Published January 7, 2026 | Version 2.4.1
Software Open

nf-core/smrnaseq: v2.4.1 - 2026-01-07 - Navy Iron Boxer Patch

Authors/Creators

  • 1. Boehringer Ingelheim
  • 2. @seqeralabs
  • 3. National Genomics Infrastructure, Science for Life Laboratory
  • 4. CRG
  • 5. ZS Associates
  • 6. Robert Bosch GmbH
  • 7. Seqera
  • 8. Computomics GmbH
  • 9. @Flomics
  • 10. The Roslin Institute
  • 11. Seqera Labs
  • 12. Medical University of Lodz, Poland
  • 13. INSERM
  • 14. National University of Singapore
  • 15. Leibniz Insititute of Virology; Center for Structural Systems Biology
  • 16. @nanoporetech

Description

What's Changed

  • Fix igenomes_base in nextflow_schema by @nschcolnicov in https://github.com/nf-core/smrnaseq/pull/479
  • Issue 477 by @nschcolnicov in https://github.com/nf-core/smrnaseq/pull/481
  • Add docs mirtop by @atrigila in https://github.com/nf-core/smrnaseq/pull/482
  • Replace CSVTK_JOIN to improve processing in large amount of files by @atrigila in https://github.com/nf-core/smrnaseq/pull/486
  • bugfix/mirtrace-species-not-defined by @kopichris in https://github.com/nf-core/smrnaseq/pull/493
  • bugfix/update-fasta-help by @kopichris in https://github.com/nf-core/smrnaseq/pull/494
  • Converted ch_bowtie_index to value channel by @nschcolnicov in https://github.com/nf-core/smrnaseq/pull/498
  • Bump-blat by @apeltzer in https://github.com/nf-core/smrnaseq/pull/502
  • Fix mirgenedb mirtop by @lpantano in https://github.com/nf-core/smrnaseq/pull/507
  • add codeowners by @lpantano in https://github.com/nf-core/smrnaseq/pull/509
  • Update mirtop and snapshots by @andresferben in https://github.com/nf-core/smrnaseq/pull/513
  • Update nf-core template version 3.3.1 by @andresferben in https://github.com/nf-core/smrnaseq/pull/515
  • Important! Template update for nf-core/tools v3.3.1 by @nf-core-bot in https://github.com/nf-core/smrnaseq/pull/510
  • Template 3.5.1 Update by @andresferben in https://github.com/nf-core/smrnaseq/pull/518
  • Important! Template update for nf-core/tools v3.5.1 by @nf-core-bot in https://github.com/nf-core/smrnaseq/pull/516
  • JSON schema improvements by @andresferben in https://github.com/nf-core/smrnaseq/pull/520
  • Update nf-core modules and subworkflows by @andresferben in https://github.com/nf-core/smrnaseq/pull/521
  • Simplify tests by @andresferben in https://github.com/nf-core/smrnaseq/pull/522
  • Prepare for release 2.4.1 by @andresferben in https://github.com/nf-core/smrnaseq/pull/523
  • Update UMI trimming docs before release by @atrigila in https://github.com/nf-core/smrnaseq/pull/526
  • Version 25.04.2 fixes the conda --mkdir error by @andresferben in https://github.com/nf-core/smrnaseq/pull/525
  • Update release date by @andresferben in https://github.com/nf-core/smrnaseq/pull/527
  • Release 2.4.1 by @andresferben in https://github.com/nf-core/smrnaseq/pull/524

New Contributors

  • @kopichris made their first contribution in https://github.com/nf-core/smrnaseq/pull/493
  • @andresferben made their first contribution in https://github.com/nf-core/smrnaseq/pull/513

Full Changelog: https://github.com/nf-core/smrnaseq/compare/2.4.0...2.4.1

Files

nf-core/smrnaseq-2.4.1.zip

Files (2.6 MB)

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md5:daa7ef7cfad3eb13edcbab351e32e20b
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Additional details

Related works

Is supplement to
Software: https://github.com/nf-core/smrnaseq/tree/2.4.1 (URL)

Software

Repository URL
https://github.com/nf-core/smrnaseq