.wdl",
        "relation_type": {
          "id": "isidenticalto",
          "title": {
            "de": "Ist identisch mit",
            "en": "Is identical to"
          }
        },
        "scheme": "url"
      }
    ],
    "resource_type": {
      "id": "software",
      "title": {
        "de": "Software",
        "en": "Software"
      }
    },
    "rights": [
      {
        "description": {
          "en": "The Creative Commons Attribution license allows re-distribution and re-use of a licensed work on the condition that the creator is appropriately credited."
        },
        "icon": "cc-by-icon",
        "id": "cc-by-4.0",
        "props": {
          "scheme": "spdx",
          "url": "https://creativecommons.org/licenses/by/4.0/legalcode"
        },
        "title": {
          "en": "Creative Commons Attribution 4.0 International"
        }
      }
    ],
    "title": "github.com/broadinstitute/palantir-workflows/BenchmarkSVs",
    "version": "v1.3"
  },
  "parent": {
    "access": {
      "owned_by": {
        "user": "76183"
      },
      "settings": {
        "accept_conditions_text": null,
        "allow_guest_requests": false,
        "allow_user_requests": false,
        "secret_link_expiration": 0
      }
    },
    "communities": {
      "default": "f312c6b6-0dd6-4fb2-a224-7c4960394ac1",
      "entries": [
        {
          "access": {
            "member_policy": "open",
            "members_visibility": "public",
            "record_submission_policy": "open",
            "review_policy": "open",
            "visibility": "public"
          },
          "children": {
            "allow": false
          },
          "created": "2024-11-05T20:16:09.639062+00:00",
          "custom_fields": {},
          "deletion_status": {
            "is_deleted": false,
            "status": "P"
          },
          "id": "f312c6b6-0dd6-4fb2-a224-7c4960394ac1",
          "links": {},
          "metadata": {
            "description": "Dockstore is a free and open source platform for sharing reusable and scalable analytical tools and workflows.",
            "title": "Dockstore",
            "type": {
              "id": "project"
            },
            "website": "https://dockstore.org/"
          },
          "revision_id": 5,
          "slug": "dockstore",
          "updated": "2024-11-05T20:17:15.254457+00:00"
        }
      ],
      "ids": [
        "f312c6b6-0dd6-4fb2-a224-7c4960394ac1"
      ]
    },
    "id": "15529387",
    "pids": {
      "doi": {
        "client": "datacite",
        "identifier": "10.5281/zenodo.15529387",
        "provider": "datacite"
      }
    }
  },
  "pids": {
    "doi": {
      "client": "datacite",
      "identifier": "10.5281/zenodo.19855739",
      "provider": "datacite"
    },
    "oai": {
      "identifier": "oai:zenodo.org:19855739",
      "provider": "oai"
    }
  },
  "revision_id": 4,
  "stats": {
    "all_versions": {
      "data_volume": 265608.0,
      "downloads": 31,
      "unique_downloads": 29,
      "unique_views": 104,
      "views": 104
    },
    "this_version": {
      "data_volume": 62838.0,
      "downloads": 6,
      "unique_downloads": 6,
      "unique_views": 21,
      "views": 21
    }
  },
  "status": "published",
  "swh": {
    "swhid": "swh:1:dir:62a4ab2b3302e88c6df87970ac482160cb67b1e2;origin=https://doi.org/10.5281/zenodo.15529387;visit=swh:1:snp:257d1d839a9b8202d595a1362ea3eef8b80974a9;anchor=swh:1:rel:595cdedf0cdfe9d38225b2ffb2a9746fcebc2f51;path=/"
  },
  "updated": "2026-04-28T13:24:03.465279+00:00",
  "versions": {
    "index": 7,
    "is_latest": true
  }
}