{
  "bids_dir": "[[NIPOPPY_DPATH_BIDS]]",
  "output_dir": "[[NIPOPPY_DPATH_PIPELINE_OUTPUT]]",
  "participant_label": ["[[NIPOPPY_BIDS_PARTICIPANT_ID]]"],
  "session_label": ["[[NIPOPPY_BIDS_SESSION_ID]]"],

  "fs_license_file": "[[FREESURFER_LICENSE_FILE]]",
  "fs_subjects_dir": "[[NIPOPPY_DPATH_DERIVATIVES]]/freesurfer/7.4.1/output/[[NIPOPPY_BIDS_SESSION_ID]]"

  "work_dir": "[[NIPOPPY_DPATH_PIPELINE_WORK]]",
  "bids_database_dir": "[[NIPOPPY_DPATH_PIPELINE_BIDS_DB]]",

  "nprocs": 1,
  "omp_nthreads": 1,
  "mem": "4G",

  "output_spaces": ["MNI152NLin2009cAsym", "T1w"],
  "pet2anat_method": "auto",
  "pet2anat_dof": 6,
  "anatref": "auto",
  "petref": "auto",
  "seg": "gtm",

  "skip_bids_validation": true,
  "notrack": true
}